ClCG03G007370.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G007370.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr03 : 8371473 .. 8371790 (-)
Sequence length	318

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGAAGCTCCCATCTTCCATTGCCGCTCTCCATTTTCCTCCTCTCCTTCCTTTTCTTCTTCTTCTTCCTCTGCTTGTCATGTAATGCCTTATCCCCAGATCGCAAATCCAACTTTCCCAGTTCGGATCGTACTTTATTGAGCTTACAGAGGAGGAGAGATCAACAAATCTCTAATTGCGGCGAAAAGGTTTCGGCTTTACAGTGTTCCCAGACCCCCAAATGCCGGTGGTGCCGGAGCGATGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCCTGTGATTGA

mRNA sequence

ATGGCAAGAAGCTCCCATCTTCCATTGCCGCTCTCCATTTTCCTCCTCTCCTTCCTTTTCTTCTTCTTCTTCCTCTGCTTGTCATGTAATGCCTTATCCCCAGATCGCAAATCCAACTTTCCCAGTTCGGATCGTACTTTATTGAGCTTACAGAGGAGGAGAGATCAACAAATCTCTAATTGCGGCGAAAAGGTTTCGGCTTTACAGTGTTCCCAGACCCCCAAATGCCGGTGGTGCCGGAGCGATGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCCTGTGATTGA

Coding sequence (CDS)

ATGGCAAGAAGCTCCCATCTTCCATTGCCGCTCTCCATTTTCCTCCTCTCCTTCCTTTTCTTCTTCTTCTTCCTCTGCTTGTCATGTAATGCCTTATCCCCAGATCGCAAATCCAACTTTCCCAGTTCGGATCGTACTTTATTGAGCTTACAGAGGAGGAGAGATCAACAAATCTCTAATTGCGGCGAAAAGGTTTCGGCTTTACAGTGTTCCCAGACCCCCAAATGCCGGTGGTGCCGGAGCGATGTCATCGACGATACCTGCTTCACCAGAGCTGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCCTGTGATTGA

Protein sequence

MARSSHLPLPLSIFLLSFLFFFFFLCLSCNALSPDRKSNFPSSDRTLLSLQRRRDQQISNCGEKVSALQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD

Homology

[Close]

BLAST of ClCG03G007370.1 vs. TrEMBL
Match: A0A0A0LX55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G467180 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 5.1e-44
Identity = 91/103 (88.35%), Postives = 94/103 (91.26%), Query Frame = 1


Query: 3   RSSHLPLPLSIFLLSFLFFFFFLCLSCNALSPDRKSNFPSSDRTLLSLQRRRDQQISNCG 62
           RSSHL  PLSIFL+SFLFFFF   +SCNALSPDRK N PSS RTL SLQRRRDQQISNCG
Sbjct: 4   RSSHLSSPLSIFLISFLFFFF---ISCNALSPDRKFNSPSSYRTLSSLQRRRDQQISNCG 63

Query: 63  EKVSALQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           EKVSALQCSQTPKCRWCRSD+IDDTCFTRAEALRLPQQVFSCD
Sbjct: 64  EKVSALQCSQTPKCRWCRSDIIDDTCFTRAEALRLPQQVFSCD 103

[Close]

BLAST of ClCG03G007370.1 vs. TrEMBL
Match: A0A067JNS3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21620 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.5e-16
Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 1


Query: 16  LSFLFFFFFLCL----SCNALSPDRKSNFPSSDRTLLSLQRRRDQQISNCGEKVSALQCS 75
           +SF  F  FL      S +  S  +  +  +S R+LL+ QR   QQI NC   V+  QCS
Sbjct: 8   ISFSIFLIFLATLLQSSLSYASTTQDPSLIASHRSLLAAQRNAQQQIPNCSGMVARSQCS 67

Query: 76  QTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           Q PKCRWC+S+ +DD CF++ EA RLPQQVF CD
Sbjct: 68  QNPKCRWCKSEALDDMCFSKIEAWRLPQQVFVCD 101

[Close]

BLAST of ClCG03G007370.1 vs. TrEMBL
Match: A0A061GFG8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029626 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.5e-16
Identity = 51/100 (51.00%), Postives = 60/100 (60.00%), Query Frame = 1


Query: 16  LSFLFFFFFLCL-------SCNALSPDR---KSNFPSSDRTLLSLQRRRDQQISNCGEKV 75
           LS LF   FL L       S ++ SPD    K    S  RTLL LQR    QI +CGE +
Sbjct: 8   LSALFPILFLLLLTLSQSSSSSSSSPDNITGKEPSVSRYRTLLGLQRNTKNQIPSCGEMM 67

Query: 76  SALQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           S  QC Q PKCRWC S+ +D+ CF++AEA RLPQQVF CD
Sbjct: 68  SRSQCLQNPKCRWCHSEALDNLCFSKAEAWRLPQQVFLCD 107

[Close]

BLAST of ClCG03G007370.1 vs. TrEMBL
Match: A0A0D2UJX6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G240500 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-13
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 1


Query: 47  LLSLQRRRDQQISNCGEKVSALQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           L S + ++  QI NCGE VS  QC Q PKCRWCRS+ +DD CF +AEA RLPQQVF C+
Sbjct: 52  LASQRNKKMNQIPNCGEMVSRSQCLQNPKCRWCRSEALDDMCFKKAEAWRLPQQVFLCN 110

[Close]

BLAST of ClCG03G007370.1 vs. TrEMBL
Match: Q1G3T4_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-12
Identity = 47/98 (47.96%), Postives = 58/98 (59.18%), Query Frame = 1


Query: 12  SIFLLSFLFFFFFLCLSCNALSPDRKSNFPSSDRTLLSLQRRRDQQISN----CGEKVSA 71
           S+FLL  L  FF L LS +  SP+  S     DR LL +Q       +N    C E  S 
Sbjct: 10  SLFLL--LIIFFLLLLSPSLSSPE--SEVHVLDRELLEIQTNPKPGKTNRKLKCCEMRSR 69

Query: 72  LQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
            QCS  P+CRWCRS+ +DD CF++AEALRLP QVF C+
Sbjct: 70  SQCSAFPRCRWCRSEALDDLCFSKAEALRLPSQVFLCE 103

[Close]

BLAST of ClCG03G007370.1 vs. NCBI nr
Match: gi|700210503|gb|KGN65599.1| (hypothetical protein Csa_1G467180 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 7.3e-44
Identity = 91/103 (88.35%), Postives = 94/103 (91.26%), Query Frame = 1


Query: 3   RSSHLPLPLSIFLLSFLFFFFFLCLSCNALSPDRKSNFPSSDRTLLSLQRRRDQQISNCG 62
           RSSHL  PLSIFL+SFLFFFF   +SCNALSPDRK N PSS RTL SLQRRRDQQISNCG
Sbjct: 4   RSSHLSSPLSIFLISFLFFFF---ISCNALSPDRKFNSPSSYRTLSSLQRRRDQQISNCG 63

Query: 63  EKVSALQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           EKVSALQCSQTPKCRWCRSD+IDDTCFTRAEALRLPQQVFSCD
Sbjct: 64  EKVSALQCSQTPKCRWCRSDIIDDTCFTRAEALRLPQQVFSCD 103

[Close]

BLAST of ClCG03G007370.1 vs. NCBI nr
Match: gi|643704085|gb|KDP21149.1| (hypothetical protein JCGZ_21620 [Jatropha curcas])

HSP 1 Score: 92.0 bits (227), Expect = 6.5e-16
Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 1


Query: 16  LSFLFFFFFLCL----SCNALSPDRKSNFPSSDRTLLSLQRRRDQQISNCGEKVSALQCS 75
           +SF  F  FL      S +  S  +  +  +S R+LL+ QR   QQI NC   V+  QCS
Sbjct: 8   ISFSIFLIFLATLLQSSLSYASTTQDPSLIASHRSLLAAQRNAQQQIPNCSGMVARSQCS 67

Query: 76  QTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           Q PKCRWC+S+ +DD CF++ EA RLPQQVF CD
Sbjct: 68  QNPKCRWCKSEALDDMCFSKIEAWRLPQQVFVCD 101

[Close]

BLAST of ClCG03G007370.1 vs. NCBI nr
Match: gi|590623300|ref|XP_007025285.1| (Uncharacterized protein TCM_029626 [Theobroma cacao])

