Cla97C05G087960.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G087960.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	heparanase-like protein 2
Location	Cla97Chr05 : 6067582 .. 6067960 (-)
Sequence length	240

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCAAAGGGAGGAATATCATTCGACTCCAAGTAATGGGTTAGTGAGAAGTTCTACACTCCTTTTGAATGGAAATTTATTGGAGGCTACAGAAGATGGAGATTTACCAAATCTTATGCCTATTTATAGTGACACTAACTCTATATCTATTGCCACTTGGTCCATTGTTTTTGTTGTCGTCCCTAACTTTCAAGCCCCAGCTTGCAAATGAGTTTTCTTTAATAAAAAAATTTGGGATTTTAGGGTCTTGCAAACCAATAATTGTTTTGTAATGTGTGCCTTACAAGAAGTTTATGTGTTTGTAGTGTGTGTTTGAAATAAATGTCAAAGACAATACACTTATACTTATGGAATTTGACATCACCACCTTTTTGTAA

mRNA sequence

ATGACTCAAAGGGAGGAATATCATTCGACTCCAAGTAATGGGTTAGTGAGAAGTTCTACACTCCTTTTGAATGGAAATTTATTGGAGGCTACAGAAGATGGAGATTTACCAAATCTTATGCCTATTTATAGTGACACTAACTCTATATCTATTGCCACTTGGTCCATTTGTGTGTTTGAAATAAATGTCAAAGACAATACACTTATACTTATGGAATTTGACATCACCACCTTTTTGTAA

Coding sequence (CDS)

ATGACTCAAAGGGAGGAATATCATTCGACTCCAAGTAATGGGTTAGTGAGAAGTTCTACACTCCTTTTGAATGGAAATTTATTGGAGGCTACAGAAGATGGAGATTTACCAAATCTTATGCCTATTTATAGTGACACTAACTCTATATCTATTGCCACTTGGTCCATTTGTGTGTTTGAAATAAATGTCAAAGACAATACACTTATACTTATGGAATTTGACATCACCACCTTTTTGTAA

Protein sequence

MTQREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTNSISIATWSICVFEINVKDNTLILMEFDITTFL

Homology

[Close]

BLAST of Cla97C05G087960.1 vs. NCBI nr
Match: XP_008438923.1 (PREDICTED: heparanase-like protein 2 [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 4.7e-15
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 2   TQREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSI 57
           +QREEYH TP+NGLVRSST+LLNGNLL+ TEDGDLP+L PIY D+N SI++ATWSI
Sbjct: 447 SQREEYHLTPNNGLVRSSTVLLNGNLLKTTEDGDLPDLTPIYRDSNSSITVATWSI 502

[Close]

BLAST of Cla97C05G087960.1 vs. NCBI nr
Match: XP_004134497.1 (PREDICTED: heparanase-like protein 2 isoform X2 [Cucumis sativus] >KGN57148.1 hypothetical protein Csa_3G165650 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 6.1e-15
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 2   TQREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSI 57
           +QREEYH  P+NGLVRSST+LLNGNLLE TEDGDLP+L PIY D+N SI+IATWSI
Sbjct: 447 SQREEYHLIPNNGLVRSSTVLLNGNLLETTEDGDLPDLTPIYRDSNSSITIATWSI 502

[Close]

BLAST of Cla97C05G087960.1 vs. NCBI nr
Match: XP_011651069.1 (PREDICTED: heparanase-like protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 6.1e-15
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 2   TQREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSI 57
           +QREEYH  P+NGLVRSST+LLNGNLLE TEDGDLP+L PIY D+N SI+IATWSI
Sbjct: 485 SQREEYHLIPNNGLVRSSTVLLNGNLLETTEDGDLPDLTPIYRDSNSSITIATWSI 540

[Close]

BLAST of Cla97C05G087960.1 vs. NCBI nr
Match: XP_022979750.1 (heparanase-like protein 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 3   QREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSI 57
           QREEYH TPSNGL++S T+LLNGN+LEATE+GDLPNL P+Y  TN S+SIATWSI
Sbjct: 464 QREEYHLTPSNGLLKSPTVLLNGNVLEATEEGDLPNLTPVYRQTNSSLSIATWSI 518

[Close]

