ClCG09G001240 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG09G001240
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	SAUR-like auxin-responsive protein family LENGTH=119
Location	CG_Chr09 : 1159503 .. 1159874 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAAAGCCGGAACTCTCACCAAGCTCAAGTCAGCCATTAAAAGATGGCCCTCCATCACCAAGCTCGGTCGGAGCTCTAGCTCCATGTCGGTTGCCACCGTGAGCGATGGTACCAATATTGGCCAAAACAACTCCAAGGACCTTCGCACGGTCTATGTCGGTAAGTCCCGACGACTGTATTATGTCAGCTTAGATGTCGTAGCACACCCTCTATTTCAAGAGTTGGTGGATAAGTCATCGTTTGACGATGACGGTGTGCTGGTGGTTTCTTGTGAGGTTGTCATGTTTGAGCATTTATTATGGATGTTGGAGAATGCGGCGACGCAATTGGGGTCGACTGAGGAACTCGCCGAGTTCTACACTTGTTGA

mRNA sequence

ATGGTCAAAGCCGGAACTCTCACCAAGCTCAAGTCAGCCATTAAAAGATGGCCCTCCATCACCAAGCTCGGTCGGAGCTCTAGCTCCATGTCGGTTGCCACCGTGAGCGATGGTACCAATATTGGCCAAAACAACTCCAAGGACCTTCGCACGGTCTATGTCGGTAAGTCCCGACGACTGTATTATGTCAGCTTAGATGTCGTAGCACACCCTCTATTTCAAGAGTTGGTGGATAAGTCATCGTTTGACGATGACGGTGTGCTGGTGGTTTCTTGTGAGGTTGTCATGTTTGAGCATTTATTATGGATGTTGGAGAATGCGGCGACGCAATTGGGGTCGACTGAGGAACTCGCCGAGTTCTACACTTGTTGA

Coding sequence (CDS)

ATGGTCAAAGCCGGAACTCTCACCAAGCTCAAGTCAGCCATTAAAAGATGGCCCTCCATCACCAAGCTCGGTCGGAGCTCTAGCTCCATGTCGGTTGCCACCGTGAGCGATGGTACCAATATTGGCCAAAACAACTCCAAGGACCTTCGCACGGTCTATGTCGGTAAGTCCCGACGACTGTATTATGTCAGCTTAGATGTCGTAGCACACCCTCTATTTCAAGAGTTGGTGGATAAGTCATCGTTTGACGATGACGGTGTGCTGGTGGTTTCTTGTGAGGTTGTCATGTTTGAGCATTTATTATGGATGTTGGAGAATGCGGCGACGCAATTGGGGTCGACTGAGGAACTCGCCGAGTTCTACACTTGTTGA

Protein sequence

MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKDLRTVYVGKSRRLYYVSLDVVAHPLFQELVDKSSFDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTEELAEFYTC

Homology

[Close]

BLAST of ClCG09G001240 vs. TrEMBL
Match: A0A0A0KAQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G448680 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.1e-53
Identity = 111/125 (88.80%), Postives = 117/125 (93.60%), Query Frame = 1


Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQN-NSKDLRTVYVGKSRR 60
           MVKAGTLTKLKSAIKRWPSITKLGRSSSS+SVA VSDG N+G+N NSK+LRTVYVGKSRR
Sbjct: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSVSVAAVSDGANVGENINSKELRTVYVGKSRR 60

Query: 61  LYYVSLDVVAHPLFQELVDKSS-FDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTEELA 120
            Y+VSLDVV HPLFQELVDKSS FD+DG LVVSCEVVMFEHLLWMLENAATQLGSTEEL 
Sbjct: 61  PYFVSLDVVTHPLFQELVDKSSSFDEDGELVVSCEVVMFEHLLWMLENAATQLGSTEELV 120

Query: 121 EFYTC 124
           EFYTC
Sbjct: 121 EFYTC 125

[Close]

BLAST of ClCG09G001240 vs. TrEMBL
Match: A0A067L984_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24653 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.3e-34
Identity = 76/121 (62.81%), Postives = 94/121 (77.69%), Query Frame = 1


Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKDLRTVYVGKSRRL 60
           M K G LTKLKSAIKRWPS TKLGR++SS++ +T      I  N S++L+ VYVGKSRR 
Sbjct: 1   MAKIGKLTKLKSAIKRWPSFTKLGRTNSSIAAST----DVIEDNISRELQAVYVGKSRRR 60

Query: 61  YYVSLDVVAHPLFQELVDKSSFDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTEELAEF 120
           Y +S DV+ HPLFQEL+++S   DDG +V+SCEVV+FEHLLWMLE   +QLGS EELA+F
Sbjct: 61  YLLSSDVICHPLFQELIERSGGFDDGQVVISCEVVLFEHLLWMLEGGGSQLGSMEELADF 117

Query: 121 Y 122
           Y
Sbjct: 121 Y 117

[Close]

BLAST of ClCG09G001240 vs. TrEMBL
Match: A0A0B2P178_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009658 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.1e-33
Identity = 80/139 (57.55%), Postives = 97/139 (69.78%), Query Frame = 1


Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKD-------LRTVY 60
           M K G LTKLKSAIKRWPS+T+L R+SSS+S      G     N+SK+       LR VY
Sbjct: 1   MAKVGKLTKLKSAIKRWPSLTRLSRNSSSVSSNKGVSGKGTSLNSSKEHEHEQEQLRAVY 60

Query: 61  VGKSRRLYYVSLDVVAHPLFQELVDKSS---------FDDDGVLVVSCEVVMFEHLLWML 120
           VGKSRR Y V+ +V+ HP+FQELVD+S           DDDGV+VVSCEVV+FEHLLWML
Sbjct: 61  VGKSRRRYLVNSEVIDHPVFQELVDRSCSSNSSSSHHHDDDGVVVVSCEVVLFEHLLWML 120

Query: 121 ENAATQLGSTEELAEFYTC 124
           E+  T+LGS +EL EFY+C
Sbjct: 121 ESEETKLGSMDELVEFYSC 139

[Close]

BLAST of ClCG09G001240 vs. TrEMBL
Match: I1KHG8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G043500 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.1e-33
Identity = 80/139 (57.55%), Postives = 97/139 (69.78%), Query Frame = 1


Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKD-------LRTVY 60
           M K G LTKLKSAIKRWPS+T+L R+SSS+S      G     N+SK+       LR VY
Sbjct: 1   MAKVGKLTKLKSAIKRWPSLTRLSRNSSSVSSNKGVSGKGTSLNSSKEHEHEQEQLRAVY 60

Query: 61  VGKSRRLYYVSLDVVAHPLFQELVDKSS---------FDDDGVLVVSCEVVMFEHLLWML 120
           VGKSRR Y V+ +V+ HP+FQELVD+S           DDDGV+VVSCEVV+FEHLLWML
Sbjct: 61  VGKSRRRYLVNSEVIDHPVFQELVDRSCSSNSSSSHHHDDDGVVVVSCEVVLFEHLLWML 120

Query: 121 ENAATQLGSTEELAEFYTC 124
           E+  T+LGS +EL EFY+C
Sbjct: 121 ESEETKLGSMDELVEFYSC 139

[Close]

BLAST of ClCG09G001240 vs. TrEMBL
Match: A0A0A0LBZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G646510 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.6e-33
Identity = 79/125 (63.20%), Postives = 97/125 (77.60%), Query Frame = 1


Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGT--NIGQNNSKDLRTVYVGKSR 60
           M K G LTKLKSAIKRWPSI+KL R+++  S + VS+ T  N   N++  L  V+VG+SR
Sbjct: 1   MAKLGKLTKLKSAIKRWPSISKLSRATTPTSSSAVSNATLDNDNHNHNHHLHPVFVGRSR 60

Query: 61  RLYYVSLDVVAHPLFQELVDKSSFD-DDGVLVVSCEVVMFEHLLWMLENAATQLGSTEEL 120
           R Y +S DVV HPLFQELVDKSS + ++  LV+SCEVV+FEHLLWMLENAATQLGS +EL
Sbjct: 61  RRYLLSSDVVHHPLFQELVDKSSPNSEEQGLVISCEVVLFEHLLWMLENAATQLGSADEL 120

Query: 121 AEFYT 123
            +FYT
Sbjct: 121 VQFYT 125

[Close]

