ClCG02G008530.1 (mRNA) Watermelon (Charleston Gray)

Overview
NameClCG02G008530.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionTy3-gypsy retrotransposon protein
LocationCG_Chr02 : 11113870 .. 11115416 (-)
Sequence length903
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCCAAAGATAATTGTTCTAAAACTTCAAGTGACACTTACAGAAGACTAACTACTCATAGCGGCTCCAAGGAAATGCAACAATTTAATGAGCAACCAACCTTTGAGATCACAAGGAACATATGGGAGTGGCTCTCGAGGGACCCAAAAGTTGGGGTCGGCATCAGAGAAAATCTTGCACTTGAGAAGCACATCTCAACTTCTGAACAATCAAGCAAGGAGGCATCACACCCAAATATAATGTCAGTCATGATGGCCAATGTGGGAACTAGTGAAGAAAGGATGGTTGAGCTCGAAAGGAAAGTTAGCATGTTGTTAAAGGCAGTTGAAGAAAGGGATTATGAAATTGCATCTCTCAAGAATCATATTGAGAGTCGTGTTGAATCAAGCCATACACTCGCAGTCAAGAACAATAGGGAAGAATGTTTTACAAGAAAGTCAACCACAAGATTCAACTTCAATTGCTTCGTTGTTTGTTCAACAATTGCAGGAGATGATTGCAAACTCCATCAAGGCTTAATATGGTAGACCTAGTCAAACTTCCCTCTTGTATTCCAAACCATATACAAAAAGGATTGACAACCTAAGGATGCCAAATGGGTACCAACCACTCAAGTTCCAACAGTTTGATGGGAAGGGCAACCCAAAGCAACATGTTGCTCAGGTCATTGAAACATGTAAAAATGCAGGAACCAGAGGAGATTTGCTAGTCAAACGGTTCGTTCGAACTCTGAAGGAAAATGCCTTCGACTGGTACACCGAACTTGAAACTATTAATAGTTGGAGGTAGCTTGAATGAGAATTCATCAATTGTTTCTACAGTACTAGGCGTATCGTTAGTATGATAGAGCTTGATAAGCACTTTAAAAGGTAACTCTCGTACGTGGGAGTTGCGCTTTATGTAGTTTAATCCCACGTCTCTTGATTGCTCTCTTAATAAAGACCTGCAAAAGAAACAGAGAAAGGAAGGTTTTTTTCTTGATAAAAATTTTCTTTAGTTTCCTCCCTTTATCAAGGATCCACAATCCTTTATTTCATCACATAGAGAATAGGAGAGGCTCATGCTGGTGGTGTTTAGAGTCAACAACGAATGTAATCTTCTATCTCTAAAGCATACTTAACCCTGAATGATGTTCTGTAATTTTTTCCCAATGTATTGGTATTTTAAAATCCCAATTTATTTCGAATTTGGTTCTGTATTGCTTCTGCTGTGTTAGGGATTTCAACCCTTTCACATCAAGCATAGGATCATGAGCCCGCACAACCATTTCATTGGAACGAGTCATGCTCCTTTACAACATTAGGAAAATCGCCCCTATTAACTTAGGAGGGATTATAAGGTAAGGAATGGTGGAGTGTGCCCTAGGATGAGAGGGCGCTTGTTCTTTTCTTCCCTCATATGCAAGTTGTGTGCTCGAGTAGATGTGGTGGTGGATGCAACAGAGGAATGTTGCAAAGTCAAGCCAGCAATTGATTTAGGCTTGATCAAGAGGCTTCAAGGAAGTATGGCCACTAGGAAGGGCAAGACCTTGATAAGCACTTGA