BLAST of Cla97C05G087960.1 vs. NCBI nr
Match: XP_022979751.1 (heparanase-like protein 1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 3   QREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSI 57
           QREEYH TPSNGL++S T+LLNGN+LEATE+GDLPNL P+Y  TN S+SIATWSI
Sbjct: 427 QREEYHLTPSNGLLKSPTVLLNGNVLEATEEGDLPNLTPVYRQTNSSLSIATWSI 481

[Close]

BLAST of Cla97C05G087960.1 vs. TrEMBL
Match: tr|A0A1S3AY64|A0A1S3AY64_CUCME (heparanase-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103483878 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-15
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 2   TQREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSI 57
           +QREEYH TP+NGLVRSST+LLNGNLL+ TEDGDLP+L PIY D+N SI++ATWSI
Sbjct: 447 SQREEYHLTPNNGLVRSSTVLLNGNLLKTTEDGDLPDLTPIYRDSNSSITVATWSI 502

[Close]

BLAST of Cla97C05G087960.1 vs. TrEMBL
Match: tr|A0A0A0L5V7|A0A0A0L5V7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165650 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.1e-15
Identity = 44/56 (78.57%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 2   TQREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSI 57
           +QREEYH  P+NGLVRSST+LLNGNLLE TEDGDLP+L PIY D+N SI+IATWSI
Sbjct: 447 SQREEYHLIPNNGLVRSSTVLLNGNLLETTEDGDLPDLTPIYRDSNSSITIATWSI 502

[Close]

BLAST of Cla97C05G087960.1 vs. TrEMBL
Match: tr|A0A1S3BWF5|A0A1S3BWF5_CUCME (heparanase-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103494371 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-12
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 3   QREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSICVFEI 62
           +REEYH TP NGL+RSST+LLNG  LE T++G+LP+L PIY D+N SI+IATWSI    I
Sbjct: 117 EREEYHLTPQNGLLRSSTVLLNGKALELTKEGELPDLTPIYKDSNSSINIATWSIAFIVI 176

[Close]

BLAST of Cla97C05G087960.1 vs. TrEMBL
Match: tr|A0A0A0KUF1|A0A0A0KUF1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G043860 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.5e-12
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 2   TQREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSI 57
           T REEYH TP NGL+RSS +LLNG  L+ T +G+LPNL PIY D+N SI+IATWSI
Sbjct: 462 TPREEYHLTPQNGLLRSSNVLLNGKALQLTSEGELPNLTPIYKDSNSSINIATWSI 517

[Close]

BLAST of Cla97C05G087960.1 vs. TrEMBL
Match: tr|A0A0A0KTJ9|A0A0A0KTJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G390000 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 2   TQREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTN-SISIATWSICVFE 61
           TQREEYH TP NGL+RSST+LLNG  LE T +G++P+L P+Y D+N SISI  WSI    
Sbjct: 470 TQREEYHLTPQNGLLRSSTVLLNGKALELTNEGEVPDLTPVYRDSNSSISIPNWSIAFIV 529

[Close]

BLAST of Cla97C05G087960.1 vs. Swiss-Prot
Match: sp|Q9FF10|HPSE1_ARATH (Heparanase-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At5g07830 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-07
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 4   REEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTNS 49
           REEYH TP NG++RS T++LNG  L+ T  GD+P+L P+    NS
Sbjct: 476 REEYHLTPENGVLRSKTMVLNGKSLKPTATGDIPSLEPVLRSVNS 520

[Close]

BLAST of Cla97C05G087960.1 vs. Swiss-Prot
Match: sp|Q9FZP1|HPSE3_ARATH (Heparanase-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=At5g34940 PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 7.1e-07
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 3   QREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIY-SDTNSISIATWSI 57
           QREEYH T  +G + S T+LLNGN L+    GDLP + PI+ + T  I+IA +SI
Sbjct: 468 QREEYHLTAKDGNLHSQTMLLNGNALQVNSMGDLPPIEPIHINSTEPITIAPYSI 522

[Close]

BLAST of Cla97C05G087960.1 vs. Swiss-Prot
Match: sp|Q8L608|HPSE2_ARATH (Heparanase-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At5g61250 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.7e-04
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 4   REEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPI 43
           REEYH +P +G +RS  +LLNG  L  T  GD+P L P+
Sbjct: 472 REEYHLSPKDGDLRSKIMLLNGKPLVPTATGDIPKLEPV 510