BLAST of ClCG09G001240 vs. TAIR10
Match: AT1G17345.1 (AT1G17345.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 118.6 bits (296), Expect = 2.7e-27
Identity = 67/131 (51.15%), Postives = 85/131 (64.89%), Query Frame = 1


Query: 5   GTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKDLRTVYVGKSRRLYYVS 64
           G LTKLKSAIK+WPS+TK   S+   +   VS+      +  +DL  VYVGKSRR Y +S
Sbjct: 5   GKLTKLKSAIKKWPSLTKNHHSTMCTASTAVSE-----VSKCEDLHVVYVGKSRRPYMLS 64

Query: 65  LDVVAHPLFQELVDKSS-----FDDDGVLVVSCEVVMFEHLLWMLENAAT--------QL 123
             V+AHPLFQEL+D+SS       D   ++V+CEVV+FEHLLWML+N+++        + 
Sbjct: 65  SHVIAHPLFQELLDRSSRFIEERHDQETVLVACEVVLFEHLLWMLKNSSSDHGDEDDRER 124

[Close]

BLAST of ClCG09G001240 vs. TAIR10
Match: AT1G72430.1 (AT1G72430.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 117.5 bits (293), Expect = 5.9e-27
Identity = 67/125 (53.60%), Postives = 86/125 (68.80%), Query Frame = 1


Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKDLRTVYVGKSRRL 60
           M K G LTKLKSA+K+WPS  K    S+S   A VSD   + ++N+  L  VYVG++RR 
Sbjct: 1   MAKVGKLTKLKSAMKKWPSFAKNHHHSTSS--AAVSD--ELSEDNN--LHVVYVGQTRRP 60

Query: 61  YYVSLDVVAHPLFQELVDKS---SFDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTEEL 120
           Y +  D+++HPLFQELVD+S   S + D  +VV+CEVV+FEHLLWML+ +  + GS EEL
Sbjct: 61  YMLRPDIISHPLFQELVDRSSSRSIEQDREIVVACEVVLFEHLLWMLK-SGQEGGSVEEL 118

Query: 121 AEFYT 123
           AEFYT
Sbjct: 121 AEFYT 118

[Close]

BLAST of ClCG09G001240 vs. TAIR10
Match: AT5G20820.1 (AT5G20820.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 100.9 bits (250), Expect = 5.7e-22
Identity = 61/129 (47.29%), Postives = 78/129 (60.47%), Query Frame = 1


Query: 1   MVKAGT-LTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKDLRTVYVGKSRR 60
           M K G  L KLKS +K+  S     + +   +    S  + +    S+DL+TVYVG++RR
Sbjct: 1   MAKGGNKLMKLKSVLKKLNSFNT--KPNQPPAQTNHSRSSAVSAFPSEDLQTVYVGRTRR 60

Query: 61  LYYVSLDVVAHPLFQEL--VDKSSFDDDGVLVVSCEVVMFEHLLWMLENA---ATQLGST 120
            Y+VS DVV+HPLFQ+L  VD     +DG + VSCEVV+FEHLLWMLENA    ++  S 
Sbjct: 61  TYHVSSDVVSHPLFQQLAAVDGGCGSEDGSISVSCEVVLFEHLLWMLENADADESRPESV 120

Query: 121 EELAEFYTC 124
            EL EFY C
Sbjct: 121 YELVEFYAC 127

[Close]

BLAST of ClCG09G001240 vs. TAIR10
Match: AT3G12955.1 (AT3G12955.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-09
Identity = 44/132 (33.33%), Postives = 71/132 (53.79%), Query Frame = 1


Query: 9   KLKSAIKRWPSI-TKLGRSSSSMSVATVSDGTNIGQNNSKDL---------RTVYVGKSR 68
           +L   ++R  S+ T+LGRS S  S+ + S   +  Q++ +D+         +TV VG+++
Sbjct: 6   RLMMMLRRCKSVSTQLGRSYSYTSLRSKSARRD-PQDHLQDVDQSPTPSMYQTVLVGRTK 65

