CmaCh17G006640 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G006640
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	SAUR-like auxin-responsive protein family
Location	Cma_Chr17 : 5566192 .. 5566566 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAAAGCTGGAGGAACTCTCACCAAGCTCAAGTCCGCCATTAAACGATGGCCCTCGATCTCCAAGCTCGGTCGGAGCTCTAGCTCGGTGTCGGTTGCTGCCGTGAGTGATGGTGCCAATATCGACGAGAACATCTCTAAGGAGCTTCACACGGTCTACGTCGGTAAGTCTCGACGTCCGTATTTTGTCAGCTTAGATGTCATAGCACACCCTCTATTTCAAGAGTTGGTTGATAAGTCATCGTCCGACAACGATAGTGCAGTGGTTGTCTCTTGTGAAGTGGTCATGTTCGAACATTTGTTGTGGATGTTGGAAAATGCCGCGACCCAATTGGGGTCAACTGAGGAACTCGTCGAGTTCTACACTTGTTGA

mRNA sequence

ATGGTCAAAGCTGGAGGAACTCTCACCAAGCTCAAGTCCGCCATTAAACGATGGCCCTCGATCTCCAAGCTCGGTCGGAGCTCTAGCTCGGTGTCGGTTGCTGCCGTGAGTGATGGTGCCAATATCGACGAGAACATCTCTAAGGAGCTTCACACGGTCTACGTCGGTAAGTCTCGACGTCCGTATTTTGTCAGCTTAGATGTCATAGCACACCCTCTATTTCAAGAGTTGGTTGATAAGTCATCGTCCGACAACGATAGTGCAGTGGTTGTCTCTTGTGAAGTGGTCATGTTCGAACATTTGTTGTGGATGTTGGAAAATGCCGCGACCCAATTGGGGTCAACTGAGGAACTCGTCGAGTTCTACACTTGTTGA

Coding sequence (CDS)

ATGGTCAAAGCTGGAGGAACTCTCACCAAGCTCAAGTCCGCCATTAAACGATGGCCCTCGATCTCCAAGCTCGGTCGGAGCTCTAGCTCGGTGTCGGTTGCTGCCGTGAGTGATGGTGCCAATATCGACGAGAACATCTCTAAGGAGCTTCACACGGTCTACGTCGGTAAGTCTCGACGTCCGTATTTTGTCAGCTTAGATGTCATAGCACACCCTCTATTTCAAGAGTTGGTTGATAAGTCATCGTCCGACAACGATAGTGCAGTGGTTGTCTCTTGTGAAGTGGTCATGTTCGAACATTTGTTGTGGATGTTGGAAAATGCCGCGACCCAATTGGGGTCAACTGAGGAACTCGTCGAGTTCTACACTTGTTGA

Protein sequence

MVKAGGTLTKLKSAIKRWPSISKLGRSSSSVSVAAVSDGANIDENISKELHTVYVGKSRRPYFVSLDVIAHPLFQELVDKSSSDNDSAVVVSCEVVMFEHLLWMLENAATQLGSTEELVEFYTC

Homology

[Close]

BLAST of CmaCh17G006640 vs. TrEMBL
Match: A0A0A0KAQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G448680 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.7e-51
Identity = 113/126 (89.68%), Postives = 117/126 (92.86%), Query Frame = 1


Query: 1   MVKAGGTLTKLKSAIKRWPSISKLGRSSSSVSVAAVSDGANIDENI-SKELHTVYVGKSR 60
           MVKAG TLTKLKSAIKRWPSI+KLGRSSSSVSVAAVSDGAN+ ENI SKEL TVYVGKSR
Sbjct: 1   MVKAG-TLTKLKSAIKRWPSITKLGRSSSSVSVAAVSDGANVGENINSKELRTVYVGKSR 60

Query: 61  RPYFVSLDVIAHPLFQELVDKSSS-DNDSAVVVSCEVVMFEHLLWMLENAATQLGSTEEL 120
           RPYFVSLDV+ HPLFQELVDKSSS D D  +VVSCEVVMFEHLLWMLENAATQLGSTEEL
Sbjct: 61  RPYFVSLDVVTHPLFQELVDKSSSFDEDGELVVSCEVVMFEHLLWMLENAATQLGSTEEL 120

Query: 121 VEFYTC 125
           VEFYTC
Sbjct: 121 VEFYTC 125

[Close]

