ClCG03G003040.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G003040.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr03 : 3560102 .. 3560333 (-)
Sequence length	216

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAAACAGAAATTCGATCTTACATTCCAAATTGGATATCAATTGAGTATCCAATGGATAATTTAGGAGTTGATTTCACAATTTCTAATAGGTCTCCTTTTAAAGAGTAATGTTGTCTCTCTATTGTCTATTGAATATGTTAATCTAGCATTAAAAGCTTCAGGTTGCAAATATTGGTCAGACTCTCCAAAAGGGGCTTCCGAGATGTTGTATAGGAGTAGTTCATAG

mRNA sequence

ATGATTGAAACAGAAATTCGATCTTACATTCCAAATTGGATATCAATTGAGTATCCAATGGATAATTTAGGAGTTGATTTCACAATTTCTAATAGTAATGTTGTCTCTCTATTGTCTATTGAATATGTTAATCTAGCATTAAAAGCTTCAGGTTGCAAATATTGGTCAGACTCTCCAAAAGGGGCTTCCGAGATGTTGTATAGGAGTAGTTCATAG

Coding sequence (CDS)

ATGATTGAAACAGAAATTCGATCTTACATTCCAAATTGGATATCAATTGAGTATCCAATGGATAATTTAGGAGTTGATTTCACAATTTCTAATAGTAATGTTGTCTCTCTATTGTCTATTGAATATGTTAATCTAGCATTAAAAGCTTCAGGTTGCAAATATTGGTCAGACTCTCCAAAAGGGGCTTCCGAGATGTTGTATAGGAGTAGTTCATAG

Protein sequence

MIETEIRSYIPNWISIEYPMDNLGVDFTISNSNVVSLLSIEYVNLALKASGCKYWSDSPKGASEMLYRSSS

Homology

[Close]

BLAST of ClCG03G003040.1 vs. TrEMBL
Match: A0A0A0LU68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046910 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-12
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 1   MIETEIRSYIPNWISIEYPMDNLGVDFTISNS------NVVSLLSIEYVNLALKA--SGC 60
           MIETEIRSYIP+WIS+EY  DN+G D  +S+S      NV S LSIE  NLAL+   SG 
Sbjct: 392 MIETEIRSYIPDWISVEYSGDNVGADAPVSDSSPSETRNVASPLSIESGNLALEVMPSGR 451

Query: 61  KYWSDSPKG 62
           KYWSDSPKG
Sbjct: 452 KYWSDSPKG 460

[Close]

BLAST of ClCG03G003040.1 vs. NCBI nr
Match: gi|659067328|ref|XP_008438898.1| (PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X1 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 4.5e-13
Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = 1


Query: 1   MIETEIRSYIPNWISIEYPMDNLGVDFTISNS------NVVSLLSIEYVNLALKA--SGC 60
           MIETEIRSYIP+WIS+EY +DN+G D  IS+S      NV S LSIE  NLAL+   SG 
Sbjct: 392 MIETEIRSYIPDWISVEYSVDNVGADVAISDSSPSETRNVASPLSIESGNLALEVMPSGR 451

Query: 61  KYWSDSPKG 62
           KYWSDSPKG
Sbjct: 452 KYWSDSPKG 460

[Close]

BLAST of ClCG03G003040.1 vs. NCBI nr
Match: gi|659067348|ref|XP_008438978.1| (PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 4.5e-13
Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = 1


Query: 1   MIETEIRSYIPNWISIEYPMDNLGVDFTISNS------NVVSLLSIEYVNLALKA--SGC 60
           MIETEIRSYIP+WIS+EY +DN+G D  IS+S      NV S LSIE  NLAL+   SG 
Sbjct: 392 MIETEIRSYIPDWISVEYSVDNVGADVAISDSSPSETRNVASPLSIESGNLALEVMPSGR 451

Query: 61  KYWSDSPKG 62
           KYWSDSPKG
Sbjct: 452 KYWSDSPKG 460

[Close]

BLAST of ClCG03G003040.1 vs. NCBI nr
Match: gi|778657919|ref|XP_011651796.1| (PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X3 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-12
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 1   MIETEIRSYIPNWISIEYPMDNLGVDFTISNS------NVVSLLSIEYVNLALKA--SGC 60
           MIETEIRSYIP+WIS+EY  DN+G D  +S+S      NV S LSIE  NLAL+   SG 
Sbjct: 392 MIETEIRSYIPDWISVEYSGDNVGADAPVSDSSPSETRNVASPLSIESGNLALEVMPSGR 451

Query: 61  KYWSDSPKG 62
           KYWSDSPKG
Sbjct: 452 KYWSDSPKG 460

[Close]

BLAST of ClCG03G003040.1 vs. NCBI nr
Match: gi|449469727|ref|XP_004152570.1| (PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X1 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-12
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 1   MIETEIRSYIPNWISIEYPMDNLGVDFTISNS------NVVSLLSIEYVNLALKA--SGC 60
           MIETEIRSYIP+WIS+EY  DN+G D  +S+S      NV S LSIE  NLAL+   SG 
Sbjct: 392 MIETEIRSYIPDWISVEYSGDNVGADAPVSDSSPSETRNVASPLSIESGNLALEVMPSGR 451

Query: 61  KYWSDSPKG 62
           KYWSDSPKG
Sbjct: 452 KYWSDSPKG 460

The following BLAST results are available for this feature:

BLAST of ClCG03G003040.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU68_CUCSA	2.0e-12	63.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046910 PE=4 SV=1	[more]

BLAST of ClCG03G003040.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067328\|ref\|XP_008438898.1\|	4.5e-13	65.22	PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X1 [Cucumis mel...	[more]
gi\|659067348\|ref\|XP_008438978.1\|	4.5e-13	65.22	PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Cucumis mel...	[more]
gi\|778657919\|ref\|XP_011651796.1\|	2.9e-12	63.77	PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X3 [Cucumis sat...	[more]
gi\|449469727\|ref\|XP_004152570.1\|	2.9e-12	63.77	PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X1 [Cucumis sat...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G003040	ClCG03G003040	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G003040.1	ClCG03G003040.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G003040.1.cds2	ClCG03G003040.1.cds2	CDS
ClCG03G003040.1.cds1	ClCG03G003040.1.cds1	CDS