ClCG05G000460 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTGCAAGACTCTCACTGTGATTTTTTCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATTTGAATATCTGGGGTCTCCACTTTTCAGTCCTATAAGGTGTCCAGATGTGTTCTTGGTTCATTTGATTTCTTTTTCCTTTTGAGCTCGAATTGCTGATAGTGATGTGTTCTTTTCTTTTTCTTTTCCGGGTTTTGGTTTCTTTAGCTGCCTCGGAATGTGCATGTTGGCGAATTTATTCTGCTTATTTGTGTTTCTGTCTGATATTACTCCCATTTAGGTGTGTGTTTTTCAATAGGCTATTTGATTCTGATCATTATTTGTGTTTCTGTTTGATATTACTCCCATTTAGGCGTGTGCTTTTCATTCTGATCGTGTTAATCTTCCGGCTGTGATTGTCAGCCCGTACAACTCGAACTCTCTCATCTCTGCTCTGGTTTCCTCTCAGGACTTTCCACAAACACTTGGAGCTAATAACTTTTTCCACAAGATGTGGAAAGTATGACGTGATTTTTGCAGATTGTTTCTACTTAGCCATGTGGGATGGAAGAATGAGATCAAAGCTTTGTGCATTCTCGCTTCTGGGTCGTACGTGTTTCAGTTGGTCTTCTATTAAATCCACCCAACATGTCGAACTCGGAGCTCTTACCAATGCTACCATGGCCTCTGGTTTTAGTTTGTGGCCTACACGCATTCATACTGCCGACACTGCTACTGCATTGAACTCCAATGTTGGGGATCTCTTCTCGTTTGGCTTTTGTTCTCGTTCTTATATCTCTCCGACCTCAAACCACGATATTTTGAATGCAACTTCCAAAGAATCTTGTCACTATGCAGCCAGTGATGATCATGTTAGTGGTGATGATGACGATGATCGTGAAGAACATGAAGAAGAGGACATGAACATCAATGACGAGGGTGTGATACAAGATGTAGATGCCATTATGGATATATTTCGTGGGTTCAGGAATGTAAATCGAACTCAAGTGAAAAATAAGCTTGAGCATTGCTGTATTAAGGTATCAGGAGAGTTGGTAGTAGCAGTACTTTCTCGGATCCGTAATGATTGGGAAGCAGCATTCACTTTTTTTGTTTGGGCTGGTAAGCAGCCTGGTTATGCCCACTCTGTGCGTGAATATCATTCAATGATTTCAATTCTTGGCAAAATGAGAAAGTTCGACACGGCATGGGCCTTGATCGATGAGATGAGAGGAGGGACAACGGGCTCTTCTCTAGTGAGCCCTCAAACCCTTCTAATCATGATTAGGAAATACTGTGCTGTTCATGATGTTGGTAAAGCTATAAATACCTTCCATGCTCATAAAAGATTTGGATTTAACATTGGACTAGAGGAATTTCAGAACCTTCTCTCCGCCCTCTGCCGTTACAAAAATGTGAAAGATGCTGAATATTTGCTGTTTTGCAACAAAGATGTGTTCCCATTTAACACAAAGAGTTTCAATATTATCCTCAATGGGTGGTGTAATATAATTGGCAGTCTTCGGGATGCCGAGAGAGTTTGGAAGGAGATGATGCAGAGAGGTATCAGTCATGATGCTGTCTCATATGCAAGTTTCATTTCTTGTTACTCAAAAACTCGCAACCTTTATAAGGTGCTCAGGCTTTTTGACGATATGAAGCAAATGAAAGTTGAACCTGATAGGAAAGTCTACAATGCAGTCATTCACGCTCTTGCCAAAGGTAGGCTTCTGAAAGAAGCTATCAATCTCATAAAAACAATGGAAGATAAGGGTATTATTGCAAATGTTGTTACTTATAACTCAGTAATCAAACCTCTATGCAAGGCCTGGAAATTTGATGAAGCTAGAGCGGTTTTTGATGAGCTGTTGCAGCGGGGCCTCTGCCCAACAATTCAGACTTATCATGCCTTCTTGAGATTCCTGAGAACGGAGGAAGAAATATTTGAGCTCTTGGAGAAGATGAGAAAAATGGGGTGCGATCCAACCGCTGAAACCTACATAATGTTGATCAGAAAGTTTTGCCGATGGCGCCAGCTTGATAATGTTTCCAGAATATGGCATGAAATGAGTGAAAATGGAATTAGTCCTGATCGCAGCTCTTATATGGTCTTAATACATGGTCTCTTCTTGAATGGAAAATTAGAAGATGCATATAAATACTATTTGGAAATGAAGGAAAAAGAGTTGCTTCCTGAACCAAAGATAGATGAGATACTACAAGCTTGGCTTGCTGGTAAGCCAATGTTTCAAGAGAAGCCATCAGATTGTTCTGGGGAAGGCAAGAACTCCAGATTGTTCCCCAAAAGGATTGATTTTCACCGACAACCTGAGATTAGAAAGGTTTCAAGAGATTGTGGTTTTTCATTTTGGAAGCAGTAGGATTTTGTAGATATCTTATCCCATCAACCTTGAGGTTCAAGTGGCTTGTTGGGCCGTTCGAGTGCACGACTTCAACCGTTCATCTGAGGTTCAGTTCAGGTGCCTTCGACCTCTCTCCATCTCACAGTGATCCTCTTTCCTTCCACTGCGCCATCAATACTTTTACGCGGTTCAAGTGCGGAGGACCATTGCCAACCTAAGTTACACTTGTACCCTCTCCATAGAGATTCTAATCTCTGATCTGACATGTTATTGAACTCATAAAAGAAAAGTGTCGAGGACCATTGATGGTAAAAGTCAAAGATGCAACCTTTAATTACTTCTCATCTTATTTGGTCTCAACTTTGTCATTAAGAAGTCATTCCAAATAGGCTCGAAACGAGTCATTGGCTGCATACACTGGTCCTATGGAACAACAAATTAATTTGATTTTTTTTTTTCTGGGTATATTGTTCTTTTGAACATAAATATCCTACTAGGATTATCATACAAGGGGAAGTAGCAGAGTATCTACTTTTTAAGATTGAAGTGATATATGTTCAATTCTTTTGGATAAACCTTTTAGTTTGTTTGATTGCACTTCTTTTTTCCTTTTTTTTTTATAAGATTGTTGTGCCACTAAGCACGAGATCTGA