BLAST of CmaCh17G006640 vs. TrEMBL
Match: V7AP83_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G125400g PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.7e-34
Identity = 79/122 (64.75%), Postives = 93/122 (76.23%), Query Frame = 1


Query: 6   GTLTKLKSAIKRWPSISKLGRSSSSVSVAAVSDGANIDENI---SKELHTVYVGKSRRPY 65
           G LTKLKSAIKRWPS++KL RS+SSVS      G +         +ELH VYVGKSRR Y
Sbjct: 5   GKLTKLKSAIKRWPSLTKLSRSNSSVSSNKGLTGTSSSSKEHAHEQELHAVYVGKSRRRY 64

Query: 66  FVSLDVIAHPLFQELVDKSSSDNDSAVVVSCEVVMFEHLLWMLENAATQLGSTEELVEFY 125
            V+ +VI HP+FQEL+D+SSS +D  VVVSCEVV+FEHLLWMLE+  TQLGS +ELVEFY
Sbjct: 65  LVNSEVIDHPVFQELLDRSSSSHDDGVVVSCEVVLFEHLLWMLESEETQLGSMDELVEFY 124

[Close]

BLAST of CmaCh17G006640 vs. TrEMBL
Match: A0A0A0LBZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G646510 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-33
Identity = 78/121 (64.46%), Postives = 97/121 (80.17%), Query Frame = 1


Query: 6   GTLTKLKSAIKRWPSISKLGRSSSSVSVAAVSDGA--NIDENISKELHTVYVGKSRRPYF 65
           G LTKLKSAIKRWPSISKL R+++  S +AVS+    N + N +  LH V+VG+SRR Y 
Sbjct: 5   GKLTKLKSAIKRWPSISKLSRATTPTSSSAVSNATLDNDNHNHNHHLHPVFVGRSRRRYL 64

Query: 66  VSLDVIAHPLFQELVDKSSSDNDS-AVVVSCEVVMFEHLLWMLENAATQLGSTEELVEFY 124
           +S DV+ HPLFQELVDKSS +++   +V+SCEVV+FEHLLWMLENAATQLGS +ELV+FY
Sbjct: 65  LSSDVVHHPLFQELVDKSSPNSEEQGLVISCEVVLFEHLLWMLENAATQLGSADELVQFY 124

[Close]

BLAST of CmaCh17G006640 vs. TrEMBL
Match: A0A0L9VQ64_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g005400 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.1e-33
Identity = 77/122 (63.11%), Postives = 94/122 (77.05%), Query Frame = 1


Query: 6   GTLTKLKSAIKRWPSISKLGRSSSSVSV---AAVSDGANIDENISKELHTVYVGKSRRPY 65
           G LTKLKSAIKRWPS++KL R +S VS    A  +  ++ +    +ELH VYVGKSRR Y
Sbjct: 5   GKLTKLKSAIKRWPSLTKLSRGNSCVSSHKEATRTSSSSKEHAHEQELHAVYVGKSRRRY 64

Query: 66  FVSLDVIAHPLFQELVDKSSSDNDSAVVVSCEVVMFEHLLWMLENAATQLGSTEELVEFY 125
            V+ +VI HP+FQELVD+SSS +D  VVVSCEVV+FEHLLWMLE+  TQLGS +ELVEFY
Sbjct: 65  LVNSEVIDHPVFQELVDRSSSSHDDGVVVSCEVVLFEHLLWMLESEETQLGSMDELVEFY 124

[Close]

BLAST of CmaCh17G006640 vs. TrEMBL
Match: A0A0S3SZX8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G189500 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.1e-33
Identity = 77/122 (63.11%), Postives = 94/122 (77.05%), Query Frame = 1


Query: 6   GTLTKLKSAIKRWPSISKLGRSSSSVSV---AAVSDGANIDENISKELHTVYVGKSRRPY 65
           G LTKLKSAIKRWPS++KL R +S VS    A  +  ++ +    +ELH VYVGKSRR Y
Sbjct: 5   GKLTKLKSAIKRWPSLTKLSRGNSCVSSHKEATRTSSSSKEHAHEQELHAVYVGKSRRRY 64

Query: 66  FVSLDVIAHPLFQELVDKSSSDNDSAVVVSCEVVMFEHLLWMLENAATQLGSTEELVEFY 125
            V+ +VI HP+FQELVD+SSS +D  VVVSCEVV+FEHLLWMLE+  TQLGS +ELVEFY
Sbjct: 65  LVNSEVIDHPVFQELVDRSSSSHDDGVVVSCEVVLFEHLLWMLESEETQLGSMDELVEFY 124

