Cla97C05G087960 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G087960
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	heparanase-like protein 2
Location	Cla97Chr05 : 6067582 .. 6067960 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCAAAGGGAGGAATATCATTCGACTCCAAGTAATGGGTTAGTGAGAAGTTCTACACTCCTTTTGAATGGAAATTTATTGGAGGCTACAGAAGATGGAGATTTACCAAATCTTATGCCTATTTATAGTGACACTAACTCTATATCTATTGCCACTTGGTCCATTGTTTTTGTTGTCGTCCCTAACTTTCAAGCCCCAGCTTGCAAATGAGTTTTCTTTAATAAAAAAATTTGGGATTTTAGGGTCTTGCAAACCAATAATTGTTTTGTAATGTGTGCCTTACAAGAAGTTTATGTGTTTGTAGTGTGTGTTTGAAATAAATGTCAAAGACAATACACTTATACTTATGGAATTTGACATCACCACCTTTTTGTAA

mRNA sequence

ATGACTCAAAGGGAGGAATATCATTCGACTCCAAGTAATGGGTTAGTGAGAAGTTCTACACTCCTTTTGAATGGAAATTTATTGGAGGCTACAGAAGATGGAGATTTACCAAATCTTATGCCTATTTATAGTGACACTAACTCTATATCTATTGCCACTTGGTCCATTTGTGTGTTTGAAATAAATGTCAAAGACAATACACTTATACTTATGGAATTTGACATCACCACCTTTTTGTAA

Coding sequence (CDS)

ATGACTCAAAGGGAGGAATATCATTCGACTCCAAGTAATGGGTTAGTGAGAAGTTCTACACTCCTTTTGAATGGAAATTTATTGGAGGCTACAGAAGATGGAGATTTACCAAATCTTATGCCTATTTATAGTGACACTAACTCTATATCTATTGCCACTTGGTCCATTTGTGTGTTTGAAATAAATGTCAAAGACAATACACTTATACTTATGGAATTTGACATCACCACCTTTTTGTAA

Protein sequence

MTQREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTNSISIATWSICVFEINVKDNTLILMEFDITTFL

Homology

[Close]

BLAST of Cla97C05G087960 vs. NCBI nr
Match: XP_008438923.1 (PREDICTED: heparanase-like protein 2 [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 4.7e-15
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 2   TQREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSI 57
           +QREEYH TP+NGLVRSST+LLNGNLL+ TEDGDLP+L PIY D+N SI++ATWSI
Sbjct: 447 SQREEYHLTPNNGLVRSSTVLLNGNLLKTTEDGDLPDLTPIYRDSNSSITVATWSI 502

[Close]

BLAST of Cla97C05G087960 vs. NCBI nr
Match: XP_004134497.1 (PREDICTED: heparanase-like protein 2 isoform X2 [Cucumis sativus] >KGN57148.1 hypothetical protein Csa_3G165650 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 6.1e-15
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 2   TQREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSI 57
           +QREEYH  P+NGLVRSST+LLNGNLLE TEDGDLP+L PIY D+N SI+IATWSI
Sbjct: 447 SQREEYHLIPNNGLVRSSTVLLNGNLLETTEDGDLPDLTPIYRDSNSSITIATWSI 502

[Close]

BLAST of Cla97C05G087960 vs. NCBI nr
Match: XP_011651069.1 (PREDICTED: heparanase-like protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 6.1e-15
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 2   TQREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSI 57
           +QREEYH  P+NGLVRSST+LLNGNLLE TEDGDLP+L PIY D+N SI+IATWSI
Sbjct: 485 SQREEYHLIPNNGLVRSSTVLLNGNLLETTEDGDLPDLTPIYRDSNSSITIATWSI 540

[Close]

BLAST of Cla97C05G087960 vs. NCBI nr
Match: XP_022979750.1 (heparanase-like protein 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 3   QREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSI 57
           QREEYH TPSNGL++S T+LLNGN+LEATE+GDLPNL P+Y  TN S+SIATWSI
Sbjct: 464 QREEYHLTPSNGLLKSPTVLLNGNVLEATEEGDLPNLTPVYRQTNSSLSIATWSI 518

[Close]

BLAST of Cla97C05G087960 vs. NCBI nr
Match: XP_022979751.1 (heparanase-like protein 1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 3   QREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSI 57
           QREEYH TPSNGL++S T+LLNGN+LEATE+GDLPNL P+Y  TN S+SIATWSI
Sbjct: 427 QREEYHLTPSNGLLKSPTVLLNGNVLEATEEGDLPNLTPVYRQTNSSLSIATWSI 481

[Close]

