ClCG03G007370 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G007370
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr03 : 8371473 .. 8371790 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGAAGCTCCCATCTTCCATTGCCGCTCTCCATTTTCCTCCTCTCCTTCCTTTTCTTCTTCTTCTTCCTCTGCTTGTCATGTAATGCCTTATCCCCAGATCGCAAATCCAACTTTCCCAGTTCGGATCGTACTTTATTGAGCTTACAGAGGAGGAGAGATCAACAAATCTCTAATTGCGGCGAAAAGGTTTCGGCTTTACAGTGTTCCCAGACCCCCAAATGCCGGTGGTGCCGGAGCGATGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCCTGTGATTGA

mRNA sequence

ATGGCAAGAAGCTCCCATCTTCCATTGCCGCTCTCCATTTTCCTCCTCTCCTTCCTTTTCTTCTTCTTCTTCCTCTGCTTGTCATGTAATGCCTTATCCCCAGATCGCAAATCCAACTTTCCCAGTTCGGATCGTACTTTATTGAGCTTACAGAGGAGGAGAGATCAACAAATCTCTAATTGCGGCGAAAAGGTTTCGGCTTTACAGTGTTCCCAGACCCCCAAATGCCGGTGGTGCCGGAGCGATGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCCTGTGATTGA

Coding sequence (CDS)

ATGGCAAGAAGCTCCCATCTTCCATTGCCGCTCTCCATTTTCCTCCTCTCCTTCCTTTTCTTCTTCTTCTTCCTCTGCTTGTCATGTAATGCCTTATCCCCAGATCGCAAATCCAACTTTCCCAGTTCGGATCGTACTTTATTGAGCTTACAGAGGAGGAGAGATCAACAAATCTCTAATTGCGGCGAAAAGGTTTCGGCTTTACAGTGTTCCCAGACCCCCAAATGCCGGTGGTGCCGGAGCGATGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCCTGTGATTGA

Protein sequence

MARSSHLPLPLSIFLLSFLFFFFFLCLSCNALSPDRKSNFPSSDRTLLSLQRRRDQQISNCGEKVSALQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD
Homology
[Close]
BLAST of ClCG03G007370 vs. TrEMBL
Match: A0A0A0LX55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G467180 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 5.1e-44
Identity = 91/103 (88.35%), Postives = 94/103 (91.26%), Query Frame = 1 

Query: 3   RSSHLPLPLSIFLLSFLFFFFFLCLSCNALSPDRKSNFPSSDRTLLSLQRRRDQQISNCG 62
           RSSHL  PLSIFL+SFLFFFF   +SCNALSPDRK N PSS RTL SLQRRRDQQISNCG
Sbjct: 4   RSSHLSSPLSIFLISFLFFFF---ISCNALSPDRKFNSPSSYRTLSSLQRRRDQQISNCG 63

Query: 63  EKVSALQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           EKVSALQCSQTPKCRWCRSD+IDDTCFTRAEALRLPQQVFSCD
Sbjct: 64  EKVSALQCSQTPKCRWCRSDIIDDTCFTRAEALRLPQQVFSCD 103

[Close]
BLAST of ClCG03G007370 vs. TrEMBL
Match: A0A067JNS3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21620 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.5e-16
Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 1 

Query: 16  LSFLFFFFFLCL----SCNALSPDRKSNFPSSDRTLLSLQRRRDQQISNCGEKVSALQCS 75
           +SF  F  FL      S +  S  +  +  +S R+LL+ QR   QQI NC   V+  QCS
Sbjct: 8   ISFSIFLIFLATLLQSSLSYASTTQDPSLIASHRSLLAAQRNAQQQIPNCSGMVARSQCS 67

Query: 76  QTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           Q PKCRWC+S+ +DD CF++ EA RLPQQVF CD
Sbjct: 68  QNPKCRWCKSEALDDMCFSKIEAWRLPQQVFVCD 101

[Close]
BLAST of ClCG03G007370 vs. TrEMBL
Match: A0A061GFG8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029626 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.5e-16
Identity = 51/100 (51.00%), Postives = 60/100 (60.00%), Query Frame = 1 

