Csa7G279800 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G279800
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 9893098 .. 9893765 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATTAGAATTTGCATGAGGATCTCTCGACTCTCGCTCGGTATCAAAATCTTCTTTGGGAACTCTCGACTCTCAACTGAAGCCCTAATACAATCACTCGTAGAAAATAGGAGAGCCAAGTCATTTTGAGCTAGAATGCATCAAGTTCCTTCGGTATCAAAACCTTAGTGGGGAACTCTCGATATTCAACATAAGCCACAATACAATTGCCCGTAGAAAGTAGGAGACCCAAGCCGCTTCGAGCTAGAATGTGTCAGGTTCCTTCGGTATAAGAAACTGCGTGGTAACTCTCGACTCTTGGCTGAAGCCATATTACAATTACCCGTAGAAAGAAAGAGAGCCAAGCCGTTTCAGGCCAGAATGCGTTGGGTTCTTTCGATATTAGAACTACGTGAAGAACTTCGACTCTTGACCGAAGCTACATTACTATCGCTCGTAGAAATTAGGAGAGCCAGGCCGCTTTAGGCCATAGTGCATTGGGTTTCTTTGATATTGGAAAATGCGTGGGGAACTCTCGACTTTTGGCTGAAGCCACATTACAATTGCACGTAGAAAGTAGGAGAGACGAGCCGTTTCGGGCCAGAATGAGTCAAGTTCATTTCGTGTCAGAATCTACTTTAAGAACTCTCGACTCTCAACTGAAGCCACAATACAATCACTCGTAG

mRNA sequence

ATGGATATTAGAATTTGCATGAGGATCTCTCGACTCTCGCTCGGTATCAAAATCTTCTTTGGGAACTCTCGACTCTCAACTGAAGCCCTAATACAATCACTCAAAGTAGGAGACCCAAGCCGCTTCGAGCTAGAATGTGTCAGGTTCCTTCGGTATAAGAAACTGCGTGGTAACTCTCGACTCTTGGCTGAAGCCATATTACAATTACCCGTAGAAAGAAAGAGAGCCAAGCCGTTTCAGGCCAGAATGCGTTGGGAGAGCCAGGCCGCTTTAGGCCATAGTGCATTGGGTTTCTTTGATATTGGAAAATGCGTGGGGAACTCTCGACTTTTGGCTGAAGCCACATTACAATTGCACGTAGAAAGTAGGAGAGACGAGCCGTTTCGGGCCAGAATGAGTCAAGTTCATTTCGTGTCAGAATCTACTTTAAGAACTCTCGACTCTCAACTGAAGCCACAATACAATCACTCGTAG

Coding sequence (CDS)

ATGGATATTAGAATTTGCATGAGGATCTCTCGACTCTCGCTCGGTATCAAAATCTTCTTTGGGAACTCTCGACTCTCAACTGAAGCCCTAATACAATCACTCAAAGTAGGAGACCCAAGCCGCTTCGAGCTAGAATGTGTCAGGTTCCTTCGGTATAAGAAACTGCGTGGTAACTCTCGACTCTTGGCTGAAGCCATATTACAATTACCCGTAGAAAGAAAGAGAGCCAAGCCGTTTCAGGCCAGAATGCGTTGGGAGAGCCAGGCCGCTTTAGGCCATAGTGCATTGGGTTTCTTTGATATTGGAAAATGCGTGGGGAACTCTCGACTTTTGGCTGAAGCCACATTACAATTGCACGTAGAAAGTAGGAGAGACGAGCCGTTTCGGGCCAGAATGAGTCAAGTTCATTTCGTGTCAGAATCTACTTTAAGAACTCTCGACTCTCAACTGAAGCCACAATACAATCACTCGTAG

Protein sequence

MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSRLLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHVESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS*

Homology

[Close]

BLAST of Csa7G279800 vs. TrEMBL
Match: A0A0A0K4I4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279800 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.1e-81
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1


Query: 1   MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR 60
           MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR
Sbjct: 1   MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR 60

Query: 61  LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV 120
           LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV
Sbjct: 61  LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV 120

Query: 121 ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 158
           ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS
Sbjct: 121 ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 157

[Close]

BLAST of Csa7G279800 vs. TrEMBL
Match: A0A0A0K4H8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279750 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-10
Identity = 48/101 (47.52%), Postives = 57/101 (56.44%), Query Frame = 1


Query: 57  GNSRLLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATL 116
           G S +     LQ PVE    K  QARMR      +  +A   FDI K V N+RLL EATL
Sbjct: 19  GRSHITIAPTLQSPVESSIIKTLQARMR-----QVPSNASSSFDIRKYVENTRLLVEATL 78

Query: 117 QLHVESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 158
           Q  VE RR +P RARM +V  + +    TLDS+LK QYN S
Sbjct: 79  QSPVERRRAKPIRARMHRVPSILKLVWSTLDSRLKLQYNCS 114

[Close]

BLAST of Csa7G279800 vs. TrEMBL
Match: A0A0A0K4H8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279750 PE=4 SV=1)

HSP 1 Score: 41.2 bits (95), Expect = 1.4e+00
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 1


Query: 53 KKLRGNSRLLAEAILQLPVERKRAKPFQARM 84
          +K   N+RLL EA LQ PVER+RAKP +ARM
Sbjct: 59 RKYVENTRLLVEATLQSPVERRRAKPIRARM 89

[Close]

BLAST of Csa7G279800 vs. NCBI nr
Match: gi|700189165|gb|KGN44398.1| (hypothetical protein Csa_7G279800 [Cucumis sativus])

HSP 1 Score: 309.7 bits (792), Expect = 3.0e-81
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1


Query: 1   MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR 60
           MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR
Sbjct: 1   MDIRICMRISRLSLGIKIFFGNSRLSTEALIQSLKVGDPSRFELECVRFLRYKKLRGNSR 60

Query: 61  LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV 120
           LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV
Sbjct: 61  LLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATLQLHV 120

Query: 121 ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 158
           ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS
Sbjct: 121 ESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 157

[Close]

BLAST of Csa7G279800 vs. NCBI nr
Match: gi|700189160|gb|KGN44393.1| (hypothetical protein Csa_7G279750 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 4.7e-10
Identity = 48/101 (47.52%), Postives = 57/101 (56.44%), Query Frame = 1


Query: 57  GNSRLLAEAILQLPVERKRAKPFQARMRWESQAALGHSALGFFDIGKCVGNSRLLAEATL 116
           G S +     LQ PVE    K  QARMR      +  +A   FDI K V N+RLL EATL
Sbjct: 19  GRSHITIAPTLQSPVESSIIKTLQARMR-----QVPSNASSSFDIRKYVENTRLLVEATL 78

Query: 117 QLHVESRRDEPFRARMSQVHFVSESTLRTLDSQLKPQYNHS 158
           Q  VE RR +P RARM +V  + +    TLDS+LK QYN S
Sbjct: 79  QSPVERRRAKPIRARMHRVPSILKLVWSTLDSRLKLQYNCS 114

[Close]

BLAST of Csa7G279800 vs. NCBI nr
Match: gi|700189160|gb|KGN44393.1| (hypothetical protein Csa_7G279750 [Cucumis sativus])

HSP 1 Score: 41.2 bits (95), Expect = 2.0e+00
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 1


Query: 53 KKLRGNSRLLAEAILQLPVERKRAKPFQARM 84
          +K   N+RLL EA LQ PVER+RAKP +ARM
Sbjct: 59 RKYVENTRLLVEATLQSPVERRRAKPIRARM 89

The following BLAST results are available for this feature:

BLAST of Csa7G279800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4I4_CUCSA	2.1e-81	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279800 PE=4 SV=1	[more]
A0A0A0K4H8_CUCSA	3.3e-10	47.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279750 PE=4 SV=1	[more]
A0A0A0K4H8_CUCSA	1.4e+00	64.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279750 PE=4 SV=1	[more]

BLAST of Csa7G279800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189165\|gb\|KGN44398.1\|	3.0e-81	100.00	hypothetical protein Csa_7G279800 [Cucumis sativus]	[more]
gi\|700189160\|gb\|KGN44393.1\|	4.7e-10	47.52	hypothetical protein Csa_7G279750 [Cucumis sativus]	[more]
gi\|700189160\|gb\|KGN44393.1\|	2.0e+00	64.52	hypothetical protein Csa_7G279750 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU150407	cucumber EST collection version 3.0	transcribed_cluster
CU157171	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G279800.1	Csa7G279800.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU150407	CU150407	transcribed_cluster
CU157171	CU157171	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G279800	Watermelon (97103) v2	cuwmbB571
Csa7G279800	Wax gourd	cuwgoB707
Csa7G279800	Cucumber (Gy14) v1	cgycuB348
Csa7G279800	Watermelon (Charleston Gray)	cuwcgB525
Csa7G279800	Watermelon (97103) v1	cuwmB567
Csa7G279800	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G279800	Cucumber (Gy14) v2	cgybcuB323