BLAST of Cla97C05G087960 vs. TrEMBL
Match: tr|A0A1S3AY64|A0A1S3AY64_CUCME (heparanase-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103483878 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-15
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 2   TQREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSI 57
           +QREEYH TP+NGLVRSST+LLNGNLL+ TEDGDLP+L PIY D+N SI++ATWSI
Sbjct: 447 SQREEYHLTPNNGLVRSSTVLLNGNLLKTTEDGDLPDLTPIYRDSNSSITVATWSI 502

[Close]

BLAST of Cla97C05G087960 vs. TrEMBL
Match: tr|A0A0A0L5V7|A0A0A0L5V7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165650 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.1e-15
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 2   TQREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSI 57
           +QREEYH  P+NGLVRSST+LLNGNLLE TEDGDLP+L PIY D+N SI+IATWSI
Sbjct: 447 SQREEYHLIPNNGLVRSSTVLLNGNLLETTEDGDLPDLTPIYRDSNSSITIATWSI 502

[Close]

BLAST of Cla97C05G087960 vs. TrEMBL
Match: tr|A0A1S3BWF5|A0A1S3BWF5_CUCME (heparanase-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103494371 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-12
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 3   QREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSICVFEI 62
           +REEYH TP NGL+RSST+LLNG  LE T++G+LP+L PIY D+N SI+IATWSI    I
Sbjct: 117 EREEYHLTPQNGLLRSSTVLLNGKALELTKEGELPDLTPIYKDSNSSINIATWSIAFIVI 176

[Close]

BLAST of Cla97C05G087960 vs. TrEMBL
Match: tr|A0A0A0KUF1|A0A0A0KUF1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G043860 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.5e-12
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 2   TQREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSI 57
           T REEYH TP NGL+RSS +LLNG  L+ T +G+LPNL PIY D+N SI+IATWSI
Sbjct: 462 TPREEYHLTPQNGLLRSSNVLLNGKALQLTSEGELPNLTPIYKDSNSSINIATWSI 517

[Close]

BLAST of Cla97C05G087960 vs. TrEMBL
Match: tr|A0A0A0KTJ9|A0A0A0KTJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G390000 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 2   TQREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSICVFE 61
           TQREEYH TP NGL+RSST+LLNG  LE T +G++P+L P+Y D+N SISI  WSI    
Sbjct: 470 TQREEYHLTPQNGLLRSSTVLLNGKALELTNEGEVPDLTPVYRDSNSSISIPNWSIAFIV 529

[Close]

BLAST of Cla97C05G087960 vs. Swiss-Prot
Match: sp|Q9FF10|HPSE1_ARATH (Heparanase-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At5g07830 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-07
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 4   REEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTNS 49
           REEYH TP NG++RS T++LNG  L+ T  GD+P+L P+    NS
Sbjct: 476 REEYHLTPENGVLRSKTMVLNGKSLKPTATGDIPSLEPVLRSVNS 520

[Close]

BLAST of Cla97C05G087960 vs. Swiss-Prot
Match: sp|Q9FZP1|HPSE3_ARATH (Heparanase-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=At5g34940 PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 7.1e-07
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 3   QREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIY-SDTNSISIATWSI 57
           QREEYH T  +G + S T+LLNGN L+    GDLP + PI+ + T  I+IA +SI
Sbjct: 468 QREEYHLTAKDGNLHSQTMLLNGNALQVNSMGDLPPIEPIHINSTEPITIAPYSI 522

[Close]

BLAST of Cla97C05G087960 vs. Swiss-Prot
Match: sp|Q8L608|HPSE2_ARATH (Heparanase-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At5g61250 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.7e-04
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 4   REEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPI 43
           REEYH +P +G +RS  +LLNG  L  T  GD+P L P+
Sbjct: 472 REEYHLSPKDGDLRSKIMLLNGKPLVPTATGDIPKLEPV 510

[Close]

BLAST of Cla97C05G087960 vs. TAIR10
Match: AT5G07830.1 (glucuronidase 2)

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-08
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 4   REEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTNS 49
           REEYH TP NG++RS T++LNG  L+ T  GD+P+L P+    NS
Sbjct: 476 REEYHLTPENGVLRSKTMVLNGKSLKPTATGDIPSLEPVLRSVNS 520

[Close]

BLAST of Cla97C05G087960 vs. TAIR10
Match: AT5G34940.2 (glucuronidase 3)

HSP 1 Score: 54.3 bits (129), Expect = 4.0e-08
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 3   QREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIY-SDTNSISIATWSI 57
           QREEYH T  +G + S T+LLNGN L+    GDLP + PI+ + T  I+IA +SI
Sbjct: 468 QREEYHLTAKDGNLHSQTMLLNGNALQVNSMGDLPPIEPIHINSTEPITIAPYSI 522

[Close]

BLAST of Cla97C05G087960 vs. TAIR10
Match: AT5G61250.2 (glucuronidase 1)