mRNA sequence

ATGACATCCAAAGATAATTGTTCTAAAACTTCAAGTGACACTTACAGAAGACTAACTACTCATAGCGGCTCCAAGGAAATGCAACAATTTAATGAGCAACCAACCTTTGAGATCACAAGGAACATATGGGAGTGGCTCTCGAGGGACCCAAAAGTTGGGGTCGGCATCAGAGAAAATCTTGCACTTGAGAAGCACATCTCAACTTCTGAACAATCAAGCAAGGAGGCATCACACCCAAATATAATGTCAGTCATGATGGCCAATGTGGGAACTAGTGAAGAAAGGATGGTTGAGCTCGAAAGGAAAGTTAGCATGTTGTTAAAGGCAGTTGAAGAAAGGGATTATGAAATTGCATCTCTCAAGAATCATATTGAGAGTCGTGTTGAATCAAGCCATACACTCGCAGTCAAGAACAATAGGGAAGAATGTTTTACAAGAAAGTCAACCACAAGATTCAACTTCAATTGCTTCGTTGTTTGTTCAACAATTGCAGGAGATGATTGCAAACTCCATCAAGGCTTAATATGGATGCCAAATGGGTACCAACCACTCAAGTTCCAACAGTTTGATGGGAAGGGCAACCCAAAGCAACATGTTGCTCAGGTCATTGAAACATGTAAAAATGCAGGAACCAGAGGAGATTTGCTAGTCAAACGGTTCGTTCGAACTCTGAAGGAAAATGCCTTCGACTGGTACACCGAACTTGAAACTATTAATAGTTGGAGGATGAGAGGGCGCTTGTTCTTTTCTTCCCTCATATGCAAGTTGTGTGCTCGAGTAGATGTGGTGGTGGATGCAACAGAGGAATGTTGCAAAGTCAAGCCAGCAATTGATTTAGGCTTGATCAAGAGGCTTCAAGGAAGTATGGCCACTAGGAAGGGCAAGACCTTGATAAGCACTTGA

Coding sequence (CDS)

ATGACATCCAAAGATAATTGTTCTAAAACTTCAAGTGACACTTACAGAAGACTAACTACTCATAGCGGCTCCAAGGAAATGCAACAATTTAATGAGCAACCAACCTTTGAGATCACAAGGAACATATGGGAGTGGCTCTCGAGGGACCCAAAAGTTGGGGTCGGCATCAGAGAAAATCTTGCACTTGAGAAGCACATCTCAACTTCTGAACAATCAAGCAAGGAGGCATCACACCCAAATATAATGTCAGTCATGATGGCCAATGTGGGAACTAGTGAAGAAAGGATGGTTGAGCTCGAAAGGAAAGTTAGCATGTTGTTAAAGGCAGTTGAAGAAAGGGATTATGAAATTGCATCTCTCAAGAATCATATTGAGAGTCGTGTTGAATCAAGCCATACACTCGCAGTCAAGAACAATAGGGAAGAATGTTTTACAAGAAAGTCAACCACAAGATTCAACTTCAATTGCTTCGTTGTTTGTTCAACAATTGCAGGAGATGATTGCAAACTCCATCAAGGCTTAATATGGATGCCAAATGGGTACCAACCACTCAAGTTCCAACAGTTTGATGGGAAGGGCAACCCAAAGCAACATGTTGCTCAGGTCATTGAAACATGTAAAAATGCAGGAACCAGAGGAGATTTGCTAGTCAAACGGTTCGTTCGAACTCTGAAGGAAAATGCCTTCGACTGGTACACCGAACTTGAAACTATTAATAGTTGGAGGATGAGAGGGCGCTTGTTCTTTTCTTCCCTCATATGCAAGTTGTGTGCTCGAGTAGATGTGGTGGTGGATGCAACAGAGGAATGTTGCAAAGTCAAGCCAGCAATTGATTTAGGCTTGATCAAGAGGCTTCAAGGAAGTATGGCCACTAGGAAGGGCAAGACCTTGATAAGCACTTGA

Protein sequence

MTSKDNCSKTSSDTYRRLTTHSGSKEMQQFNEQPTFEITRNIWEWLSRDPKVGVGIRENLALEKHISTSEQSSKEASHPNIMSVMMANVGTSEERMVELERKVSMLLKAVEERDYEIASLKNHIESRVESSHTLAVKNNREECFTRKSTTRFNFNCFVVCSTIAGDDCKLHQGLIWMPNGYQPLKFQQFDGKGNPKQHVAQVIETCKNAGTRGDLLVKRFVRTLKENAFDWYTELETINSWRMRGRLFFSSLICKLCARVDVVVDATEECCKVKPAIDLGLIKRLQGSMATRKGKTLIST
Homology
[Close]
BLAST of ClCG02G008530.1 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.9e-36
Identity = 105/263 (39.92%), Postives = 150/263 (57.03%), Query Frame = 1 