Query: 16  LSFLFFFFFLCL-------SCNALSPDR---KSNFPSSDRTLLSLQRRRDQQISNCGEKV 75
           LS LF   FL L       S ++ SPD    K    S  RTLL LQR    QI +CGE +
Sbjct: 8   LSALFPILFLLLLTLSQSSSSSSSSPDNITGKEPSVSRYRTLLGLQRNTKNQIPSCGEMM 67

Query: 76  SALQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           S  QC Q PKCRWC S+ +D+ CF++AEA RLPQQVF CD
Sbjct: 68  SRSQCLQNPKCRWCHSEALDNLCFSKAEAWRLPQQVFLCD 107

[Close]
BLAST of ClCG03G007370 vs. TrEMBL
Match: A0A0D2UJX6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G240500 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-13
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 1 

Query: 47  LLSLQRRRDQQISNCGEKVSALQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           L S + ++  QI NCGE VS  QC Q PKCRWCRS+ +DD CF +AEA RLPQQVF C+
Sbjct: 52  LASQRNKKMNQIPNCGEMVSRSQCLQNPKCRWCRSEALDDMCFKKAEAWRLPQQVFLCN 110

[Close]
BLAST of ClCG03G007370 vs. TrEMBL
Match: Q1G3T4_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-12
Identity = 47/98 (47.96%), Postives = 58/98 (59.18%), Query Frame = 1 

Query: 12  SIFLLSFLFFFFFLCLSCNALSPDRKSNFPSSDRTLLSLQRRRDQQISN----CGEKVSA 71
           S+FLL  L  FF L LS +  SP+  S     DR LL +Q       +N    C E  S 
Sbjct: 10  SLFLL--LIIFFLLLLSPSLSSPE--SEVHVLDRELLEIQTNPKPGKTNRKLKCCEMRSR 69

Query: 72  LQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
            QCS  P+CRWCRS+ +DD CF++AEALRLP QVF C+
Sbjct: 70  SQCSAFPRCRWCRSEALDDLCFSKAEALRLPSQVFLCE 103

[Close]
BLAST of ClCG03G007370 vs. NCBI nr
Match: gi|700210503|gb|KGN65599.1| (hypothetical protein Csa_1G467180 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 7.3e-44
Identity = 91/103 (88.35%), Postives = 94/103 (91.26%), Query Frame = 1 

Query: 3   RSSHLPLPLSIFLLSFLFFFFFLCLSCNALSPDRKSNFPSSDRTLLSLQRRRDQQISNCG 62
           RSSHL  PLSIFL+SFLFFFF   +SCNALSPDRK N PSS RTL SLQRRRDQQISNCG
Sbjct: 4   RSSHLSSPLSIFLISFLFFFF---ISCNALSPDRKFNSPSSYRTLSSLQRRRDQQISNCG 63

Query: 63  EKVSALQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           EKVSALQCSQTPKCRWCRSD+IDDTCFTRAEALRLPQQVFSCD
Sbjct: 64  EKVSALQCSQTPKCRWCRSDIIDDTCFTRAEALRLPQQVFSCD 103

[Close]
BLAST of ClCG03G007370 vs. NCBI nr
Match: gi|643704085|gb|KDP21149.1| (hypothetical protein JCGZ_21620 [Jatropha curcas])

HSP 1 Score: 92.0 bits (227), Expect = 6.5e-16
Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 1 

Query: 16  LSFLFFFFFLCL----SCNALSPDRKSNFPSSDRTLLSLQRRRDQQISNCGEKVSALQCS 75
           +SF  F  FL      S +  S  +  +  +S R+LL+ QR   QQI NC   V+  QCS
Sbjct: 8   ISFSIFLIFLATLLQSSLSYASTTQDPSLIASHRSLLAAQRNAQQQIPNCSGMVARSQCS 67

Query: 76  QTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           Q PKCRWC+S+ +DD CF++ EA RLPQQVF CD
Sbjct: 68  QNPKCRWCKSEALDDMCFSKIEAWRLPQQVFVCD 101

[Close]
BLAST of ClCG03G007370 vs. NCBI nr
Match: gi|590623300|ref|XP_007025285.1| (Uncharacterized protein TCM_029626 [Theobroma cacao])

HSP 1 Score: 92.0 bits (227), Expect = 6.5e-16
Identity = 51/100 (51.00%), Postives = 60/100 (60.00%), Query Frame = 1 

Query: 16  LSFLFFFFFLCL-------SCNALSPDR---KSNFPSSDRTLLSLQRRRDQQISNCGEKV 75
           LS LF   FL L       S ++ SPD    K    S  RTLL LQR    QI +CGE +
Sbjct: 8   LSALFPILFLLLLTLSQSSSSSSSSPDNITGKEPSVSRYRTLLGLQRNTKNQIPSCGEMM 67

Query: 76  SALQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           S  QC Q PKCRWC S+ +D+ CF++AEA RLPQQVF CD
Sbjct: 68  SRSQCLQNPKCRWCHSEALDNLCFSKAEAWRLPQQVFLCD 107

[Close]
BLAST of ClCG03G007370 vs. NCBI nr
Match: gi|763801396|gb|KJB68351.1| (hypothetical protein B456_010G240500 [Gossypium raimondii])

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-13
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 1 

Query: 47  LLSLQRRRDQQISNCGEKVSALQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           L S + ++  QI NCGE VS  QC Q PKCRWCRS+ +DD CF +AEA RLPQQVF C+
Sbjct: 52  LASQRNKKMNQIPNCGEMVSRSQCLQNPKCRWCRSEALDDMCFKKAEAWRLPQQVFLCN 110

[Close]
BLAST of ClCG03G007370 vs. NCBI nr
Match: gi|1021053540|gb|KZN11318.1| (hypothetical protein DCAR_003974 [Daucus carota subsp. sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-12
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 1 

Query: 10  PLSIFLLSFLFFFFFLCLSCNALSPDRKSNFPSSDRTLL--SLQRRRDQQISNCGEKVSA 69
           PL   LL  L F         A++ +      ++ R LL  + QR+ D+   NC E  + 
Sbjct: 10  PLLFLLLLLLLFVTVFRSPPFAVAGNLLKAGDATSRNLLITATQRKLDRAAQNCTEASTK 69

Query: 70  LQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           LQC    KCRWC+S+V+DDTCFT++EA RLP QVFSC+
Sbjct: 70  LQCLMNSKCRWCQSEVLDDTCFTKSEAFRLPSQVFSCE 107

