Csa6G505250 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G505250
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 25677568 .. 25677839 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATCGGAGCACTAAAACGACCAATATATTTAGTTGAGTCGGTCGCCGGGTGAAGAAAAAGAGCTGAGTTGATAAAAGAGAGACGCCTCCGAGCTCGGCGGTGAGGAGCGGTGGAGGGGGGGTGATATAGATTGGGTTATGTCCACGTAGGACGGCGGTGGTGGTGGTCGGCTGCGGATCCAATCATGCGGCGGACCGCATCATTAAACCCTTCTCCCTCCAGACCCCACACCCAATATGGGTTTCCACCAAAAACTCTTACCTCTAA

mRNA sequence

ATGGTGATCGGAGCACTAAAACGACCAATATATTTAGTTGAGTCGGTCGCCGGGACGGCGGTGGTGGTGGTCGGCTGCGGATCCAATCATGCGGCGGACCGCATCATTAAACCCTTCTCCCTCCAGACCCCACACCCAATATGGGTTTCCACCAAAAACTCTTACCTCTAA

Coding sequence (CDS)

ATGGTGATCGGAGCACTAAAACGACCAATATATTTAGTTGAGTCGGTCGCCGGGACGGCGGTGGTGGTGGTCGGCTGCGGATCCAATCATGCGGCGGACCGCATCATTAAACCCTTCTCCCTCCAGACCCCACACCCAATATGGGTTTCCACCAAAAACTCTTACCTCTAA

Protein sequence

MVIGALKRPIYLVESVAGTAVVVVGCGSNHAADRIIKPFSLQTPHPIWVSTKNSYL*
Homology
[Close]
BLAST of Csa6G505250 vs. TrEMBL
Match: A0A0A0KMC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505250 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.6e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MVIGALKRPIYLVESVAGTAVVVVGCGSNHAADRIIKPFSLQTPHPIWVSTKNSYL 57
          MVIGALKRPIYLVESVAGTAVVVVGCGSNHAADRIIKPFSLQTPHPIWVSTKNSYL
Sbjct: 1  MVIGALKRPIYLVESVAGTAVVVVGCGSNHAADRIIKPFSLQTPHPIWVSTKNSYL 56

[Close]
BLAST of Csa6G505250 vs. NCBI nr
Match: gi|700193692|gb|KGN48896.1| (hypothetical protein Csa_6G505250 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 2.3e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MVIGALKRPIYLVESVAGTAVVVVGCGSNHAADRIIKPFSLQTPHPIWVSTKNSYL 57
          MVIGALKRPIYLVESVAGTAVVVVGCGSNHAADRIIKPFSLQTPHPIWVSTKNSYL
Sbjct: 1  MVIGALKRPIYLVESVAGTAVVVVGCGSNHAADRIIKPFSLQTPHPIWVSTKNSYL 56

The following BLAST results are available for this feature:
BLAST of Csa6G505250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMC8_CUCSA1.6e-23100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505250 PE=4 SV=1[more]
BLAST of Csa6G505250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193692|gb|KGN48896.1|2.3e-23100.00hypothetical protein Csa_6G505250 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G505250.1Csa6G505250.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..26
score:

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G505250CSPI06G31600Wild cucumber (PI 183967)cpicuB313
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G505250Watermelon (97103) v2cuwmbB412
Csa6G505250Watermelon (97103) v2cuwmbB464
Csa6G505250Watermelon (97103) v2cuwmbB503
Csa6G505250Wax gourdcuwgoB628
Csa6G505250Cucumber (Chinese Long) v2cucuB065
Csa6G505250Cucumber (Chinese Long) v2cucuB112
Csa6G505250Cucumber (Gy14) v1cgycuB027
Csa6G505250Cucumber (Gy14) v1cgycuB241
Csa6G505250Cucumber (Gy14) v1cgycuB484
Csa6G505250Cucurbita maxima (Rimu)cmacuB200
Csa6G505250Cucurbita maxima (Rimu)cmacuB681
Csa6G505250Cucurbita maxima (Rimu)cmacuB877
Csa6G505250Cucurbita moschata (Rifu)cmocuB181
Csa6G505250Cucurbita moschata (Rifu)cmocuB670
Csa6G505250Cucurbita moschata (Rifu)cmocuB865
Csa6G505250Melon (DHL92) v3.5.1cumeB480
Csa6G505250Melon (DHL92) v3.5.1cumeB485
Csa6G505250Melon (DHL92) v3.5.1cumeB503
Csa6G505250Watermelon (Charleston Gray)cuwcgB432
Csa6G505250Watermelon (Charleston Gray)cuwcgB512
Csa6G505250Watermelon (97103) v1cuwmB473
Csa6G505250Watermelon (97103) v1cuwmB496
Csa6G505250Watermelon (97103) v1cuwmB500
Csa6G505250Cucurbita pepo (Zucchini)cpecuB085
Csa6G505250Cucurbita pepo (Zucchini)cpecuB286
Csa6G505250Cucurbita pepo (Zucchini)cpecuB503
Csa6G505250Cucurbita pepo (Zucchini)cpecuB585
Csa6G505250Bottle gourd (USVL1VR-Ls)culsiB434
Csa6G505250Bottle gourd (USVL1VR-Ls)culsiB451
Csa6G505250Bottle gourd (USVL1VR-Ls)culsiB484
Csa6G505250Cucumber (Gy14) v2cgybcuB077
Csa6G505250Cucumber (Gy14) v2cgybcuB140
Csa6G505250Cucumber (Gy14) v2cgybcuB281
Csa6G505250Melon (DHL92) v3.6.1cumedB459
Csa6G505250Melon (DHL92) v3.6.1cumedB465
Csa6G505250Melon (DHL92) v3.6.1cumedB483
Csa6G505250Silver-seed gourdcarcuB0441
Csa6G505250Silver-seed gourdcarcuB0663
Csa6G505250Silver-seed gourdcarcuB0996