ATGTCTTGCAAGACTCTCACTGCGTGTGCTTTTCATTCTGATCGTGTTAATCTTCCGGCTGTGATTGTCAGCCCGTACAACTCGAACTCTCTCATCTCTGCTCTGCGGGGCCTCTGCCCAACAATTCAGACTTATCATGCCTTCTTGAGATTCCTGAGAACGGAGGAAGAAATATTTGAGCTCTTGGAGAAGATGAGAAAAATGGGGTGCGATCCAACCGCTGAAACCTACATAATGTTGATCAGAAAGTTTTGCCGATGGCGCCAGCTTGATAATGTTTCCAGAATATGGCATGAAATGAGTGAAAATGGAATTAGTCCTGATCGCAGCTCTTATATGGTCTTAATACATGGTCTCTTCTTGAATGGAAAATTAGAAGATGCATATAAATACTATTTGGAAATGAAGGAAAAAGAGTTGCTTCCTGAACCAAAGATAGATGAGATACTACAAGCTTGGCTTGCTGGTAAGCCAATGTTTCAAGAGAAGCCATCAGATTGTTCTGGGGAAGGCAAGAACTCCAGATTGTTCCCCAAAAGGATTGATTTTCACCGACAACCTGAGATTAGAAAGGTTTCAAGAGATTGTGATTGTTGTGCCACTAAGCACGAGATCTGA ATGTCTTGCAAGACTCTCACTGCGTGTGCTTTTCATTCTGATCGTGTTAATCTTCCGGCTGTGATTGTCAGCCCGTACAACTCGAACTCTCTCATCTCTGCTCTGCGGGGCCTCTGCCCAACAATTCAGACTTATCATGCCTTCTTGAGATTCCTGAGAACGGAGGAAGAAATATTTGAGCTCTTGGAGAAGATGAGAAAAATGGGGTGCGATCCAACCGCTGAAACCTACATAATGTTGATCAGAAAGTTTTGCCGATGGCGCCAGCTTGATAATGTTTCCAGAATATGGCATGAAATGAGTGAAAATGGAATTAGTCCTGATCGCAGCTCTTATATGGTCTTAATACATGGTCTCTTCTTGAATGGAAAATTAGAAGATGCATATAAATACTATTTGGAAATGAAGGAAAAAGAGTTGCTTCCTGAACCAAAGATAGATGAGATACTACAAGCTTGGCTTGCTGGTAAGCCAATGTTTCAAGAGAAGCCATCAGATTGTTCTGGGGAAGGCAAGAACTCCAGATTGTTCCCCAAAAGGATTGATTTTCACCGACAACCTGAGATTAGAAAGGTTTCAAGAGATTGTGATTGTTGTGCCACTAAGCACGAGATCTGA MSCKTLTACAFHSDRVNLPAVIVSPYNSNSLISALRGLCPTIQTYHAFLRFLRTEEEIFELLEKMRKMGCDPTAETYIMLIRKFCRWRQLDNVSRIWHEMSENGISPDRSSYMVLIHGLFLNGKLEDAYKYYLEMKEKELLPEPKIDEILQAWLAGKPMFQEKPSDCSGEGKNSRLFPKRIDFHRQPEIRKVSRDCDCCATKHEI
BLAST of ClCG05G000460 vs. Swiss-Prot
Match: PP383_ARATH (Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2) HSP 1 Score: 195.7 bits (496), Expect = 5.1e-49 Identity = 90/163 (55.21%), Postives = 117/163 (71.78%), Query Frame = 1
HSP 2 Score: 33.9 bits (76), Expect = 2.6e+00 Identity = 26/122 (21.31%), Postives = 50/122 (40.98%), Query Frame = 1
BLAST of ClCG05G000460 vs. Swiss-Prot
Match: PP233_ARATH (Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 3.3e-16 Identity = 38/115 (33.04%), Postives = 68/115 (59.13%), Query Frame = 1
HSP 2 Score: 32.3 bits (72), Expect = 7.4e+00 Identity = 19/70 (27.14%), Postives = 32/70 (45.71%), Query Frame = 1
BLAST of ClCG05G000460 vs. Swiss-Prot
Match: PP137_ARATH (Pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Arabidopsis thaliana GN=At1g80880 PE=2 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 2.2e-12 Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = 1
