ClCG05G006380 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGCTGCGACAACAGATGAATCAGCAATGAATGATGGAGCTGGAATTGCCAGCAGGGTCGAAATAGAGGGAAACATTTATAGGGAACCTTGCGTGGATTATTGGGGAGGAAGAGAGATTTGGAATATTTTACCAACTTTTAAATGAATTTTCAGCTTATTTTCCATGTAACTAAACAAAATTGATATGTCAGCCAATCAACGTCAACCAATAACAATTGGTCACCATCCCGTAAGGTTAAAGTTAAGATGGGGATTATTTGGAATATTTTGTAATCTTTAGTGATCAAACAGACATCAACCCTAGACTTCTGGGACCAAAAGTGTATTTTGTGGACGTTAAAGAGGTTATGTGGTATTTTTCCCTCTCTAAAACAACATTCATTGTGGTATTGTATCACAACAAATAGATATGAGGTTAACCCCATTGTCTTAGATATTAATGAGGGGTTTTTAATGACTAGGAACCTGCAGAAATGAAATCGCTAGCATCTCCTCTGTTCTCTTGGTTCCTCTATCGACAATAGTAGCAGAATCCATCCAAAGGGGTTTTACTTTTTCCTTTTTTGGTCTCATTACTTCTGTTAGGTACGGAAAGCCCAAATTCAGAAAAAGTTAGGTTCCTTTCATGGTTTGTTGCCCTTAGTAGGAATAATACCTTTGATATCAATTAGGAGTCCTTGGCTGTTGTGCTTCACTTGCAGCGGTGTGTTCTTTATAAGAATGGCGTGGGAAGATTTGGATCATTTATCATATAGGGCTGCTCCTTTTTATTAAGGCGTTCGATGTTGCAACACGATAGACCAAATTTCTCTATCCTCCTTTGGCAAGTGGTCTCTTTGCACTTTCGTGGAGTATTTGGTTGGAAAGAAACTAGAGGTCTTTTTCAGATGTTGAGGATTCTTCGCTTGGATTAATGACTCAAAGGGAGGAATATCATTCGACTCCAAGTAATGGGTTAGTGAGAAGTTCTACACTCCTTTTGAATGGAAATTTATTGGAGGCTACAGAAGATGGAGATTTACCAAATCTTATGCCTATTTATAGTGACACTAACTCTATATCTATTGCCACTTGGTCCATTGTTTTTGTTGTCGTCCCTAACTTTCAAGCCCCAGCTTGCAAATGA ATGGAGGCTGCGACAACAGATGAATCAGCAATGAATGATGGAGCTGGAATTGCCAGCAGGGTACGGAAAGCCCAAATTCAGAAAAAGTTAGGTTCCTTTCATGATGTTGAGGATTCTTCGCTTGGATTAATGACTCAAAGGGAGGAATATCATTCGACTCCAAGTAATGGGTTAGTGAGAAGTTCTACACTCCTTTTGAATGGAAATTTATTGGAGGCTACAGAAGATGGAGATTTACCAAATCTTATGCCTATTTATAGTGACACTAACTCTATATCTATTGCCACTTGGTCCATTGTTTTTGTTGTCGTCCCTAACTTTCAAGCCCCAGCTTGCAAATGA ATGGAGGCTGCGACAACAGATGAATCAGCAATGAATGATGGAGCTGGAATTGCCAGCAGGGTACGGAAAGCCCAAATTCAGAAAAAGTTAGGTTCCTTTCATGATGTTGAGGATTCTTCGCTTGGATTAATGACTCAAAGGGAGGAATATCATTCGACTCCAAGTAATGGGTTAGTGAGAAGTTCTACACTCCTTTTGAATGGAAATTTATTGGAGGCTACAGAAGATGGAGATTTACCAAATCTTATGCCTATTTATAGTGACACTAACTCTATATCTATTGCCACTTGGTCCATTGTTTTTGTTGTCGTCCCTAACTTTCAAGCCCCAGCTTGCAAATGA MEAATTDESAMNDGAGIASRVRKAQIQKKLGSFHDVEDSSLGLMTQREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTNSISIATWSIVFVVVPNFQAPACK
BLAST of ClCG05G006380 vs. Swiss-Prot
Match: HPSE1_ARATH (Heparanase-like protein 1 OS=Arabidopsis thaliana GN=At5g07830 PE=2 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 2.7e-12 Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 1
BLAST of ClCG05G006380 vs. Swiss-Prot
Match: HPSE3_ARATH (Heparanase-like protein 3 OS=Arabidopsis thaliana GN=At5g34940 PE=2 SV=2) HSP 1 Score: 67.4 bits (163), Expect = 1.1e-10 Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1
BLAST of ClCG05G006380 vs. Swiss-Prot
Match: HPSE2_ARATH (Heparanase-like protein 2 OS=Arabidopsis thaliana GN=At5g61250 PE=2 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 4.8e-09 Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 1
BLAST of ClCG05G006380 vs. TrEMBL