Query: 8   SKTSSDTYRRLTTHSGSKE-MQQFNEQPTFEITRNIWEWLSRDPKVGVGIRENLALEKHI 67
           S  +SD+Y  L T S  K  MQ+  ++  F + +   E L   PK G+ IR+N       
Sbjct: 10  SSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNST 69

Query: 68  STSEQSSKEASHPNIMSVMMANVGTSEERMVELERKVSMLLKAVEERDYEIASLKNHIES 127
             S  S K ASH  ++SVMM +V T+E  + E+ERK++ L+K +EERD+EIA+LK+ +++
Sbjct: 70  PASNLSDK-ASHLEVVSVMMVDV-TAEATVTEMERKINFLMKVIEERDHEIAALKDQMKA 129

Query: 128 --RVESSHTLAVKNN-------REECFTRKSTTRFNFNCFVVCSTIAGDDCKLHQG---- 187
               ESS T  VK         +E    ++S +  + +   +   IA      + G    
Sbjct: 130 CETGESSQTPVVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIANSIRAQYGGPPQT 189

Query: 188 -------------LIWMPNGYQPLKFQQFDGKGNPKQHVAQVIETCKNAGTRGDLLVKRF 242
                         + MP GYQP KFQQFDG+GNPKQH+A  +ETC+NAG+RGD LVK+F
Sbjct: 190 SFMYSKSYTKRIDNLRMPLGYQPPKFQQFDGRGNPKQHIAHFVETCENAGSRGDQLVKQF 249

[Close]
BLAST of ClCG02G008530.1 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.6e-35
Identity = 97/232 (41.81%), Postives = 137/232 (59.05%), Query Frame = 1 

Query: 32  EQPTFEITRNIWEWLSRDPKVGVGIRENLALEKHISTSEQSSKEASHPNIMSVMMANVGT 91
           ++  F + +   E L    K G+ IR+N        TS  S KE SH  ++SVMM +V T
Sbjct: 4   QEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKE-SHLEVVSVMMIDV-T 63

Query: 92  SEERMVELERKVSMLLKAVEERDYEIASLKNHIES--RVESSHTLAVK--NNREECFTRK 151
           +E  M E+E+K++ L+K VEERD+EIA+LK+ +++    ESS T  VK  +  +  +   
Sbjct: 64  AEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKNVYGGP 123

Query: 152 STTRFNFNCFVVCSTIAGDDCKLHQGLIWMPNGYQPLKFQQFDGKGNPKQHVAQVIETCK 211
             T F ++      T   D+ +       MP GYQP KFQQFDGKGNPKQH+A  +ETC+
Sbjct: 124 PQTSFMYS---KPYTKRIDNLR-------MPLGYQPPKFQQFDGKGNPKQHIAHFVETCE 183

Query: 212 NAGTRGDLLVKRFVRTLKENAFDWYTEL--ETINSWRMRGRLFFSSLICKLC 258
           NAG+RGD LV++FVR+LK NAF+WYT+L  E  +SW    + F +      C
Sbjct: 184 NAGSRGDQLVRQFVRSLKGNAFEWYTDLEPEVTDSWEQLEKEFLNRFYSTKC 223

[Close]
BLAST of ClCG02G008530.1 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.6e-32
Identity = 76/134 (56.72%), Postives = 100/134 (74.63%), Query Frame = 1 

Query: 1   MTSKDNCSKTSSDTYRRLTTHSGSKEMQQFNEQPTFEITRNIWEWLSRDPKVGVGIRENL 60
           MTS+ N SK  SD  +R  T S S+E+Q   +   FE+ +NIWE +S+ PK G+ I+EN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  ALEKHISTSEQSSKEASHPNIMSVMMANVGTSEERMVELERKVSMLLKAVEERDYEIASL 120
           A++KH S SE S++EA  PNIMSVM+ +V TSE RMVELE+KV+ML+KAVEERD++IASL
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKKVNMLMKAVEERDFKIASL 120

Query: 121 KNHIESRVESSHTL 135
           KNHIESR  +  T+
Sbjct: 121 KNHIESRDTAESTV 134

[Close]
BLAST of ClCG02G008530.1 vs. TrEMBL
Match: A5C4T7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020798 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.0e-24
Identity = 72/175 (41.14%), Postives = 98/175 (56.00%), Query Frame = 1 

Query: 82  MSVMMANVGTSEERMVELERKVSMLLKAVEERDYEIASLKNHIESRVESSHTLAVK---- 141
           MSVM     + EE++ E+ R ++ L K VEE+D +IASL N +E++   ++T+  +    
Sbjct: 98  MSVMTTGTTSIEEQLAEIARAIAKLTKTVEEKDMQIASLINKVETQDMITNTIKAQYGGP 157

Query: 142 NNREECFTRKSTTRFNFNCFVVCSTIAGDDCKLHQGLIWMPNGYQPLKFQQFDGKGNPKQ 201
           +     +++  T R +                LH     MP GYQP KFQ FDGK NPKQ
Sbjct: 158 SQSTLMYSKPYTKRID---------------NLH-----MPMGYQPPKFQSFDGKDNPKQ 217

Query: 202 HVAQVIETCKNAGTRGDLLVKRFVRTLKENAFDWYTEL--ETINSWRMRGRLFFS 251
           HVA  +ETC NAGT  DLLV +FV +L+ NAFDWY +L  E I SW    R F +
Sbjct: 218 HVAHFVETCNNAGTDSDLLVNQFVCSLRGNAFDWYIDLAPECIESWDQMEREFLN 252

[Close]
BLAST of ClCG02G008530.1 vs. TrEMBL
Match: M5Y2U9_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb024107mg PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.0e-20
Identity = 73/204 (35.78%), Postives = 100/204 (49.02%), Query Frame = 1 

Query: 77  SHPNIMSVMMANVGTSEERMVELERKVSMLLKAVEERDYEIASLKNHI------------ 136
           S+   M VM+    + EE++  +   V+ L K VEE+D +IASL N+             
Sbjct: 180 SYSMAMQVMVTGAMSIEEQLAHMSEAVTKLTKMVEEKDAQIASLINNKWEAHQDKEPGPD 239

Query: 137 ------ESRVESSH------TLAVKNNREECFTRK----STTRFNFNCFVVCSTIAGDDC 196
                    VESS       T + + + E+         +T R  +      + +     
Sbjct: 240 AHKKGPHHEVESSEKGLGHETESGEKSHEKVDAASDMIANTIRVQYGAPSRDTLMYSKPY 299

Query: 197 KLHQGLIWMPNGYQPLKFQQFDGKGNPKQHVAQVIETCKNAGTRGDLLVKRFVRTLKENA 251
                 + MP GYQP KFQQF+ KGNPKQHVA  +ETC NAG  GD LVK+FVR+ K N 
Sbjct: 300 TRRIDNLRMPTGYQPPKFQQFNAKGNPKQHVAHFVETCNNAGIEGDHLVKQFVRSWKGNL 359

[Close]
BLAST of ClCG02G008530.1 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 160.6 bits (405), Expect = 4.2e-36
Identity = 105/263 (39.92%), Postives = 150/263 (57.03%), Query Frame = 1 

Query: 8   SKTSSDTYRRLTTHSGSKE-MQQFNEQPTFEITRNIWEWLSRDPKVGVGIRENLALEKHI 67
           S  +SD+Y  L T S  K  MQ+  ++  F + +   E L   PK G+ IR+N       
Sbjct: 10  SSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNST 69

