CSPI06G31600 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G31600
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 26852770 .. 26853041 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATCGGAGCACTAAAACGACCAATATATTTAGTTGAGTCGGTCGCCGGGTGAAGAAAAAGAGCTGAGTTGATAAAAGAAAGACGCCTCCGAGCTCGGCGGTGAGGAGCGGTGGAGGGGGGGTGATATAGATTGGGTTATGTCCACGTAGGACGGCGGTGGTGGTGGTCGGCTGCGGATCCAATCATGCGGCGGACCGCATCATTAAACCCTTCTCCCTCCAGACCCCACACCCAATATGGGTTTCCACCAAAAACTCTTACCTCTAA

mRNA sequence

ATGGTGATCGGAGCACTAAAACGACCAATATATTTAGTTGAGTCGGTCGCCGGGACGGCGGTGGTGGTGGTCGGCTGCGGATCCAATCATGCGGCGGACCGCATCATTAAACCCTTCTCCCTCCAGACCCCACACCCAATATGGGTTTCCACCAAAAACTCTTACCTCTAA

Coding sequence (CDS)

ATGGTGATCGGAGCACTAAAACGACCAATATATTTAGTTGAGTCGGTCGCCGGGACGGCGGTGGTGGTGGTCGGCTGCGGATCCAATCATGCGGCGGACCGCATCATTAAACCCTTCTCCCTCCAGACCCCACACCCAATATGGGTTTCCACCAAAAACTCTTACCTCTAA
Homology
[Close]
BLAST of CSPI06G31600 vs. TrEMBL
Match: A0A0A0KMC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505250 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 9.3e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MVIGALKRPIYLVESVAGTAVVVVGCGSNHAADRIIKPFSLQTPHPIWVSTKNSYL 57
          MVIGALKRPIYLVESVAGTAVVVVGCGSNHAADRIIKPFSLQTPHPIWVSTKNSYL
Sbjct: 1  MVIGALKRPIYLVESVAGTAVVVVGCGSNHAADRIIKPFSLQTPHPIWVSTKNSYL 56

[Close]
BLAST of CSPI06G31600 vs. NCBI nr
Match: gi|700193692|gb|KGN48896.1| (hypothetical protein Csa_6G505250 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MVIGALKRPIYLVESVAGTAVVVVGCGSNHAADRIIKPFSLQTPHPIWVSTKNSYL 57
          MVIGALKRPIYLVESVAGTAVVVVGCGSNHAADRIIKPFSLQTPHPIWVSTKNSYL
Sbjct: 1  MVIGALKRPIYLVESVAGTAVVVVGCGSNHAADRIIKPFSLQTPHPIWVSTKNSYL 56

The following BLAST results are available for this feature:
BLAST of CSPI06G31600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G31600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMC8_CUCSA9.3e-24100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505250 PE=4 SV=1[more]
BLAST of CSPI06G31600 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G31600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193692|gb|KGN48896.1|1.3e-23100.00hypothetical protein Csa_6G505250 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G31600.1CSPI06G31600.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..26
score:

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G31600Csa6G505250Cucumber (Chinese Long) v2cpicuB313
CSPI06G31600CsaV3_6G046930Cucumber (Chinese Long) v3cpicucB363
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G31600Cucurbita pepo (Zucchini)cpecpiB080
CSPI06G31600Cucurbita pepo (Zucchini)cpecpiB288
CSPI06G31600Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G31600Cucurbita pepo (Zucchini)cpecpiB586
CSPI06G31600Bottle gourd (USVL1VR-Ls)cpilsiB412
CSPI06G31600Bottle gourd (USVL1VR-Ls)cpilsiB439
CSPI06G31600Bottle gourd (USVL1VR-Ls)cpilsiB458
CSPI06G31600Bottle gourd (USVL1VR-Ls)cpilsiB493
CSPI06G31600Melon (DHL92) v3.6.1cpimedB468
CSPI06G31600Melon (DHL92) v3.6.1cpimedB474
CSPI06G31600Melon (DHL92) v3.6.1cpimedB493
CSPI06G31600Cucumber (Gy14) v2cgybcpiB078
CSPI06G31600Cucumber (Gy14) v2cgybcpiB287
CSPI06G31600Silver-seed gourdcarcpiB0446
CSPI06G31600Silver-seed gourdcarcpiB0672
CSPI06G31600Silver-seed gourdcarcpiB1019
CSPI06G31600Cucumber (Chinese Long) v3cpicucB322
CSPI06G31600Cucumber (Chinese Long) v3cpicucB336
CSPI06G31600Watermelon (97103) v2cpiwmbB433
CSPI06G31600Watermelon (97103) v2cpiwmbB489
CSPI06G31600Watermelon (97103) v2cpiwmbB529
CSPI06G31600Wax gourdcpiwgoB634
CSPI06G31600Wild cucumber (PI 183967)cpicpiB077
CSPI06G31600Wild cucumber (PI 183967)cpicpiB127
CSPI06G31600Watermelon (97103) v1cpiwmB519
CSPI06G31600Cucumber (Gy14) v1cgycpiB028
CSPI06G31600Cucumber (Gy14) v1cgycpiB247
CSPI06G31600Cucumber (Gy14) v1cgycpiB510
CSPI06G31600Cucurbita maxima (Rimu)cmacpiB203
CSPI06G31600Cucurbita maxima (Rimu)cmacpiB689
CSPI06G31600Cucurbita maxima (Rimu)cmacpiB893
CSPI06G31600Cucurbita moschata (Rifu)cmocpiB026
CSPI06G31600Cucurbita moschata (Rifu)cmocpiB185
CSPI06G31600Cucurbita moschata (Rifu)cmocpiB681
CSPI06G31600Cucurbita moschata (Rifu)cmocpiB802
CSPI06G31600Cucurbita moschata (Rifu)cmocpiB873
CSPI06G31600Cucumber (Chinese Long) v2cpicuB271
CSPI06G31600Cucumber (Chinese Long) v2cpicuB285
CSPI06G31600Melon (DHL92) v3.5.1cpimeB478
CSPI06G31600Melon (DHL92) v3.5.1cpimeB488
CSPI06G31600Melon (DHL92) v3.5.1cpimeB508
CSPI06G31600Watermelon (Charleston Gray)cpiwcgB453
CSPI06G31600Watermelon (Charleston Gray)cpiwcgB539
CSPI06G31600Watermelon (97103) v1cpiwmB489
CSPI06G31600Watermelon (97103) v1cpiwmB513