[Close]

BLAST of CmaCh17G006640 vs. TAIR10
Match: AT1G72430.1 (AT1G72430.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 125.2 bits (313), Expect = 2.9e-29
Identity = 70/121 (57.85%), Postives = 87/121 (71.90%), Query Frame = 1


Query: 6   GTLTKLKSAIKRWPSISKLGRSSSSVSVAAVSDGANIDENISKELHTVYVGKSRRPYFVS 65
           G LTKLKSA+K+WPS +K      S S AAVSD  + D N    LH VYVG++RRPY + 
Sbjct: 5   GKLTKLKSAMKKWPSFAK--NHHHSTSSAAVSDELSEDNN----LHVVYVGQTRRPYMLR 64

Query: 66  LDVIAHPLFQELVDKSSS---DNDSAVVVSCEVVMFEHLLWMLENAATQLGSTEELVEFY 124
            D+I+HPLFQELVD+SSS   + D  +VV+CEVV+FEHLLWML+ +  + GS EEL EFY
Sbjct: 65  PDIISHPLFQELVDRSSSRSIEQDREIVVACEVVLFEHLLWMLK-SGQEGGSVEELAEFY 118

[Close]

BLAST of CmaCh17G006640 vs. TAIR10
Match: AT1G17345.1 (AT1G17345.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 122.9 bits (307), Expect = 1.4e-28
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 1


Query: 6   GTLTKLKSAIKRWPSISKLGRSSSSVSVAAVSDGANIDENISKELHTVYVGKSRRPYFVS 65
           G LTKLKSAIK+WPS++K   S+   +  AVS+ +  ++     LH VYVGKSRRPY +S
Sbjct: 5   GKLTKLKSAIKKWPSLTKNHHSTMCTASTAVSEVSKCED-----LHVVYVGKSRRPYMLS 64

Query: 66  LDVIAHPLFQELVDKSS-----SDNDSAVVVSCEVVMFEHLLWMLENAAT--------QL 124
             VIAHPLFQEL+D+SS       +   V+V+CEVV+FEHLLWML+N+++        + 
Sbjct: 65  SHVIAHPLFQELLDRSSRFIEERHDQETVLVACEVVLFEHLLWMLKNSSSDHGDEDDRER 124

[Close]

BLAST of CmaCh17G006640 vs. TAIR10
Match: AT5G20820.1 (AT5G20820.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 100.1 bits (248), Expect = 9.9e-22
Identity = 59/129 (45.74%), Postives = 79/129 (61.24%), Query Frame = 1


Query: 1   MVKAGGTLTKLKSAIKRWPSISKLGRSSSSVSVAAVSDGANIDENISKELHTVYVGKSRR 60
           M K G  L KLKS +K+  S +   + +   +    S  + +    S++L TVYVG++RR
Sbjct: 1   MAKGGNKLMKLKSVLKKLNSFNT--KPNQPPAQTNHSRSSAVSAFPSEDLQTVYVGRTRR 60

Query: 61  PYFVSLDVIAHPLFQEL--VDKSSSDNDSAVVVSCEVVMFEHLLWMLENA---ATQLGST 120
            Y VS DV++HPLFQ+L  VD      D ++ VSCEVV+FEHLLWMLENA    ++  S 
Sbjct: 61  TYHVSSDVVSHPLFQQLAAVDGGCGSEDGSISVSCEVVLFEHLLWMLENADADESRPESV 120

Query: 121 EELVEFYTC 125
            ELVEFY C
Sbjct: 121 YELVEFYAC 127

[Close]

BLAST of CmaCh17G006640 vs. TAIR10
Match: AT3G12955.1 (AT3G12955.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 62.0 bits (149), Expect = 3.0e-10
Identity = 39/113 (34.51%), Postives = 64/113 (56.64%), Query Frame = 1


Query: 10  KLKSAIKRWPSIS-KLGRSSSSVSVAAVSDGAN-------IDENISKELH-TVYVGKSRR 69
           +L   ++R  S+S +LGRS S  S+ + S   +       +D++ +  ++ TV VG++++
Sbjct: 6   RLMMMLRRCKSVSTQLGRSYSYTSLRSKSARRDPQDHLQDVDQSPTPSMYQTVLVGRTKK 65