HSP 1 Score: 92.0 bits (227), Expect = 6.5e-16
Identity = 51/100 (51.00%), Postives = 60/100 (60.00%), Query Frame = 1


Query: 16  LSFLFFFFFLCL-------SCNALSPDR---KSNFPSSDRTLLSLQRRRDQQISNCGEKV 75
           LS LF   FL L       S ++ SPD    K    S  RTLL LQR    QI +CGE +
Sbjct: 8   LSALFPILFLLLLTLSQSSSSSSSSPDNITGKEPSVSRYRTLLGLQRNTKNQIPSCGEMM 67

Query: 76  SALQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           S  QC Q PKCRWC S+ +D+ CF++AEA RLPQQVF CD
Sbjct: 68  SRSQCLQNPKCRWCHSEALDNLCFSKAEAWRLPQQVFLCD 107

[Close]

BLAST of ClCG03G007370.1 vs. NCBI nr
Match: gi|763801396|gb|KJB68351.1| (hypothetical protein B456_010G240500 [Gossypium raimondii])

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-13
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 1


Query: 47  LLSLQRRRDQQISNCGEKVSALQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           L S + ++  QI NCGE VS  QC Q PKCRWCRS+ +DD CF +AEA RLPQQVF C+
Sbjct: 52  LASQRNKKMNQIPNCGEMVSRSQCLQNPKCRWCRSEALDDMCFKKAEAWRLPQQVFLCN 110

[Close]

BLAST of ClCG03G007370.1 vs. NCBI nr
Match: gi|1021053540|gb|KZN11318.1| (hypothetical protein DCAR_003974 [Daucus carota subsp. sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-12
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 1


Query: 10  PLSIFLLSFLFFFFFLCLSCNALSPDRKSNFPSSDRTLL--SLQRRRDQQISNCGEKVSA 69
           PL   LL  L F         A++ +      ++ R LL  + QR+ D+   NC E  + 
Sbjct: 10  PLLFLLLLLLLFVTVFRSPPFAVAGNLLKAGDATSRNLLITATQRKLDRAAQNCTEASTK 69

Query: 70  LQCSQTPKCRWCRSDVIDDTCFTRAEALRLPQQVFSCD 106
           LQC    KCRWC+S+V+DDTCFT++EA RLP QVFSC+
Sbjct: 70  LQCLMNSKCRWCQSEVLDDTCFTKSEAFRLPSQVFSCE 107

The following BLAST results are available for this feature:

BLAST of ClCG03G007370.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX55_CUCSA	5.1e-44	88.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G467180 PE=4 SV=1	[more]
A0A067JNS3_JATCU	4.5e-16	47.87	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21620 PE=4 SV=1	[more]
A0A061GFG8_THECC	4.5e-16	51.00	Uncharacterized protein OS=Theobroma cacao GN=TCM_029626 PE=4 SV=1	[more]
A0A0D2UJX6_GOSRA	2.7e-13	61.02	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G240500 PE=4 SV=1	[more]
Q1G3T4_ARATH	1.0e-12	47.96	Putative uncharacterized protein OS=Arabidopsis thaliana PE=4 SV=1	[more]

BLAST of ClCG03G007370.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210503\|gb\|KGN65599.1\|	7.3e-44	88.35	hypothetical protein Csa_1G467180 [Cucumis sativus]	[more]
gi\|643704085\|gb\|KDP21149.1\|	6.5e-16	47.87	hypothetical protein JCGZ_21620 [Jatropha curcas]	[more]
gi\|590623300\|ref\|XP_007025285.1\|	6.5e-16	51.00	Uncharacterized protein TCM_029626 [Theobroma cacao]	[more]
gi\|763801396\|gb\|KJB68351.1\|	3.9e-13	61.02	hypothetical protein B456_010G240500 [Gossypium raimondii]	[more]
gi\|1021053540\|gb\|KZN11318.1\|	1.5e-12	42.86	hypothetical protein DCAR_003974 [Daucus carota subsp. sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G007370	ClCG03G007370	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G007370.1	ClCG03G007370.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G007370.1.cds1	ClCG03G007370.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36896	FAMILY NOT NAMED	coord: 45..105 score: 1.5
None	No IPR available	PANTHER	PTHR36896:SF1	SUBFAMILY NOT NAMED	coord: 45..105 score: 1.5