Query: 68  STSEQSSKEASHPNIMSVMMANVGTSEERMVELERKVSMLLKAVEERDYEIASLKNHIES 127
             S  S K ASH  ++SVMM +V T+E  + E+ERK++ L+K +EERD+EIA+LK+ +++
Sbjct: 70  PASNLSDK-ASHLEVVSVMMVDV-TAEATVTEMERKINFLMKVIEERDHEIAALKDQMKA 129

Query: 128 --RVESSHTLAVKNN-------REECFTRKSTTRFNFNCFVVCSTIAGDDCKLHQG---- 187
               ESS T  VK         +E    ++S +  + +   +   IA      + G    
Sbjct: 130 CETGESSQTPVVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIANSIRAQYGGPPQT 189

Query: 188 -------------LIWMPNGYQPLKFQQFDGKGNPKQHVAQVIETCKNAGTRGDLLVKRF 242
                         + MP GYQP KFQQFDG+GNPKQH+A  +ETC+NAG+RGD LVK+F
Sbjct: 190 SFMYSKSYTKRIDNLRMPLGYQPPKFQQFDGRGNPKQHIAHFVETCENAGSRGDQLVKQF 249

[Close]
BLAST of ClCG02G008530.1 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 156.4 bits (394), Expect = 8.0e-35
Identity = 97/232 (41.81%), Postives = 137/232 (59.05%), Query Frame = 1 

Query: 32  EQPTFEITRNIWEWLSRDPKVGVGIRENLALEKHISTSEQSSKEASHPNIMSVMMANVGT 91
           ++  F + +   E L    K G+ IR+N        TS  S KE SH  ++SVMM +V T
Sbjct: 4   QEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKE-SHLEVVSVMMIDV-T 63

Query: 92  SEERMVELERKVSMLLKAVEERDYEIASLKNHIES--RVESSHTLAVK--NNREECFTRK 151
           +E  M E+E+K++ L+K VEERD+EIA+LK+ +++    ESS T  VK  +  +  +   
Sbjct: 64  AEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKNVYGGP 123

Query: 152 STTRFNFNCFVVCSTIAGDDCKLHQGLIWMPNGYQPLKFQQFDGKGNPKQHVAQVIETCK 211
             T F ++      T   D+ +       MP GYQP KFQQFDGKGNPKQH+A  +ETC+
Sbjct: 124 PQTSFMYS---KPYTKRIDNLR-------MPLGYQPPKFQQFDGKGNPKQHIAHFVETCE 183

Query: 212 NAGTRGDLLVKRFVRTLKENAFDWYTEL--ETINSWRMRGRLFFSSLICKLC 258
           NAG+RGD LV++FVR+LK NAF+WYT+L  E  +SW    + F +      C
Sbjct: 184 NAGSRGDQLVRQFVRSLKGNAFEWYTDLEPEVTDSWEQLEKEFLNRFYSTKC 223

[Close]
BLAST of ClCG02G008530.1 vs. NCBI nr
Match: gi|307135887|gb|ADN33752.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 147.5 bits (371), Expect = 3.7e-32
Identity = 76/134 (56.72%), Postives = 100/134 (74.63%), Query Frame = 1 

Query: 1   MTSKDNCSKTSSDTYRRLTTHSGSKEMQQFNEQPTFEITRNIWEWLSRDPKVGVGIRENL 60
           MTS+ N SK  SD  +R  T S S+E+Q   +   FE+ +NIWE +S+ PK G+ I+EN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  ALEKHISTSEQSSKEASHPNIMSVMMANVGTSEERMVELERKVSMLLKAVEERDYEIASL 120
           A++KH S SE S++EA  PNIMSVM+ +V TSE RMVELE+KV+ML+KAVEERD++IASL
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKKVNMLMKAVEERDFKIASL 120

Query: 121 KNHIESRVESSHTL 135
           KNHIESR  +  T+
Sbjct: 121 KNHIESRDTAESTV 134

[Close]
BLAST of ClCG02G008530.1 vs. NCBI nr
Match: gi|659074577|ref|XP_008437679.1| (PREDICTED: uncharacterized protein LOC103483019 [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 86/171 (50.29%), Postives = 104/171 (60.82%), Query Frame = 1 