Query: 70  PYFVSLDVIAHPLFQELVDKS-------SSDNDSAVVVSCEVVMFEHLLWMLE 107
           PY +S   + HPL   LV+K        + D    + V CEVV+F+HLLWMLE
Sbjct: 66  PYLISKKHLKHPLLNALVEKQQRYEEDDNEDGSCIITVKCEVVLFDHLLWMLE 118

[Close]

BLAST of CmaCh17G006640 vs. NCBI nr
Match: gi|449447940|ref|XP_004141724.1| (PREDICTED: uncharacterized protein LOC101209445 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 2.5e-51
Identity = 113/126 (89.68%), Postives = 117/126 (92.86%), Query Frame = 1


Query: 1   MVKAGGTLTKLKSAIKRWPSISKLGRSSSSVSVAAVSDGANIDENI-SKELHTVYVGKSR 60
           MVKAG TLTKLKSAIKRWPSI+KLGRSSSSVSVAAVSDGAN+ ENI SKEL TVYVGKSR
Sbjct: 1   MVKAG-TLTKLKSAIKRWPSITKLGRSSSSVSVAAVSDGANVGENINSKELRTVYVGKSR 60

Query: 61  RPYFVSLDVIAHPLFQELVDKSSS-DNDSAVVVSCEVVMFEHLLWMLENAATQLGSTEEL 120
           RPYFVSLDV+ HPLFQELVDKSSS D D  +VVSCEVVMFEHLLWMLENAATQLGSTEEL
Sbjct: 61  RPYFVSLDVVTHPLFQELVDKSSSFDEDGELVVSCEVVMFEHLLWMLENAATQLGSTEEL 120

Query: 121 VEFYTC 125
           VEFYTC
Sbjct: 121 VEFYTC 125

[Close]

BLAST of CmaCh17G006640 vs. NCBI nr
Match: gi|659124623|ref|XP_008462260.1| (PREDICTED: uncharacterized protein LOC103500661 [Cucumis melo])

HSP 1 Score: 205.3 bits (521), Expect = 6.2e-50
Identity = 110/126 (87.30%), Postives = 115/126 (91.27%), Query Frame = 1


Query: 1   MVKAGGTLTKLKSAIKRWPSISKLGRSSSSVSVAAVSDGANIDENI-SKELHTVYVGKSR 60
           MVKAG TLTKLKSAIKRWPSI+KLGRSSSSVSVAAVSDG N+ +N  SKEL TVYVGKSR
Sbjct: 1   MVKAG-TLTKLKSAIKRWPSITKLGRSSSSVSVAAVSDGGNVGDNTNSKELRTVYVGKSR 60

Query: 61  RPYFVSLDVIAHPLFQELVDKSSS-DNDSAVVVSCEVVMFEHLLWMLENAATQLGSTEEL 120
           RPYFVSLDV+ HPLFQELVDKSSS D D  +VVSCEVVMFEHLLWMLENAATQLGSTEEL
Sbjct: 61  RPYFVSLDVVTHPLFQELVDKSSSFDEDGELVVSCEVVMFEHLLWMLENAATQLGSTEEL 120

Query: 121 VEFYTC 125
           VEFYTC
Sbjct: 121 VEFYTC 125

[Close]

BLAST of CmaCh17G006640 vs. NCBI nr
Match: gi|470135872|ref|XP_004303730.1| (PREDICTED: uncharacterized protein LOC101311013 [Fragaria vesca subsp. vesca])

HSP 1 Score: 158.3 bits (399), Expect = 8.7e-36
Identity = 80/124 (64.52%), Postives = 95/124 (76.61%), Query Frame = 1


Query: 6   GTLTKLKSAIKRWPSISKLGRSSSSVSVAAVSDGANIDEN-----ISKELHTVYVGKSRR 65
           G LTKLKSAIKRWPS +KL R++SS++ A     ++  +N     ISK+LH VYVGKSRR
Sbjct: 5   GKLTKLKSAIKRWPSFTKLARTTSSIAAANEDSSSDQYDNDRAAVISKQLHAVYVGKSRR 64

Query: 66  PYFVSLDVIAHPLFQELVDKSSSDNDSAVVVSCEVVMFEHLLWMLENAATQLGSTEELVE 125
            Y VS DV+ HP+ QELVDKS  + +  VVVSCEVV+FEHLLWMLENA TQLGS +ELVE
Sbjct: 65  RYMVSSDVVEHPIIQELVDKSCEEEEGVVVVSCEVVLFEHLLWMLENAETQLGSMDELVE 124