Query: 69  RLYYVSLDVVAHPLFQELVDKSSF-----DDDG--VLVVSCEVVMFEHLLWMLE--NAAT 122
           + Y +S   + HPL   LV+K        ++DG  ++ V CEVV+F+HLLWMLE  +   
Sbjct: 66  KPYLISKKHLKHPLLNALVEKQQRYEEDDNEDGSCIITVKCEVVLFDHLLWMLEYGDEVH 125

[Close]

BLAST of ClCG09G001240 vs. NCBI nr
Match: gi|449447940|ref|XP_004141724.1| (PREDICTED: uncharacterized protein LOC101209445 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 5.9e-53
Identity = 111/125 (88.80%), Postives = 117/125 (93.60%), Query Frame = 1


Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQN-NSKDLRTVYVGKSRR 60
           MVKAGTLTKLKSAIKRWPSITKLGRSSSS+SVA VSDG N+G+N NSK+LRTVYVGKSRR
Sbjct: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSVSVAAVSDGANVGENINSKELRTVYVGKSRR 60

Query: 61  LYYVSLDVVAHPLFQELVDKSS-FDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTEELA 120
            Y+VSLDVV HPLFQELVDKSS FD+DG LVVSCEVVMFEHLLWMLENAATQLGSTEEL 
Sbjct: 61  PYFVSLDVVTHPLFQELVDKSSSFDEDGELVVSCEVVMFEHLLWMLENAATQLGSTEELV 120

Query: 121 EFYTC 124
           EFYTC
Sbjct: 121 EFYTC 125

[Close]

BLAST of ClCG09G001240 vs. NCBI nr
Match: gi|659124623|ref|XP_008462260.1| (PREDICTED: uncharacterized protein LOC103500661 [Cucumis melo])

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-52
Identity = 111/125 (88.80%), Postives = 116/125 (92.80%), Query Frame = 1


Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQN-NSKDLRTVYVGKSRR 60
           MVKAGTLTKLKSAIKRWPSITKLGRSSSS+SVA VSDG N+G N NSK+LRTVYVGKSRR
Sbjct: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSVSVAAVSDGGNVGDNTNSKELRTVYVGKSRR 60

Query: 61  LYYVSLDVVAHPLFQELVDKSS-FDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTEELA 120
            Y+VSLDVV HPLFQELVDKSS FD+DG LVVSCEVVMFEHLLWMLENAATQLGSTEEL 
Sbjct: 61  PYFVSLDVVTHPLFQELVDKSSSFDEDGELVVSCEVVMFEHLLWMLENAATQLGSTEELV 120

Query: 121 EFYTC 124
           EFYTC
Sbjct: 121 EFYTC 125

[Close]

BLAST of ClCG09G001240 vs. NCBI nr
Match: gi|470135872|ref|XP_004303730.1| (PREDICTED: uncharacterized protein LOC101311013 [Fragaria vesca subsp. vesca])

HSP 1 Score: 160.2 bits (404), Expect = 2.3e-36
Identity = 82/128 (64.06%), Postives = 96/128 (75.00%), Query Frame = 1


Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNN-----SKDLRTVYVG 60
           M K G LTKLKSAIKRWPS TKL R++SS++ A     ++   N+     SK L  VYVG
Sbjct: 1   MAKTGKLTKLKSAIKRWPSFTKLARTTSSIAAANEDSSSDQYDNDRAAVISKQLHAVYVG 60

Query: 61  KSRRLYYVSLDVVAHPLFQELVDKSSFDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTE 120
           KSRR Y VS DVV HP+ QELVDKS  +++GV+VVSCEVV+FEHLLWMLENA TQLGS +
Sbjct: 61  KSRRRYMVSSDVVEHPIIQELVDKSCEEEEGVVVVSCEVVLFEHLLWMLENAETQLGSMD 120

Query: 121 ELAEFYTC 124
           EL EFYTC
Sbjct: 121 ELVEFYTC 128

[Close]

BLAST of ClCG09G001240 vs. NCBI nr
Match: gi|657977676|ref|XP_008380756.1| (PREDICTED: uncharacterized protein LOC103443648 [Malus domestica])

HSP 1 Score: 156.0 bits (393), Expect = 4.3e-35
Identity = 81/123 (65.85%), Postives = 94/123 (76.42%), Query Frame = 1


Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKDLRTVYVGKSRRL 60
           M KAG LTKLKSAIKRWPS TKL R++SS++ AT  D ++     SK+L  VYVGKSRR 
Sbjct: 1   MAKAGKLTKLKSAIKRWPSFTKLTRTTSSIAAATSDDQSDHVSKGSKELHAVYVGKSRRR 60

Query: 61  YYVSLDVVAHPLFQELVDKSSFDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTEELAEF 120
           Y VS +VV HP+ QELVD SS    G +VV+CEVV+FEHLLWMLENA TQLGS +EL EF
Sbjct: 61  YLVSSEVVEHPVIQELVDTSS----GEVVVACEVVLFEHLLWMLENAETQLGSMDELVEF 119

Query: 121 YTC 124
           YTC
Sbjct: 121 YTC 119

[Close]

BLAST of ClCG09G001240 vs. NCBI nr
Match: gi|694420916|ref|XP_009338336.1| (PREDICTED: uncharacterized protein LOC103930694 [Pyrus x bretschneideri])

HSP 1 Score: 155.2 bits (391), Expect = 7.3e-35
Identity = 81/123 (65.85%), Postives = 93/123 (75.61%), Query Frame = 1


Query: 1   MVKAGTLTKLKSAIKRWPSITKLGRSSSSMSVATVSDGTNIGQNNSKDLRTVYVGKSRRL 60
           M KAG LTKLKSAIKRWPS TKL R++SS++ A   D ++     SK+L  VYVGKSRR 
Sbjct: 1   MAKAGKLTKLKSAIKRWPSFTKLTRTTSSIAAAASDDQSDHVSKGSKELHAVYVGKSRRR 60

Query: 61  YYVSLDVVAHPLFQELVDKSSFDDDGVLVVSCEVVMFEHLLWMLENAATQLGSTEELAEF 120
           Y VS DVV HP+ QELVD SS    G +VV+CEVV+FEHLLWMLENA TQLGS +EL EF
Sbjct: 61  YLVSSDVVDHPVIQELVDTSS----GEVVVACEVVLFEHLLWMLENAETQLGSMDELVEF 119

Query: 121 YTC 124
           YTC
Sbjct: 121 YTC 119

The following BLAST results are available for this feature:

BLAST of ClCG09G001240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAQ4_CUCSA	4.1e-53	88.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G448680 PE=4 SV=1	[more]
A0A067L984_JATCU	4.3e-34	62.81	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24653 PE=4 SV=1	[more]
A0A0B2P178_GLYSO	2.1e-33	57.55	Uncharacterized protein OS=Glycine soja GN=glysoja_009658 PE=4 SV=1	[more]
I1KHG8_SOYBN	2.1e-33	57.55	Uncharacterized protein OS=Glycine max GN=GLYMA_07G043500 PE=4 SV=1	[more]
A0A0A0LBZ7_CUCSA	3.6e-33	63.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G646510 PE=4 SV=1	[more]

BLAST of ClCG09G001240 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17345.1	2.7e-27	51.15	SAUR-like auxin-responsive protein family	[more]
AT1G72430.1	5.9e-27	53.60	SAUR-like auxin-responsive protein family	[more]
AT5G20820.1	5.7e-22	47.29	SAUR-like auxin-responsive protein family	[more]
AT3G12955.1	3.3e-09	33.33	SAUR-like auxin-responsive protein family	[more]

