ClCG03G003040 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G003040
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr03 : 3560102 .. 3560333 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAAACAGAAATTCGATCTTACATTCCAAATTGGATATCAATTGAGTATCCAATGGATAATTTAGGAGTTGATTTCACAATTTCTAATAGGTCTCCTTTTAAAGAGTAATGTTGTCTCTCTATTGTCTATTGAATATGTTAATCTAGCATTAAAAGCTTCAGGTTGCAAATATTGGTCAGACTCTCCAAAAGGGGCTTCCGAGATGTTGTATAGGAGTAGTTCATAG

mRNA sequence

ATGATTGAAACAGAAATTCGATCTTACATTCCAAATTGGATATCAATTGAGTATCCAATGGATAATTTAGGAGTTGATTTCACAATTTCTAATAGTAATGTTGTCTCTCTATTGTCTATTGAATATGTTAATCTAGCATTAAAAGCTTCAGGTTGCAAATATTGGTCAGACTCTCCAAAAGGGGCTTCCGAGATGTTGTATAGGAGTAGTTCATAG

Coding sequence (CDS)

ATGATTGAAACAGAAATTCGATCTTACATTCCAAATTGGATATCAATTGAGTATCCAATGGATAATTTAGGAGTTGATTTCACAATTTCTAATAGTAATGTTGTCTCTCTATTGTCTATTGAATATGTTAATCTAGCATTAAAAGCTTCAGGTTGCAAATATTGGTCAGACTCTCCAAAAGGGGCTTCCGAGATGTTGTATAGGAGTAGTTCATAG

Protein sequence

MIETEIRSYIPNWISIEYPMDNLGVDFTISNSNVVSLLSIEYVNLALKASGCKYWSDSPKGASEMLYRSSS

Homology

[Close]

BLAST of ClCG03G003040 vs. TrEMBL
Match: A0A0A0LU68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046910 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-12
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 1   MIETEIRSYIPNWISIEYPMDNLGVDFTISNS------NVVSLLSIEYVNLALKA--SGC 60
           MIETEIRSYIP+WIS+EY  DN+G D  +S+S      NV S LSIE  NLAL+   SG 
Sbjct: 392 MIETEIRSYIPDWISVEYSGDNVGADAPVSDSSPSETRNVASPLSIESGNLALEVMPSGR 451

Query: 61  KYWSDSPKG 62
           KYWSDSPKG
Sbjct: 452 KYWSDSPKG 460

[Close]

BLAST of ClCG03G003040 vs. NCBI nr
Match: gi|659067328|ref|XP_008438898.1| (PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X1 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 4.5e-13
Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = 1


Query: 1   MIETEIRSYIPNWISIEYPMDNLGVDFTISNS------NVVSLLSIEYVNLALKA--SGC 60
           MIETEIRSYIP+WIS+EY +DN+G D  IS+S      NV S LSIE  NLAL+   SG 
Sbjct: 392 MIETEIRSYIPDWISVEYSVDNVGADVAISDSSPSETRNVASPLSIESGNLALEVMPSGR 451

Query: 61  KYWSDSPKG 62
           KYWSDSPKG
Sbjct: 452 KYWSDSPKG 460

[Close]

BLAST of ClCG03G003040 vs. NCBI nr
Match: gi|659067348|ref|XP_008438978.1| (PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 4.5e-13
Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = 1


Query: 1   MIETEIRSYIPNWISIEYPMDNLGVDFTISNS------NVVSLLSIEYVNLALKA--SGC 60
           MIETEIRSYIP+WIS+EY +DN+G D  IS+S      NV S LSIE  NLAL+   SG 
Sbjct: 392 MIETEIRSYIPDWISVEYSVDNVGADVAISDSSPSETRNVASPLSIESGNLALEVMPSGR 451

Query: 61  KYWSDSPKG 62
           KYWSDSPKG
Sbjct: 452 KYWSDSPKG 460

[Close]

BLAST of ClCG03G003040 vs. NCBI nr
Match: gi|778657919|ref|XP_011651796.1| (PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X3 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-12
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 1   MIETEIRSYIPNWISIEYPMDNLGVDFTISNS------NVVSLLSIEYVNLALKA--SGC 60
           MIETEIRSYIP+WIS+EY  DN+G D  +S+S      NV S LSIE  NLAL+   SG 
Sbjct: 392 MIETEIRSYIPDWISVEYSGDNVGADAPVSDSSPSETRNVASPLSIESGNLALEVMPSGR 451

Query: 61  KYWSDSPKG 62
           KYWSDSPKG
Sbjct: 452 KYWSDSPKG 460

[Close]

BLAST of ClCG03G003040 vs. NCBI nr
Match: gi|449469727|ref|XP_004152570.1| (PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X1 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-12
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 1   MIETEIRSYIPNWISIEYPMDNLGVDFTISNS------NVVSLLSIEYVNLALKA--SGC 60
           MIETEIRSYIP+WIS+EY  DN+G D  +S+S      NV S LSIE  NLAL+   SG 
Sbjct: 392 MIETEIRSYIPDWISVEYSGDNVGADAPVSDSSPSETRNVASPLSIESGNLALEVMPSGR 451

Query: 61  KYWSDSPKG 62
           KYWSDSPKG
Sbjct: 452 KYWSDSPKG 460

The following BLAST results are available for this feature:

BLAST of ClCG03G003040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU68_CUCSA	2.0e-12	63.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046910 PE=4 SV=1	[more]

BLAST of ClCG03G003040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067328\|ref\|XP_008438898.1\|	4.5e-13	65.22	PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X1 [Cucumis mel...	[more]
gi\|659067348\|ref\|XP_008438978.1\|	4.5e-13	65.22	PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Cucumis mel...	[more]
gi\|778657919\|ref\|XP_011651796.1\|	2.9e-12	63.77	PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X3 [Cucumis sat...	[more]
gi\|449469727\|ref\|XP_004152570.1\|	2.9e-12	63.77	PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X1 [Cucumis sat...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG03G003040.1	ClCG03G003040.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG03G003040	Cucurbita pepo (Zucchini)	cpewcgB036
ClCG03G003040	Bottle gourd (USVL1VR-Ls)	lsiwcgB184
ClCG03G003040	Cucumber (Gy14) v2	cgybwcgB033
ClCG03G003040	Melon (DHL92) v3.6.1	medwcgB144
ClCG03G003040	Silver-seed gourd	carwcgB0480
ClCG03G003040	Cucumber (Chinese Long) v3	cucwcgB038
ClCG03G003040	Watermelon (97103) v2	wcgwmbB186
ClCG03G003040	Wax gourd	wcgwgoB345
ClCG03G003040	Cucumber (Gy14) v1	cgywcgB126
ClCG03G003040	Cucurbita maxima (Rimu)	cmawcgB355
ClCG03G003040	Cucurbita moschata (Rifu)	cmowcgB350
ClCG03G003040	Wild cucumber (PI 183967)	cpiwcgB038
ClCG03G003040	Cucumber (Chinese Long) v2	cuwcgB035
ClCG03G003040	Melon (DHL92) v3.5.1	mewcgB152
ClCG03G003040	Watermelon (97103) v1	wcgwmB223