Query: 107 LKAVEERDYEIASLKNHIESR--VESSHTLAVKNNR------EECFTRKSTTRFNFNCFV 166
           +KAVEERD+EIA LKNHIESR   ESSHT  +KN        +E   + ST+  + +   
Sbjct: 1   MKAVEERDFEIALLKNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQQ 60

Query: 167 VCSTIAGDDCKLHQGLIW-----------------MPNGYQPLKFQQFDGKGNPKQHVAQ 226
           +   IA      + G +                  MP+ YQP KFQQFDGKGNPKQHVA 
Sbjct: 61  LQEMIANSIKTQYGGPVQTFSLYSKPYTKRIDNMRMPHEYQPPKFQQFDGKGNPKQHVAH 120

Query: 227 VIETCKNAGTRGDLLVKRFVRTLKENAFDWYTEL--ETINSWRMRGRLFFS 251
            IETC+ AGTRGDLLVK+FVRTLK NAFDWYT+L  E+I+SW    R F +
Sbjct: 121 FIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLN 171

[Close]
BLAST of ClCG02G008530.1 vs. NCBI nr
Match: gi|659118742|ref|XP_008459280.1| (PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo])

HSP 1 Score: 140.6 bits (353), Expect = 4.5e-30
Identity = 83/199 (41.71%), Postives = 120/199 (60.30%), Query Frame = 1 

Query: 40  RNIWEWLSRDPKVGVGIRENLALEKHISTSEQSSKEASHPNIMSVMMANVGTSEERMVEL 99
           ++I + L   PK G+ I+EN   +   S   +  KEA HP++MSVMM ++ T+E  M E+
Sbjct: 2   QSILKQLMLSPKAGIFIKENPLYDNFDSALSKLKKEA-HPDVMSVMMVDI-TAEAAMTEM 61

Query: 100 ERKVSMLLKAVEERDYEIASLKNH--IESRVESSHTLAVKNNREECFTRKSTTRFNFNCF 159
           ERK+++++K V+E+D++I +L+    I    +SS T  +++         S+ R  +   
Sbjct: 62  ERKINLVMKVVKEQDHKITALREQMQIHETTKSSQTPQLQD------MITSSIRAQYGGP 121

Query: 160 VVCSTIAGDDCKLHQGLIWMPNGYQPLKFQQFDGKGNPKQHVAQVIETCKNAGTRGDLLV 219
              S +           + MP GYQPLKFQQFD KGN  QHVA  +ETCKN G+RGD LV
Sbjct: 122 PQTSFMYSKPYTKRINDLRMPVGYQPLKFQQFDRKGNLNQHVAHFVETCKNTGSRGDQLV 181

Query: 220 KRFVRTLKENAFDWYTELE 237
           K+FVR+LK NAF WY +LE
Sbjct: 182 KQFVRSLKGNAFKWYIDLE 192

The following BLAST results are available for this feature:
BLAST of ClCG02G008530.1 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCP6_CUCME2.9e-3639.92Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GB67_CUCME5.6e-3541.81Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GBB0_CUCME2.6e-3256.72Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5C4T7_VITVI2.0e-2441.14Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020798 PE=4 SV=1[more]
M5Y2U9_PRUPE3.0e-2035.78Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb024107mg PE=4 S... [more]
BLAST of ClCG02G008530.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136441|gb|ADN34247.1|4.2e-3639.92ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307135838|gb|ADN33709.1|8.0e-3541.81retrotransposon gag protein [Cucumis melo subsp. melo][more]
gi|307135887|gb|ADN33752.1|3.7e-3256.72ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659074577|ref|XP_008437679.1|2.0e-3050.29PREDICTED: uncharacterized protein LOC103483019 [Cucumis melo][more]
gi|659118742|ref|XP_008459280.1|4.5e-3041.71PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG02G008530ClCG02G008530gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG02G008530.1ClCG02G008530.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG02G008530.1.cds3ClCG02G008530.1.cds3CDS
ClCG02G008530.1.cds2ClCG02G008530.1.cds2CDS
ClCG02G008530.1.cds1ClCG02G008530.1.cds1CDS