BLAST of ClCG09G001240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447940\|ref\|XP_004141724.1\|	5.9e-53	88.80	PREDICTED: uncharacterized protein LOC101209445 [Cucumis sativus]	[more]
gi\|659124623\|ref\|XP_008462260.1\|	1.7e-52	88.80	PREDICTED: uncharacterized protein LOC103500661 [Cucumis melo]	[more]
gi\|470135872\|ref\|XP_004303730.1\|	2.3e-36	64.06	PREDICTED: uncharacterized protein LOC101311013 [Fragaria vesca subsp. vesca]	[more]
gi\|657977676\|ref\|XP_008380756.1\|	4.3e-35	65.85	PREDICTED: uncharacterized protein LOC103443648 [Malus domestica]	[more]
gi\|694420916\|ref\|XP_009338336.1\|	7.3e-35	65.85	PREDICTED: uncharacterized protein LOC103930694 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG09G001240.1	ClCG09G001240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 11..104 score: 5.0
None	No IPR available	PANTHER	PTHR31374	FAMILY NOT NAMED	coord: 1..123 score: 1.9
None	No IPR available	PANTHER	PTHR31374:SF25	SUBFAMILY NOT NAMED	coord: 1..123 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG09G001240	Csa3G646510	Cucumber (Chinese Long) v2	cuwcgB179
ClCG09G001240	Csa7G448680	Cucumber (Chinese Long) v2	cuwcgB524
ClCG09G001240	MELO3C022688	Melon (DHL92) v3.5.1	mewcgB308
ClCG09G001240	MELO3C024323	Melon (DHL92) v3.5.1	mewcgB174
ClCG09G001240	Cla015521	Watermelon (97103) v1	wcgwmB007
ClCG09G001240	Cla012544	Watermelon (97103) v1	wcgwmB022
ClCG09G001240	Cla97C07G141260	Watermelon (97103) v2	wcgwmbB032
ClCG09G001240	Cla97C09G163310	Watermelon (97103) v2	wcgwmbB035
ClCG09G001240	Bhi01G002226	Wax gourd	wcgwgoB028
ClCG09G001240	Bhi09G000220	Wax gourd	wcgwgoB068
ClCG09G001240	CSPI07G22230	Wild cucumber (PI 183967)	cpiwcgB553
ClCG09G001240	CSPI03G28500	Wild cucumber (PI 183967)	cpiwcgB182
ClCG09G001240	Cucsa.149350	Cucumber (Gy14) v1	cgywcgB252
ClCG09G001240	Cucsa.359950	Cucumber (Gy14) v1	cgywcgB610
ClCG09G001240	CmaCh08G008200	Cucurbita maxima (Rimu)	cmawcgB778
ClCG09G001240	CmaCh14G012050	Cucurbita maxima (Rimu)	cmawcgB214
ClCG09G001240	CmaCh17G006640	Cucurbita maxima (Rimu)	cmawcgB308
ClCG09G001240	CmoCh17G006430	Cucurbita moschata (Rifu)	cmowcgB301
ClCG09G001240	CmoCh14G012340	Cucurbita moschata (Rifu)	cmowcgB202
ClCG09G001240	Lsi07G006530	Bottle gourd (USVL1VR-Ls)	lsiwcgB388
ClCG09G001240	Lsi02G028720	Bottle gourd (USVL1VR-Ls)	lsiwcgB160
ClCG09G001240	Cp4.1LG03g14860	Cucurbita pepo (Zucchini)	cpewcgB537
ClCG09G001240	Cp4.1LG12g09450	Cucurbita pepo (Zucchini)	cpewcgB128
ClCG09G001240	Cp4.1LG17g04190	Cucurbita pepo (Zucchini)	cpewcgB284
ClCG09G001240	CsGy3G026480	Cucumber (Gy14) v2	cgybwcgB165
ClCG09G001240	CsGy7G020540	Cucumber (Gy14) v2	cgybwcgB484
ClCG09G001240	MELO3C024323.2	Melon (DHL92) v3.6.1	medwcgB168
ClCG09G001240	MELO3C022688.2	Melon (DHL92) v3.6.1	medwcgB302
ClCG09G001240	Carg06383	Silver-seed gourd	carwcgB0118
ClCG09G001240	Carg13911	Silver-seed gourd	carwcgB0584
ClCG09G001240	Carg18957	Silver-seed gourd	carwcgB0741
ClCG09G001240	CsaV3_7G034130	Cucumber (Chinese Long) v3	cucwcgB546
ClCG09G001240	CsaV3_3G030900	Cucumber (Chinese Long) v3	cucwcgB185

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
ClCG09G001240	ClCG07G014380	Watermelon (Charleston Gray)	wcgwcgB035

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG09G001240	Silver-seed gourd	carwcgB0119
ClCG09G001240	Watermelon (Charleston Gray)	wcgwcgB032
ClCG09G001240	Cucurbita maxima (Rimu)	cmawcgB218
ClCG09G001240	Cucurbita moschata (Rifu)	cmowcgB779