HSP 1 Score: 44.7 bits (104), Expect = 3.1e-05
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 4   REEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPI 43
           REEYH +P +G +RS  +LLNG  L  T  GD+P L P+
Sbjct: 472 REEYHLSPKDGDLRSKIMLLNGKPLVPTATGDIPKLEPV 510

The following BLAST results are available for this feature:

BLAST of Cla97C05G087960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438923.1	4.7e-15	76.79	PREDICTED: heparanase-like protein 2 [Cucumis melo]	[more]
XP_004134497.1	6.1e-15	78.57	PREDICTED: heparanase-like protein 2 isoform X2 [Cucumis sativus] >KGN57148.1 hy...	[more]
XP_011651069.1	6.1e-15	78.57	PREDICTED: heparanase-like protein 2 isoform X1 [Cucumis sativus]	[more]
XP_022979750.1	1.4e-14	76.36	heparanase-like protein 1 isoform X1 [Cucurbita maxima]	[more]
XP_022979751.1	1.4e-14	76.36	heparanase-like protein 1 isoform X2 [Cucurbita maxima]	[more]

BLAST of Cla97C05G087960 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AY64\|A0A1S3AY64_CUCME	3.1e-15	76.79	heparanase-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103483878 PE=4 SV=1	[more]
tr\|A0A0A0L5V7\|A0A0A0L5V7_CUCSA	4.1e-15	78.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165650 PE=4 SV=1	[more]
tr\|A0A1S3BWF5\|A0A1S3BWF5_CUCME	3.2e-12	65.00	heparanase-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103494371 PE=4 SV=1	[more]
tr\|A0A0A0KUF1\|A0A0A0KUF1_CUCSA	5.5e-12	67.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G043860 PE=4 SV=1	[more]
tr\|A0A0A0KTJ9\|A0A0A0KTJ9_CUCSA	1.2e-11	62.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G390000 PE=4 SV=1	[more]

BLAST of Cla97C05G087960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FF10\|HPSE1_ARATH	1.9e-07	53.33	Heparanase-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At5g07830 PE=2 SV=1	[more]
sp\|Q9FZP1\|HPSE3_ARATH	7.1e-07	50.91	Heparanase-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=At5g34940 PE=2 SV=2	[more]
sp\|Q8L608\|HPSE2_ARATH	5.7e-04	51.28	Heparanase-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At5g61250 PE=2 SV=1	[more]

BLAST of Cla97C05G087960 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07830.1	1.0e-08	53.33	glucuronidase 2	[more]
AT5G34940.2	4.0e-08	50.91	glucuronidase 3	[more]
AT5G61250.2	3.1e-05	51.28	glucuronidase 1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G087960.1	Cla97C05G087960.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G087960	ClCG05G006380	Watermelon (Charleston Gray)	wcgwmbB229

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G087960	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G087960	Wild cucumber (PI 183967)	cpiwmbB490
Cla97C05G087960	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G087960	Cucumber (Chinese Long) v3	cucwmbB483
Cla97C05G087960	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G087960	Cucumber (Chinese Long) v2	cuwmbB465
Cla97C05G087960	Bottle gourd (USVL1VR-Ls)	lsiwmbB015
Cla97C05G087960	Bottle gourd (USVL1VR-Ls)	lsiwmbB330
Cla97C05G087960	Melon (DHL92) v3.6.1	medwmbB114
Cla97C05G087960	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G087960	Melon (DHL92) v3.5.1	mewmbB123
Cla97C05G087960	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G087960	Watermelon (Charleston Gray)	wcgwmbB269
Cla97C05G087960	Watermelon (97103) v1	wmwmbB206
Cla97C05G087960	Watermelon (97103) v1	wmwmbB402
Cla97C05G087960	Wax gourd	wgowmbB076
Cla97C05G087960	Wax gourd	wgowmbB178
Cla97C05G087960	Watermelon (97103) v2	wmbwmbB137
Cla97C05G087960	Silver-seed gourd	carwmbB0069
Cla97C05G087960	Silver-seed gourd	carwmbB0287
Cla97C05G087960	Silver-seed gourd	carwmbB0734
Cla97C05G087960	Silver-seed gourd	carwmbB1003
Cla97C05G087960	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G087960	Cucumber (Gy14) v2	cgybwmbB442
Cla97C05G087960	Cucumber (Gy14) v1	cgywmbB066
Cla97C05G087960	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G087960	Cucurbita maxima (Rimu)	cmawmbB001
Cla97C05G087960	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G087960	Cucurbita maxima (Rimu)	cmawmbB366
Cla97C05G087960	Cucurbita maxima (Rimu)	cmawmbB856
Cla97C05G087960	Cucurbita maxima (Rimu)	cmawmbB914
Cla97C05G087960	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G087960	Cucurbita moschata (Rifu)	cmowmbB351
Cla97C05G087960	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G087960	Cucurbita moschata (Rifu)	cmowmbB887