Match: A0A0A0L5V7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G165650 PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 4.5e-22 Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 1
BLAST of ClCG05G006380 vs. TrEMBL
Match: A0A0A0KUF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G043860 PE=4 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 7.5e-17 Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 1
BLAST of ClCG05G006380 vs. TrEMBL
Match: A0A0A0KTJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G390000 PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 9.8e-17 Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 1
BLAST of ClCG05G006380 vs. TrEMBL
Match: M1CAK7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402024654 PE=4 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 1.0e-13 Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 1
BLAST of ClCG05G006380 vs. TrEMBL
Match: M1CAK9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402024654 PE=4 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 1.0e-13 Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 1
BLAST of ClCG05G006380 vs. TAIR10
Match: AT5G07830.1 (AT5G07830.1 glucuronidase 2) HSP 1 Score: 72.8 bits (177), Expect = 1.5e-13 Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 1
BLAST of ClCG05G006380 vs. TAIR10
Match: AT5G34940.2 (AT5G34940.2 glucuronidase 3) HSP 1 Score: 67.4 bits (163), Expect = 6.5e-12 Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 1
BLAST of ClCG05G006380 vs. TAIR10
Match: AT5G61250.2 (AT5G61250.2 glucuronidase 1) HSP 1 Score: 62.0 bits (149), Expect = 2.7e-10 Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 1
BLAST of ClCG05G006380 vs. NCBI nr
Match: gi|659076900|ref|XP_008438923.1| (PREDICTED: heparanase-like protein 2 [Cucumis melo]) HSP 1 Score: 115.5 bits (288), Expect = 5.9e-23 Identity = 54/70 (77.14%), Postives = 65/70 (92.86%), Query Frame = 1
BLAST of ClCG05G006380 vs. NCBI nr
Match: gi|449433423|ref|XP_004134497.1| (PREDICTED: heparanase-like protein 2 isoform X2 [Cucumis sativus]) HSP 1 Score: 112.1 bits (279), Expect = 6.5e-22 Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 1
BLAST of ClCG05G006380 vs. NCBI nr
Match: gi|778679004|ref|XP_011651069.1| (PREDICTED: heparanase-like protein 2 isoform X1 [Cucumis sativus]) HSP 1 Score: 112.1 bits (279), Expect = 6.5e-22 Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 1
BLAST of ClCG05G006380 vs. NCBI nr
Match: gi|659107541|ref|XP_008453728.1| (PREDICTED: heparanase-like protein 1 [Cucumis melo]) HSP 1 Score: 95.1 bits (235), Expect = 8.2e-17 Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 1
BLAST of ClCG05G006380 vs. NCBI nr
Match: gi|700198112|gb|KGN53270.1| (hypothetical protein Csa_4G043860 [Cucumis sativus]) HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16 Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |