ClCG02G008530 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACATCCAAAGATAATTGTTCTAAAACTTCAAGTGACACTTACAGAAGACTAACTACTCATAGCGGCTCCAAGGAAATGCAACAATTTAATGAGCAACCAACCTTTGAGATCACAAGGAACATATGGGAGTGGCTCTCGAGGGACCCAAAAGTTGGGGTCGGCATCAGAGAAAATCTTGCACTTGAGAAGCACATCTCAACTTCTGAACAATCAAGCAAGGAGGCATCACACCCAAATATAATGTCAGTCATGATGGCCAATGTGGGAACTAGTGAAGAAAGGATGGTTGAGCTCGAAAGGAAAGTTAGCATGTTGTTAAAGGCAGTTGAAGAAAGGGATTATGAAATTGCATCTCTCAAGAATCATATTGAGAGTCGTGTTGAATCAAGCCATACACTCGCAGTCAAGAACAATAGGGAAGAATGTTTTACAAGAAAGTCAACCACAAGATTCAACTTCAATTGCTTCGTTGTTTGTTCAACAATTGCAGGAGATGATTGCAAACTCCATCAAGGCTTAATATGGTAGACCTAGTCAAACTTCCCTCTTGTATTCCAAACCATATACAAAAAGGATTGACAACCTAAGGATGCCAAATGGGTACCAACCACTCAAGTTCCAACAGTTTGATGGGAAGGGCAACCCAAAGCAACATGTTGCTCAGGTCATTGAAACATGTAAAAATGCAGGAACCAGAGGAGATTTGCTAGTCAAACGGTTCGTTCGAACTCTGAAGGAAAATGCCTTCGACTGGTACACCGAACTTGAAACTATTAATAGTTGGAGGTAGCTTGAATGAGAATTCATCAATTGTTTCTACAGTACTAGGCGTATCGTTAGTATGATAGAGCTTGATAAGCACTTTAAAAGGTAACTCTCGTACGTGGGAGTTGCGCTTTATGTAGTTTAATCCCACGTCTCTTGATTGCTCTCTTAATAAAGACCTGCAAAAGAAACAGAGAAAGGAAGGTTTTTTTCTTGATAAAAATTTTCTTTAGTTTCCTCCCTTTATCAAGGATCCACAATCCTTTATTTCATCACATAGAGAATAGGAGAGGCTCATGCTGGTGGTGTTTAGAGTCAACAACGAATGTAATCTTCTATCTCTAAAGCATACTTAACCCTGAATGATGTTCTGTAATTTTTTCCCAATGTATTGGTATTTTAAAATCCCAATTTATTTCGAATTTGGTTCTGTATTGCTTCTGCTGTGTTAGGGATTTCAACCCTTTCACATCAAGCATAGGATCATGAGCCCGCACAACCATTTCATTGGAACGAGTCATGCTCCTTTACAACATTAGGAAAATCGCCCCTATTAACTTAGGAGGGATTATAAGGTAAGGAATGGTGGAGTGTGCCCTAGGATGAGAGGGCGCTTGTTCTTTTCTTCCCTCATATGCAAGTTGTGTGCTCGAGTAGATGTGGTGGTGGATGCAACAGAGGAATGTTGCAAAGTCAAGCCAGCAATTGATTTAGGCTTGATCAAGAGGCTTCAAGGAAGTATGGCCACTAGGAAGGGCAAGACCTTGATAAGCACTTGA ATGACATCCAAAGATAATTGTTCTAAAACTTCAAGTGACACTTACAGAAGACTAACTACTCATAGCGGCTCCAAGGAAATGCAACAATTTAATGAGCAACCAACCTTTGAGATCACAAGGAACATATGGGAGTGGCTCTCGAGGGACCCAAAAGTTGGGGTCGGCATCAGAGAAAATCTTGCACTTGAGAAGCACATCTCAACTTCTGAACAATCAAGCAAGGAGGCATCACACCCAAATATAATGTCAGTCATGATGGCCAATGTGGGAACTAGTGAAGAAAGGATGGTTGAGCTCGAAAGGAAAGTTAGCATGTTGTTAAAGGCAGTTGAAGAAAGGGATTATGAAATTGCATCTCTCAAGAATCATATTGAGAGTCGTGTTGAATCAAGCCATACACTCGCAGTCAAGAACAATAGGGAAGAATGTTTTACAAGAAAGTCAACCACAAGATTCAACTTCAATTGCTTCGTTGTTTGTTCAACAATTGCAGGAGATGATTGCAAACTCCATCAAGGCTTAATATGGATGCCAAATGGGTACCAACCACTCAAGTTCCAACAGTTTGATGGGAAGGGCAACCCAAAGCAACATGTTGCTCAGGTCATTGAAACATGTAAAAATGCAGGAACCAGAGGAGATTTGCTAGTCAAACGGTTCGTTCGAACTCTGAAGGAAAATGCCTTCGACTGGTACACCGAACTTGAAACTATTAATAGTTGGAGGATGAGAGGGCGCTTGTTCTTTTCTTCCCTCATATGCAAGTTGTGTGCTCGAGTAGATGTGGTGGTGGATGCAACAGAGGAATGTTGCAAAGTCAAGCCAGCAATTGATTTAGGCTTGATCAAGAGGCTTCAAGGAAGTATGGCCACTAGGAAGGGCAAGACCTTGATAAGCACTTGA ATGACATCCAAAGATAATTGTTCTAAAACTTCAAGTGACACTTACAGAAGACTAACTACTCATAGCGGCTCCAAGGAAATGCAACAATTTAATGAGCAACCAACCTTTGAGATCACAAGGAACATATGGGAGTGGCTCTCGAGGGACCCAAAAGTTGGGGTCGGCATCAGAGAAAATCTTGCACTTGAGAAGCACATCTCAACTTCTGAACAATCAAGCAAGGAGGCATCACACCCAAATATAATGTCAGTCATGATGGCCAATGTGGGAACTAGTGAAGAAAGGATGGTTGAGCTCGAAAGGAAAGTTAGCATGTTGTTAAAGGCAGTTGAAGAAAGGGATTATGAAATTGCATCTCTCAAGAATCATATTGAGAGTCGTGTTGAATCAAGCCATACACTCGCAGTCAAGAACAATAGGGAAGAATGTTTTACAAGAAAGTCAACCACAAGATTCAACTTCAATTGCTTCGTTGTTTGTTCAACAATTGCAGGAGATGATTGCAAACTCCATCAAGGCTTAATATGGATGCCAAATGGGTACCAACCACTCAAGTTCCAACAGTTTGATGGGAAGGGCAACCCAAAGCAACATGTTGCTCAGGTCATTGAAACATGTAAAAATGCAGGAACCAGAGGAGATTTGCTAGTCAAACGGTTCGTTCGAACTCTGAAGGAAAATGCCTTCGACTGGTACACCGAACTTGAAACTATTAATAGTTGGAGGATGAGAGGGCGCTTGTTCTTTTCTTCCCTCATATGCAAGTTGTGTGCTCGAGTAGATGTGGTGGTGGATGCAACAGAGGAATGTTGCAAAGTCAAGCCAGCAATTGATTTAGGCTTGATCAAGAGGCTTCAAGGAAGTATGGCCACTAGGAAGGGCAAGACCTTGATAAGCACTTGA MTSKDNCSKTSSDTYRRLTTHSGSKEMQQFNEQPTFEITRNIWEWLSRDPKVGVGIRENLALEKHISTSEQSSKEASHPNIMSVMMANVGTSEERMVELERKVSMLLKAVEERDYEIASLKNHIESRVESSHTLAVKNNREECFTRKSTTRFNFNCFVVCSTIAGDDCKLHQGLIWMPNGYQPLKFQQFDGKGNPKQHVAQVIETCKNAGTRGDLLVKRFVRTLKENAFDWYTELETINSWRMRGRLFFSSLICKLCARVDVVVDATEECCKVKPAIDLGLIKRLQGSMATRKGKTLIST
BLAST of ClCG02G008530 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 2.9e-36 Identity = 105/263 (39.92%), Postives = 150/263 (57.03%), Query Frame = 1
BLAST of ClCG02G008530 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 5.6e-35 Identity = 97/232 (41.81%), Postives = 137/232 (59.05%), Query Frame = 1
BLAST of ClCG02G008530 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 2.6e-32 Identity = 76/134 (56.72%), Postives = 100/134 (74.63%), Query Frame = 1
BLAST of ClCG02G008530 vs. TrEMBL
Match: A5C4T7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020798 PE=4 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 2.0e-24 Identity = 72/175 (41.14%), Postives = 98/175 (56.00%), Query Frame = 1
BLAST of ClCG02G008530 vs. TrEMBL
Match: M5Y2U9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb024107mg PE=4 SV=1) HSP 1 Score: 107.5 bits (267), Expect = 3.0e-20 Identity = 73/204 (35.78%), Postives = 100/204 (49.02%), Query Frame = 1
BLAST of ClCG02G008530 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]) HSP 1 Score: 160.6 bits (405), Expect = 4.2e-36 Identity = 105/263 (39.92%), Postives = 150/263 (57.03%), Query Frame = 1
BLAST of ClCG02G008530 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo]) HSP 1 Score: 156.4 bits (394), Expect = 8.0e-35 Identity = 97/232 (41.81%), Postives = 137/232 (59.05%), Query Frame = 1
BLAST of ClCG02G008530 vs. NCBI nr
Match: gi|307135887|gb|ADN33752.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]) HSP 1 Score: 147.5 bits (371), Expect = 3.7e-32 Identity = 76/134 (56.72%), Postives = 100/134 (74.63%), Query Frame = 1
BLAST of ClCG02G008530 vs. NCBI nr
Match: gi|659074577|ref|XP_008437679.1| (PREDICTED: uncharacterized protein LOC103483019 [Cucumis melo]) HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30 Identity = 86/171 (50.29%), Postives = 104/171 (60.82%), Query Frame = 1
BLAST of ClCG02G008530 vs. NCBI nr
Match: gi|659118742|ref|XP_008459280.1| (PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo]) HSP 1 Score: 140.6 bits (353), Expect = 4.5e-30 Identity = 83/199 (41.71%), Postives = 120/199 (60.30%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |