Csa7G394630 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G394630
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Putative uncharacterized protein T20O10_20
Location	Chr7 : 15031225 .. 15032904 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGCGGTGGCACATTGCAAAGAATCTGAGATATGGCAATTTCATTTTCTCGACTCGGAAGTTCCATTCCCTTCTCCGGCCTGTTCAGGTAATTCTCTCCAATCTAGTTTCTACAGCTTCCTACTATCGTTACTTGCTGGAATTCCATTGGAGAGTAAACAAATCTCAGTGTTTACAACAGTTTTATGTCTATGTGTTTTGTAATTTTGATTTTGGTAGCTTTTTTACCCCCCCGTCTAAACCAAAACTCACCAAGCAAAGATGAAAGAGCCAAGACATCTACTGTTTCCTTATAAGTCAACAGGTAGAGACTTCACCTGGGAGAGGATACCCCCCCCTAGTGTTGATGGCTTTGTTGTAAGTTCTTTTGACCGATATGAGCTAAATTCTTGATTGAAAATTCGTTGATTCATCGCTGCATTAAAATGTGTGTGTGCGTGTGTCTCTAATTTACTTTTTATCAAATATTGGATGTGTTTTTGTTTATTCCCTCAATTGAGCTGAGGGATTAGAACATTTTGATTACTGGATTTACTCAACGTTTACTTGATATGTTCCTGGTTAATCGAATAAGCTGCGAGGGGTGTCTATCTTGTGGGAGAACCTTGTCTTCCAAGCTCTGAAGTGAGAGAAAATTGTGAGAGGGTGGGGAATTGTAACTGCTTTAAAGAAGTAGCCTATTGGAAATTATTAGTTTCTTAACCTGCATATATTTTAACTTTTAAGATGCTAATGGGGTCTTTTTAGAATTGTTCTGAATGTTTCTTAGTATACAATTGGGGGTGGGAGATTCAAACCTTTGATCTCATGGTCTAGAGTGCATTTCTTATGCCAATTGAATTTGGCTTATGTTGGTAGAATTGTTTGAATATTGATGCGAGTGTGAAGTAATTTCCAACTCTTTCAGTAGAAAAGTGCACATTAACCTCAATTTTACCACTTACCTAATTGTTTCTAAGAATAGTTTTAAAAACACAAGCATTTTATTGTTGTTTTAGAACAACTCATAATGTTTTCCCTTCTTCATATAGACAACTGGAGCAAGAGATGGAAACTGTCATAAGGGTTTTGCAGCCTGGACCTCTGGGAATTATTGAACACAAGTTTTCTGCTGAGGAGATGCGCCGGGCACAATCCACTGTTCGGGAAGCAGTTAATAATTGGCGACGGAATACAATTATTGAGAAACAAAGCAGTATTTCAAGTAACCATAGCTAGGAGAGAAATTGTTTCTATAGTGATCTTCAAAAACATCTTGTATAATTTCTTTATTAGATTCTCAATAAAATTAGATCAAACGGTGACATTCACTAAAAAGTAAGAAATTGTTAATACTATTGAGCCTTCAGGTTATTATAATTTTTTTTGAAGGAAGTTTTTTGGGCCATCCAAACTAGGTTGAAAGAAGCGTGTAGCAGCTACGGACATGTGGATCTTTTCCTTTGTAAATTCTGTTAGTAACACATTGTAACGAAAGGACACATCTGAAGAGAGTGATGAAGACTGTGATGTAAGGGAGGGAAGTAGTTAGTCATATAGCAGGGAAGAACTTGAGACTTCGAACTTCATTTGGAGTGCACTTGAATGTATGGTGGTTTTTTTTAATTCTTCTTTGTAAATTCAGACCTCCCATCAAATTCACTTCTCTAAATCTATAAGAATCTATAATGGCTAGCACAC

mRNA sequence

ATGGCAATTTCATTTTCTCGACTCGGAAGTTCCATTCCCTTCTCCGGCCTGTTCAGACAACTGGAGCAAGAGATGGAAACTGTCATAAGGGTTTTGCAGCCTGGACCTCTGGGAATTATTGAACACAAGTTTTCTGCTGAGGAGATGCGCCGGGCACAATCCACTGTTCGGGAAGCAGTTAATAATTGGCGACGGAATACAATTATTGAGAAACAAAGCAGTATTTCAAGTAACCATAGCTAG

Coding sequence (CDS)

ATGGCAATTTCATTTTCTCGACTCGGAAGTTCCATTCCCTTCTCCGGCCTGTTCAGACAACTGGAGCAAGAGATGGAAACTGTCATAAGGGTTTTGCAGCCTGGACCTCTGGGAATTATTGAACACAAGTTTTCTGCTGAGGAGATGCGCCGGGCACAATCCACTGTTCGGGAAGCAGTTAATAATTGGCGACGGAATACAATTATTGAGAAACAAAGCAGTATTTCAAGTAACCATAGCTAG

Protein sequence

MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAVNNWRRNTIIEKQSSISSNHS*

Homology

[Close]

BLAST of Csa7G394630 vs. TrEMBL
Match: A0A0A0K7N1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394630 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 6.7e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1


Query: 1  MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60
          MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV
Sbjct: 1  MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60

Query: 61 NNWRRNTIIEKQSSISSNHS 81
          NNWRRNTIIEKQSSISSNHS
Sbjct: 61 NNWRRNTIIEKQSSISSNHS 80

[Close]

BLAST of Csa7G394630 vs. TrEMBL
Match: D7TP33_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g01430 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.0e-23
Identity = 54/79 (68.35%), Postives = 66/79 (83.54%), Query Frame = 1


Query: 1  MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60
          M +SFSRLG S+PFSGLFRQLEQE+ETV++VLQPGPLGIIEHKFS EE+R A++TV  AV
Sbjct: 1  MPVSFSRLGKSLPFSGLFRQLEQEIETVVKVLQPGPLGIIEHKFSTEEIREAEATVNRAV 60

Query: 61 NNWRRNTIIEKQSSISSNH 80
           NWRRN  +E+ S I  ++
Sbjct: 61 ANWRRNANLEQGSDILKSY 79

[Close]

BLAST of Csa7G394630 vs. TrEMBL
Match: A0A0B0PSB0_GOSAR (Zinc metalloproteinase aureolysin OS=Gossypium arboreum GN=F383_10950 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-21
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 1  MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60
          M  S S+LG+ +P   LFRQLEQEMETVI+VLQPGPLGIIEHKFSAEE+R A +TVR+AV
Sbjct: 1  MRASLSQLGNILPIPKLFRQLEQEMETVIKVLQPGPLGIIEHKFSAEEIREANATVRKAV 60

Query: 61 NNWRRNTIIEKQSSISSNH 80
           NWRRN IIE ++ I  ++
Sbjct: 61 ENWRRNAIIEHRNGILKDY 79

[Close]

BLAST of Csa7G394630 vs. TrEMBL
Match: A0A067K765_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13871 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-21
Identity = 51/75 (68.00%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 1   MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60
           M ISFS LG+++PFS +FRQLEQEMETV++VLQPGPLGI+EHKFS EE+R A +TV  AV
Sbjct: 464 MRISFSGLGNALPFSRIFRQLEQEMETVVKVLQPGPLGIVEHKFSVEEIREANATVSRAV 523

Query: 61  NNWRRNTIIEKQSSI 76
            NWRRN  +E++S I
Sbjct: 524 ANWRRNAKLEQRSDI 538

[Close]

BLAST of Csa7G394630 vs. TrEMBL
Match: A0A0D2SSP1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G009300 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-21
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 1  MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60
          M  S S+LG+ +P   LFRQLEQEMETVI+VLQPGPLGIIEHKFSAEE+R A +TVR+AV
Sbjct: 1  MRASLSQLGNILPIPTLFRQLEQEMETVIKVLQPGPLGIIEHKFSAEEIREANATVRKAV 60

Query: 61 NNWRRNTIIEKQSSISSNH 80
           NWRRN IIE ++ I  ++
Sbjct: 61 ENWRRNAIIEHRNGILKDY 79

[Close]

BLAST of Csa7G394630 vs. TAIR10
Match: AT3G62920.1 (AT3G62920.1 unknown protein)

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-19
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 3  ISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAVNN 62
          +S  R+  ++PFSG+ RQLE+E ETVI VLQPGPLGIIEHKFSA+E+R A++TV  AV++
Sbjct: 1  MSIYRIARALPFSGILRQLEKEAETVINVLQPGPLGIIEHKFSAQEIREAKATVSRAVDS 60

Query: 63 WRRNTIIEKQSSISSNH 80
          WRR++ +E  + +  ++
Sbjct: 61 WRRHSEVEHANGLLKDY 77

[Close]

BLAST of Csa7G394630 vs. NCBI nr
Match: gi|778727909|ref|XP_011659338.1| (PREDICTED: uncharacterized protein LOC101214859 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 9.7e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1


Query: 1  MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60
          MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV
Sbjct: 1  MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60

Query: 61 NNWRRNTIIEKQSSISSNHS 81
          NNWRRNTIIEKQSSISSNHS
Sbjct: 61 NNWRRNTIIEKQSSISSNHS 80

[Close]

BLAST of Csa7G394630 vs. NCBI nr
Match: gi|659101479|ref|XP_008451625.1| (PREDICTED: uncharacterized protein LOC103492858 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-34
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 1


Query: 1  MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60
          MAISFSRLG+SIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV
Sbjct: 1  MAISFSRLGNSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60

Query: 61 NNWRRNTIIEKQSSISSNHS 81
          NNWRRNT+IEKQS ISSNHS
Sbjct: 61 NNWRRNTLIEKQSCISSNHS 80

[Close]

BLAST of Csa7G394630 vs. NCBI nr
Match: gi|225436767|ref|XP_002267360.1| (PREDICTED: uncharacterized protein LOC100240880 [Vitis vinifera])

HSP 1 Score: 114.8 bits (286), Expect = 7.2e-23
Identity = 54/79 (68.35%), Postives = 66/79 (83.54%), Query Frame = 1


Query: 1  MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60
          M +SFSRLG S+PFSGLFRQLEQE+ETV++VLQPGPLGIIEHKFS EE+R A++TV  AV
Sbjct: 1  MPVSFSRLGKSLPFSGLFRQLEQEIETVVKVLQPGPLGIIEHKFSTEEIREAEATVNRAV 60

Query: 61 NNWRRNTIIEKQSSISSNH 80
           NWRRN  +E+ S I  ++
Sbjct: 61 ANWRRNANLEQGSDILKSY 79

[Close]

BLAST of Csa7G394630 vs. NCBI nr
Match: gi|720085550|ref|XP_010243551.1| (PREDICTED: uncharacterized protein LOC104587583 [Nelumbo nucifera])

HSP 1 Score: 111.3 bits (277), Expect = 7.9e-22
Identity = 52/77 (67.53%), Postives = 68/77 (88.31%), Query Frame = 1


Query: 3  ISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAVNN 62
          +SF+R+G+S+PFS LFRQLEQ+METV++VLQPGPLGIIEHKFSAEE+  A++TV  AV+N
Sbjct: 1  MSFARIGNSLPFSRLFRQLEQDMETVVKVLQPGPLGIIEHKFSAEEVYNAKATVDGAVDN 60

Query: 63 WRRNTIIEKQSSISSNH 80
          WRRN I+EK+S I  ++
Sbjct: 61 WRRNAILEKRSHILEDY 77

[Close]

BLAST of Csa7G394630 vs. NCBI nr
Match: gi|643716474|gb|KDP28100.1| (hypothetical protein JCGZ_13871 [Jatropha curcas])

HSP 1 Score: 108.6 bits (270), Expect = 5.1e-21
Identity = 51/75 (68.00%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 1   MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60
           M ISFS LG+++PFS +FRQLEQEMETV++VLQPGPLGI+EHKFS EE+R A +TV  AV
Sbjct: 464 MRISFSGLGNALPFSRIFRQLEQEMETVVKVLQPGPLGIVEHKFSVEEIREANATVSRAV 523

Query: 61  NNWRRNTIIEKQSSI 76
            NWRRN  +E++S I
Sbjct: 524 ANWRRNAKLEQRSDI 538

The following BLAST results are available for this feature:

BLAST of Csa7G394630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7N1_CUCSA	6.7e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394630 PE=4 SV=1	[more]
D7TP33_VITVI	5.0e-23	68.35	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g01430 PE=4 SV=...	[more]
A0A0B0PSB0_GOSAR	3.6e-21	67.09	Zinc metalloproteinase aureolysin OS=Gossypium arboreum GN=F383_10950 PE=4 SV=1	[more]
A0A067K765_JATCU	3.6e-21	68.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13871 PE=4 SV=1	[more]
A0A0D2SSP1_GOSRA	3.6e-21	67.09	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G009300 PE=4 SV=1	[more]

BLAST of Csa7G394630 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G62920.1	1.0e-19	54.55	unknown protein	[more]

BLAST of Csa7G394630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778727909\|ref\|XP_011659338.1\|	9.7e-36	100.00	PREDICTED: uncharacterized protein LOC101214859 [Cucumis sativus]	[more]
gi\|659101479\|ref\|XP_008451625.1\|	1.4e-34	96.25	PREDICTED: uncharacterized protein LOC103492858 [Cucumis melo]	[more]
gi\|225436767\|ref\|XP_002267360.1\|	7.2e-23	68.35	PREDICTED: uncharacterized protein LOC100240880 [Vitis vinifera]	[more]
gi\|720085550\|ref\|XP_010243551.1\|	7.9e-22	67.53	PREDICTED: uncharacterized protein LOC104587583 [Nelumbo nucifera]	[more]
gi\|643716474\|gb\|KDP28100.1\|	5.1e-21	68.00	hypothetical protein JCGZ_13871 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU102886	cucumber EST collection version 3.0	transcribed_cluster
CU121986	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G394630.1	Csa7G394630.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU121986	CU121986	transcribed_cluster
CU102886	CU102886	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37235	FAMILY NOT NAMED	coord: 1..78 score: 9.4
None	No IPR available	PANTHER	PTHR37235:SF1	SUBFAMILY NOT NAMED	coord: 1..78 score: 9.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G394630	MELO3C016052	Melon (DHL92) v3.5.1	cumeB532
Csa7G394630	ClCG09G006300	Watermelon (Charleston Gray)	cuwcgB526
Csa7G394630	Lsi02G023640	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G394630	MELO3C016052.2	Melon (DHL92) v3.6.1	cumedB511
Csa7G394630	Cla97C09G168840	Watermelon (97103) v2	cuwmbB572
Csa7G394630	BhiUN245G44	Wax gourd	cuwgoB653
Csa7G394630	CSPI07G17080	Wild cucumber (PI 183967)	cpicuB354
Csa7G394630	CmaCh17G011190	Cucurbita maxima (Rimu)	cmacuB388
Csa7G394630	CmaCh08G003970	Cucurbita maxima (Rimu)	cmacuB914
Csa7G394630	CmoCh08G003930	Cucurbita moschata (Rifu)	cmocuB900
Csa7G394630	CmoCh17G010940	Cucurbita moschata (Rifu)	cmocuB378
Csa7G394630	Cp4.1LG17g06920	Cucurbita pepo (Zucchini)	cpecuB343
Csa7G394630	Cp4.1LG12g05350	Cucurbita pepo (Zucchini)	cpecuB161
Csa7G394630	CsGy7G015520	Cucumber (Gy14) v2	cgybcuB323
Csa7G394630	Carg07197	Silver-seed gourd	carcuB0119
Csa7G394630	Carg22158	Silver-seed gourd	carcuB0876

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G394630	Watermelon (97103) v2	cuwmbB539
Csa7G394630	Wax gourd	cuwgoB654
Csa7G394630	Wax gourd	cuwgoB657
Csa7G394630	Cucumber (Gy14) v1	cgycuB519
Csa7G394630	Watermelon (97103) v1	cuwmB568
Csa7G394630	Watermelon (97103) v1	cuwmB588