HSP 2 Score: 43.9 bits (102), Expect = 2.5e-03 Identity = 26/89 (29.21%), Postives = 41/89 (46.07%), Query Frame = 1
BLAST of ClCG05G000460 vs. Swiss-Prot
Match: PP112_ARATH (Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 2.5e-11 Identity = 36/108 (33.33%), Postives = 53/108 (49.07%), Query Frame = 1
BLAST of ClCG05G000460 vs. Swiss-Prot
Match: PP447_ARATH (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.6e-10 Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1
HSP 2 Score: 44.7 bits (104), Expect = 1.4e-03 Identity = 27/106 (25.47%), Postives = 49/106 (46.23%), Query Frame = 1
BLAST of ClCG05G000460 vs. TrEMBL
Match: A0A0A0L308_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118150 PE=4 SV=1) HSP 1 Score: 303.5 bits (776), Expect = 1.9e-79 Identity = 142/159 (89.31%), Postives = 151/159 (94.97%), Query Frame = 1
BLAST of ClCG05G000460 vs. TrEMBL
Match: A0A0A0L308_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118150 PE=4 SV=1) HSP 1 Score: 35.0 bits (79), Expect = 1.3e+02 Identity = 18/72 (25.00%), Postives = 35/72 (48.61%), Query Frame = 1
HSP 2 Score: 213.0 bits (541), Expect = 3.4e-52 Identity = 109/180 (60.56%), Postives = 131/180 (72.78%), Query Frame = 1
BLAST of ClCG05G000460 vs. TrEMBL
Match: B9I5U4_POPTR (Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0013s05050g PE=4 SV=2) HSP 1 Score: 40.8 bits (94), Expect = 2.3e+00 Identity = 24/79 (30.38%), Postives = 39/79 (49.37%), Query Frame = 1
HSP 2 Score: 213.0 bits (541), Expect = 3.4e-52 Identity = 109/180 (60.56%), Postives = 131/180 (72.78%), Query Frame = 1
BLAST of ClCG05G000460 vs. TrEMBL
Match: U7DWX5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0671s00210g PE=4 SV=1) HSP 1 Score: 40.4 bits (93), Expect = 3.0e+00 Identity = 24/79 (30.38%), Postives = 38/79 (48.10%), Query Frame = 1
HSP 2 Score: 213.0 bits (541), Expect = 3.4e-52 Identity = 101/171 (59.06%), Postives = 129/171 (75.44%), Query Frame = 1
BLAST of ClCG05G000460 vs. TrEMBL
Match: F6I5J0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00030 PE=4 SV=1) HSP 1 Score: 39.3 bits (90), Expect = 6.8e+00 Identity = 30/110 (27.27%), Postives = 50/110 (45.45%), Query Frame = 1
HSP 2 Score: 211.1 bits (536), Expect = 1.3e-51 Identity = 105/170 (61.76%), Postives = 127/170 (74.71%), Query Frame = 1
BLAST of ClCG05G000460 vs. TAIR10
Match: AT5G15010.1 (AT5G15010.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 195.7 bits (496), Expect = 2.9e-50 Identity = 90/163 (55.21%), Postives = 117/163 (71.78%), Query Frame = 1
HSP 2 Score: 33.9 bits (76), Expect = 1.4e-01 Identity = 26/122 (21.31%), Postives = 50/122 (40.98%), Query Frame = 1
BLAST of ClCG05G000460 vs. TAIR10
Match: AT3G15200.1 (AT3G15200.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 86.7 bits (213), Expect = 1.9e-17 Identity = 38/115 (33.04%), Postives = 68/115 (59.13%), Query Frame = 1