[Close]

BLAST of CmaCh17G006640 vs. NCBI nr
Match: gi|694420916|ref|XP_009338336.1| (PREDICTED: uncharacterized protein LOC103930694 [Pyrus x bretschneideri])

HSP 1 Score: 153.7 bits (387), Expect = 2.1e-34
Identity = 83/124 (66.94%), Postives = 96/124 (77.42%), Query Frame = 1


Query: 1   MVKAGGTLTKLKSAIKRWPSISKLGRSSSSVSVAAVSDGANIDENISKELHTVYVGKSRR 60
           M KAG  LTKLKSAIKRWPS +KL R++SS++ AA  D ++     SKELH VYVGKSRR
Sbjct: 1   MAKAG-KLTKLKSAIKRWPSFTKLTRTTSSIAAAASDDQSDHVSKGSKELHAVYVGKSRR 60

Query: 61  PYFVSLDVIAHPLFQELVDKSSSDNDSAVVVSCEVVMFEHLLWMLENAATQLGSTEELVE 120
            Y VS DV+ HP+ QELVD SS +    VVV+CEVV+FEHLLWMLENA TQLGS +ELVE
Sbjct: 61  RYLVSSDVVDHPVIQELVDTSSGE----VVVACEVVLFEHLLWMLENAETQLGSMDELVE 119

Query: 121 FYTC 125
           FYTC
Sbjct: 121 FYTC 119

[Close]

BLAST of CmaCh17G006640 vs. NCBI nr
Match: gi|1009111703|ref|XP_015902240.1| (PREDICTED: auxin-induced protein 6B [Ziziphus jujuba])

HSP 1 Score: 152.1 bits (383), Expect = 6.2e-34
Identity = 80/119 (67.23%), Postives = 96/119 (80.67%), Query Frame = 1


Query: 6   GTLTKLKSAIKRWPSISKLGRSSSSVSVAAVSDGANIDENISKELHTVYVGKSRRPYFVS 65
           G LTKLKSAIKR PSI+KL R++SS S+AA +   N  + +SKELH VYVGKSRR Y V+
Sbjct: 5   GKLTKLKSAIKRLPSITKLSRTTSSSSIAATNYSTN--QLVSKELHAVYVGKSRRRYLVN 64

Query: 66  LDVIAHPLFQELVDKSSSDNDSAVVVSCEVVMFEHLLWMLENAATQLGSTEELVEFYTC 125
            ++I HPLFQELVD+S   ND  VVV+CEVV+FEHLLWMLENA +Q+GS +ELVEFYTC
Sbjct: 65  SEIIDHPLFQELVDRSCDCNDG-VVVTCEVVLFEHLLWMLENAESQMGSMDELVEFYTC 120

The following BLAST results are available for this feature:

BLAST of CmaCh17G006640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G006640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAQ4_CUCSA	1.7e-51	89.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G448680 PE=4 SV=1	[more]
V7AP83_PHAVU	5.7e-34	64.75	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G125400g PE=4 SV=1	[more]
A0A0A0LBZ7_CUCSA	1.3e-33	64.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G646510 PE=4 SV=1	[more]
A0A0L9VQ64_PHAAN	2.1e-33	63.11	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g005400 PE=4 SV=1	[more]
A0A0S3SZX8_PHAAN	2.1e-33	63.11	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G189500 PE=...	[more]

BLAST of CmaCh17G006640 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72430.1	2.9e-29	57.85	SAUR-like auxin-responsive protein family	[more]
AT1G17345.1	1.4e-28	51.91	SAUR-like auxin-responsive protein family	[more]
AT5G20820.1	9.9e-22	45.74	SAUR-like auxin-responsive protein family	[more]
AT3G12955.1	3.0e-10	34.51	SAUR-like auxin-responsive protein family	[more]