[Close]

BLAST of Cla97C05G087960.1 vs. TAIR10
Match: AT5G07830.1 (glucuronidase 2)

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-08
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 4   REEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIYSDTNS 49
           REEYH TP NG++RS T++LNG  L+ T  GD+P+L P+    NS
Sbjct: 476 REEYHLTPENGVLRSKTMVLNGKSLKPTATGDIPSLEPVLRSVNS 520

[Close]

BLAST of Cla97C05G087960.1 vs. TAIR10
Match: AT5G34940.2 (glucuronidase 3)

HSP 1 Score: 54.3 bits (129), Expect = 4.0e-08
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 3   QREEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPIY-SDTNSISIATWSI 57
           QREEYH T  +G + S T+LLNGN L+    GDLP + PI+ + T  I+IA +SI
Sbjct: 468 QREEYHLTAKDGNLHSQTMLLNGNALQVNSMGDLPPIEPIHINSTEPITIAPYSI 522

[Close]

BLAST of Cla97C05G087960.1 vs. TAIR10
Match: AT5G61250.2 (glucuronidase 1)

HSP 1 Score: 44.7 bits (104), Expect = 3.1e-05
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 4   REEYHSTPSNGLVRSSTLLLNGNLLEATEDGDLPNLMPI 43
           REEYH +P +G +RS  +LLNG  L  T  GD+P L P+
Sbjct: 472 REEYHLSPKDGDLRSKIMLLNGKPLVPTATGDIPKLEPV 510

The following BLAST results are available for this feature:

BLAST of Cla97C05G087960.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438923.1	4.7e-15	76.79	PREDICTED: heparanase-like protein 2 [Cucumis melo]	[more]
XP_004134497.1	6.1e-15	78.57	PREDICTED: heparanase-like protein 2 isoform X2 [Cucumis sativus] >KGN57148.1 hy...	[more]
XP_011651069.1	6.1e-15	78.57	PREDICTED: heparanase-like protein 2 isoform X1 [Cucumis sativus]	[more]
XP_022979750.1	1.4e-14	76.36	heparanase-like protein 1 isoform X1 [Cucurbita maxima]	[more]
XP_022979751.1	1.4e-14	76.36	heparanase-like protein 1 isoform X2 [Cucurbita maxima]	[more]

BLAST of Cla97C05G087960.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AY64\|A0A1S3AY64_CUCME	3.1e-15	76.79	heparanase-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103483878 PE=4 SV=1	[more]
tr\|A0A0A0L5V7\|A0A0A0L5V7_CUCSA	4.1e-15	78.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165650 PE=4 SV=1	[more]
tr\|A0A1S3BWF5\|A0A1S3BWF5_CUCME	3.2e-12	65.00	heparanase-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103494371 PE=4 SV=1	[more]
tr\|A0A0A0KUF1\|A0A0A0KUF1_CUCSA	5.5e-12	67.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G043860 PE=4 SV=1	[more]
tr\|A0A0A0KTJ9\|A0A0A0KTJ9_CUCSA	1.2e-11	62.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G390000 PE=4 SV=1	[more]

BLAST of Cla97C05G087960.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FF10\|HPSE1_ARATH	1.9e-07	53.33	Heparanase-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At5g07830 PE=2 SV=1	[more]
sp\|Q9FZP1\|HPSE3_ARATH	7.1e-07	50.91	Heparanase-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=At5g34940 PE=2 SV=2	[more]
sp\|Q8L608\|HPSE2_ARATH	5.7e-04	51.28	Heparanase-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At5g61250 PE=2 SV=1	[more]

BLAST of Cla97C05G087960.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07830.1	1.0e-08	53.33	glucuronidase 2	[more]
AT5G34940.2	4.0e-08	50.91	glucuronidase 3	[more]
AT5G61250.2	3.1e-05	51.28	glucuronidase 1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C05G087960	Cla97C05G087960	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C05G087960.1.CDS.2	Cla97C05G087960.1.CDS.2	CDS
Cla97C05G087960.1.CDS.1	Cla97C05G087960.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C05G087960.1.exon.2	Cla97C05G087960.1.exon.2	exon
Cla97C05G087960.1.exon.1	Cla97C05G087960.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C05G087960.1	Cla97C05G087960.1-protein	polypeptide