The following BLAST results are available for this feature:
BLAST of ClCG03G007370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LX55_CUCSA5.1e-4488.35Uncharacterized protein OS=Cucumis sativus GN=Csa_1G467180 PE=4 SV=1[more]
A0A067JNS3_JATCU4.5e-1647.87Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21620 PE=4 SV=1[more]
A0A061GFG8_THECC4.5e-1651.00Uncharacterized protein OS=Theobroma cacao GN=TCM_029626 PE=4 SV=1[more]
A0A0D2UJX6_GOSRA2.7e-1361.02Uncharacterized protein OS=Gossypium raimondii GN=B456_010G240500 PE=4 SV=1[more]
Q1G3T4_ARATH1.0e-1247.96Putative uncharacterized protein OS=Arabidopsis thaliana PE=4 SV=1[more]
BLAST of ClCG03G007370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210503|gb|KGN65599.1|7.3e-4488.35hypothetical protein Csa_1G467180 [Cucumis sativus][more]
gi|643704085|gb|KDP21149.1|6.5e-1647.87hypothetical protein JCGZ_21620 [Jatropha curcas][more]
gi|590623300|ref|XP_007025285.1|6.5e-1651.00Uncharacterized protein TCM_029626 [Theobroma cacao][more]
gi|763801396|gb|KJB68351.1|3.9e-1361.02hypothetical protein B456_010G240500 [Gossypium raimondii][more]
gi|1021053540|gb|KZN11318.1|1.5e-1242.86hypothetical protein DCAR_003974 [Daucus carota subsp. sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G007370.1ClCG03G007370.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36896FAMILY NOT NAMEDcoord: 45..105
score: 1.5
NoneNo IPR availablePANTHERPTHR36896:SF1SUBFAMILY NOT NAMEDcoord: 45..105
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG03G007370Csa1G467180Cucumber (Chinese Long) v2cuwcgB036
ClCG03G007370MELO3C002684Melon (DHL92) v3.5.1mewcgB150
ClCG03G007370Cla019639Watermelon (97103) v1wcgwmB223
ClCG03G007370Cla97C03G058660Watermelon (97103) v2wcgwmbB186
ClCG03G007370CSPI01G21790Wild cucumber (PI 183967)cpiwcgB039
ClCG03G007370CmaCh13G005780Cucurbita maxima (Rimu)cmawcgB195
ClCG03G007370CmaCh18G004350Cucurbita maxima (Rimu)cmawcgB357
ClCG03G007370CmoCh18G004140Cucurbita moschata (Rifu)cmowcgB352
ClCG03G007370CmoCh13G006070Cucurbita moschata (Rifu)cmowcgB185
ClCG03G007370Lsi02G008380Bottle gourd (USVL1VR-Ls)lsiwcgB188
ClCG03G007370Cp4.1LG09g07950Cucurbita pepo (Zucchini)cpewcgB035
ClCG03G007370Cp4.1LG20g04810Cucurbita pepo (Zucchini)cpewcgB468
ClCG03G007370MELO3C002684.2Melon (DHL92) v3.6.1medwcgB142
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G007370Silver-seed gourdcarwcgB0144
ClCG03G007370Silver-seed gourdcarwcgB0532
ClCG03G007370Silver-seed gourdcarwcgB0773
ClCG03G007370Silver-seed gourdcarwcgB0932
ClCG03G007370Cucumber (Chinese Long) v3cucwcgB039
ClCG03G007370Cucumber (Chinese Long) v3cucwcgB483
ClCG03G007370Cucumber (Chinese Long) v3cucwcgB582
ClCG03G007370Watermelon (97103) v2wcgwmbB174
ClCG03G007370Watermelon (97103) v2wcgwmbB183
ClCG03G007370Watermelon (97103) v2wcgwmbB192
ClCG03G007370Wax gourdwcgwgoB332
ClCG03G007370Wax gourdwcgwgoB341
ClCG03G007370Watermelon (Charleston Gray)wcgwcgB093
ClCG03G007370Watermelon (Charleston Gray)wcgwcgB127
ClCG03G007370Cucumber (Gy14) v1cgywcgB027
ClCG03G007370Cucumber (Gy14) v1cgywcgB355
ClCG03G007370Cucumber (Gy14) v1cgywcgB388
ClCG03G007370Cucurbita maxima (Rimu)cmawcgB463
ClCG03G007370Cucurbita maxima (Rimu)cmawcgB583
ClCG03G007370Cucurbita maxima (Rimu)cmawcgB759
ClCG03G007370Cucurbita moschata (Rifu)cmowcgB582
ClCG03G007370Cucurbita moschata (Rifu)cmowcgB760
ClCG03G007370Wild cucumber (PI 183967)cpiwcgB486
ClCG03G007370Wild cucumber (PI 183967)cpiwcgB584
ClCG03G007370Cucumber (Chinese Long) v2cuwcgB462
ClCG03G007370Cucumber (Chinese Long) v2cuwcgB554
ClCG03G007370Melon (DHL92) v3.5.1mewcgB115
ClCG03G007370Melon (DHL92) v3.5.1mewcgB206
ClCG03G007370Melon (DHL92) v3.5.1mewcgB523
ClCG03G007370Watermelon (97103) v1wcgwmB238
ClCG03G007370Watermelon (97103) v1wcgwmB245
ClCG03G007370Cucurbita pepo (Zucchini)cpewcgB069
ClCG03G007370Cucurbita pepo (Zucchini)cpewcgB277
ClCG03G007370Cucurbita pepo (Zucchini)cpewcgB431
ClCG03G007370Bottle gourd (USVL1VR-Ls)lsiwcgB133
ClCG03G007370Cucumber (Gy14) v2cgybwcgB034
ClCG03G007370Cucumber (Gy14) v2cgybwcgB424
ClCG03G007370Cucumber (Gy14) v2cgybwcgB515
ClCG03G007370Melon (DHL92) v3.6.1medwcgB201
ClCG03G007370Melon (DHL92) v3.6.1medwcgB518