HSP 2 Score: 32.3 bits (72), Expect = 4.2e-01 Identity = 19/70 (27.14%), Postives = 32/70 (45.71%), Query Frame = 1
BLAST of ClCG05G000460 vs. TAIR10
Match: AT1G80880.1 (AT1G80880.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 73.9 bits (180), Expect = 1.3e-13 Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = 1
HSP 2 Score: 43.9 bits (102), Expect = 1.4e-04 Identity = 26/89 (29.21%), Postives = 41/89 (46.07%), Query Frame = 1
BLAST of ClCG05G000460 vs. TAIR10
Match: AT1G71060.1 (AT1G71060.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12 Identity = 36/108 (33.33%), Postives = 53/108 (49.07%), Query Frame = 1
BLAST of ClCG05G000460 vs. TAIR10
Match: AT5G65820.1 (AT5G65820.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 67.8 bits (164), Expect = 9.0e-12 Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1
HSP 2 Score: 44.7 bits (104), Expect = 8.1e-05 Identity = 27/106 (25.47%), Postives = 49/106 (46.23%), Query Frame = 1
BLAST of ClCG05G000460 vs. NCBI nr
Match: gi|659074841|ref|XP_008437825.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis melo]) HSP 1 Score: 303.9 bits (777), Expect = 2.1e-79 Identity = 145/160 (90.62%), Postives = 154/160 (96.25%), Query Frame = 1
BLAST of ClCG05G000460 vs. NCBI nr
Match: gi|659074841|ref|XP_008437825.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis melo]) HSP 1 Score: 35.8 bits (81), Expect = 1.1e+02 Identity = 19/72 (26.39%), Postives = 35/72 (48.61%), Query Frame = 1
HSP 2 Score: 303.5 bits (776), Expect = 2.8e-79 Identity = 142/159 (89.31%), Postives = 151/159 (94.97%), Query Frame = 1
BLAST of ClCG05G000460 vs. NCBI nr
Match: gi|778676742|ref|XP_011650654.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis sativus]) HSP 1 Score: 35.0 bits (79), Expect = 1.8e+02 Identity = 18/72 (25.00%), Postives = 35/72 (48.61%), Query Frame = 1
HSP 2 Score: 214.5 bits (545), Expect = 1.7e-52 Identity = 103/163 (63.19%), Postives = 125/163 (76.69%), Query Frame = 1
BLAST of ClCG05G000460 vs. NCBI nr
Match: gi|694380597|ref|XP_009366416.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Pyrus x bretschneideri]) HSP 1 Score: 213.8 bits (543), Expect = 2.9e-52 Identity = 104/171 (60.82%), Postives = 132/171 (77.19%), Query Frame = 1
BLAST of ClCG05G000460 vs. NCBI nr
Match: gi|694380597|ref|XP_009366416.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Pyrus x bretschneideri]) HSP 1 Score: 38.1 bits (87), Expect = 2.2e+01 Identity = 21/76 (27.63%), Postives = 36/76 (47.37%), Query Frame = 1
HSP 2 Score: 213.4 bits (542), Expect = 3.8e-52 Identity = 114/211 (54.03%), Postives = 145/211 (68.72%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|