BLAST of CmaCh17G006640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447940\|ref\|XP_004141724.1\|	2.5e-51	89.68	PREDICTED: uncharacterized protein LOC101209445 [Cucumis sativus]	[more]
gi\|659124623\|ref\|XP_008462260.1\|	6.2e-50	87.30	PREDICTED: uncharacterized protein LOC103500661 [Cucumis melo]	[more]
gi\|470135872\|ref\|XP_004303730.1\|	8.7e-36	64.52	PREDICTED: uncharacterized protein LOC101311013 [Fragaria vesca subsp. vesca]	[more]
gi\|694420916\|ref\|XP_009338336.1\|	2.1e-34	66.94	PREDICTED: uncharacterized protein LOC103930694 [Pyrus x bretschneideri]	[more]
gi\|1009111703\|ref\|XP_015902240.1\|	6.2e-34	67.23	PREDICTED: auxin-induced protein 6B [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G006640.1	CmaCh17G006640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 12..105 score: 3.9
None	No IPR available	PANTHER	PTHR31374	FAMILY NOT NAMED	coord: 1..124 score: 5.1
None	No IPR available	PANTHER	PTHR31374:SF25	SUBFAMILY NOT NAMED	coord: 1..124 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G006640	Cucsa.359950	Cucumber (Gy14) v1	cgycmaB0983
CmaCh17G006640	Cucsa.149350	Cucumber (Gy14) v1	cgycmaB0411
CmaCh17G006640	Cla012544	Watermelon (97103) v1	cmawmB342
CmaCh17G006640	Cla015521	Watermelon (97103) v1	cmawmB330
CmaCh17G006640	Csa3G646510	Cucumber (Chinese Long) v2	cmacuB362
CmaCh17G006640	Csa7G448680	Cucumber (Chinese Long) v2	cmacuB383
CmaCh17G006640	MELO3C024323	Melon (DHL92) v3.5.1	cmameB319
CmaCh17G006640	MELO3C022688	Melon (DHL92) v3.5.1	cmameB334
CmaCh17G006640	ClCG09G001240	Watermelon (Charleston Gray)	cmawcgB308
CmaCh17G006640	ClCG07G014380	Watermelon (Charleston Gray)	cmawcgB332
CmaCh17G006640	CSPI03G28500	Wild cucumber (PI 183967)	cmacpiB366
CmaCh17G006640	CSPI07G22230	Wild cucumber (PI 183967)	cmacpiB387
CmaCh17G006640	CmoCh17G006430	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G006640	CmoCh14G012340	Cucurbita moschata (Rifu)	cmacmoB352
CmaCh17G006640	Lsi07G006530	Bottle gourd (USVL1VR-Ls)	cmalsiB360
CmaCh17G006640	Lsi02G028720	Bottle gourd (USVL1VR-Ls)	cmalsiB345
CmaCh17G006640	Cp4.1LG12g09450	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G006640	Cp4.1LG17g04190	Cucurbita pepo (Zucchini)	cmacpeB376
CmaCh17G006640	Cp4.1LG03g14860	Cucurbita pepo (Zucchini)	cmacpeB400
CmaCh17G006640	MELO3C024323.2	Melon (DHL92) v3.6.1	cmamedB372
CmaCh17G006640	MELO3C022688.2	Melon (DHL92) v3.6.1	cmamedB388
CmaCh17G006640	CsaV3_7G034130	Cucumber (Chinese Long) v3	cmacucB0456
CmaCh17G006640	CsaV3_3G030900	Cucumber (Chinese Long) v3	cmacucB0430
CmaCh17G006640	Cla97C09G163310	Watermelon (97103) v2	cmawmbB389
CmaCh17G006640	Cla97C07G141260	Watermelon (97103) v2	cmawmbB380
CmaCh17G006640	Bhi09G000220	Wax gourd	cmawgoB0488
CmaCh17G006640	Bhi01G002226	Wax gourd	cmawgoB0476
CmaCh17G006640	CsGy7G020540	Cucumber (Gy14) v2	cgybcmaB919
CmaCh17G006640	CsGy3G026480	Cucumber (Gy14) v2	cgybcmaB348
CmaCh17G006640	Carg18957	Silver-seed gourd	carcmaB1063
CmaCh17G006640	Carg13911	Silver-seed gourd	carcmaB0840
CmaCh17G006640	Carg06383	Silver-seed gourd	carcmaB0156

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh17G006640	CmaCh14G012050	Cucurbita maxima (Rimu)	cmacmaB251
CmaCh17G006640	CmaCh08G008200	Cucurbita maxima (Rimu)	cmacmaB383

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G006640	Wax gourd	cmawgoB0499
CmaCh17G006640	Cucurbita moschata (Rifu)	cmacmoB375
CmaCh17G006640	Watermelon (Charleston Gray)	cmawcgB330
CmaCh17G006640	Cucurbita pepo (Zucchini)	cmacpeB405
CmaCh17G006640	Melon (DHL92) v3.6.1	cmamedB383