Csa6G439950 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G439950
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 20630746 .. 20631585 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTGAAGCAACTTCATGTGGTAGTGGGTAATTAGCAGCTTCCAGATGCTTTCTCTTCAGTCTCTCTTCAATCAAAACCTGAGGCCGCCATTTGTAACCACCAAGAAATGCTCAGATGGTGTTTTGAAGATAAGGAAATTTCACCCACTTCATTATTCTGCTTCTCATTTTTCCATTTTGTGTGCAAAGGAGTCAGATTCTCAACAGTTTGAGGTTGACCCAGATAAGGCTAGGCAGGCCCTTCAAGAGCTTGATCAACAGCTTCAATCCTTCTCCAAGAAACAAGTCTCTTCTCCCAAGAAGAAAGGTAACTCCTCATCTTTTGAATCCGAAGTCTGAACTAAAATTTGTTGTTGTGTAACTTTGGTTGAAGACTGGACTGGACTTAGTATTATATAGAAGAAACCTCTATCACTACTTAGTATTGAGATTTTTGGTTTTGAAATTTTTTTGCAGTTGTTCAAGATATGAATGTTCCAAGAAGTCAAATGAGAGGAGAAATGACAGAGATTTCAGAGACTCTGTTAGCAAATTCAGCTGTTGTCCTCTTCATCTTCTCCATTTTCTACAATGTGCTGTTCTATACTGTCATAAAGCCTTCCATTGATGTTCCATTACCAAGTTCTATCAGTTCTGACTTTGAGAAAGAATCTACTCAGCCATCAGTTTTGCAGCAGCTTCCACTTTCATCTATGTCCATATCCCCCTCACTTCTTAGTTAAAATATTTAATTATGATTACAGAACTTCGACCATAGCTATCTAAATTGTATACATCAAGAAAAAGTGATCAAGATTATGTTGTTTACAGAGTATTATATTGATGGTATGCCAAAGAAAG

mRNA sequence

ATGCTTTCTCTTCAGTCTCTCTTCAATCAAAACCTGAGGCCGCCATTTGTAACCACCAAGAAATGCTCAGATGGTGTTTTGAAGATAAGGAAATTTCACCCACTTCATTATTCTGCTTCTCATTTTTCCATTTTGTGTGCAAAGGAGTCAGATTCTCAACAGTTTGAGGTTGACCCAGATAAGGCTAGGCAGGCCCTTCAAGAGCTTGATCAACAGCTTCAATCCTTCTCCAAGAAACAAGTCTCTTCTCCCAAGAAGAAAGTTGTTCAAGATATGAATGTTCCAAGAAGTCAAATGAGAGGAGAAATGACAGAGATTTCAGAGACTCTGTTAGCAAATTCAGCTGTTGTCCTCTTCATCTTCTCCATTTTCTACAATGTGCTGTTCTATACTGTCATAAAGCCTTCCATTGATGTTCCATTACCAAGTTCTATCAGTTCTGACTTTGAGAAAGAATCTACTCAGCCATCAGTTTTGCAGCAGCTTCCACTTTCATCTATGTCCATATCCCCCTCACTTCTTAGTTAA

Coding sequence (CDS)

ATGCTTTCTCTTCAGTCTCTCTTCAATCAAAACCTGAGGCCGCCATTTGTAACCACCAAGAAATGCTCAGATGGTGTTTTGAAGATAAGGAAATTTCACCCACTTCATTATTCTGCTTCTCATTTTTCCATTTTGTGTGCAAAGGAGTCAGATTCTCAACAGTTTGAGGTTGACCCAGATAAGGCTAGGCAGGCCCTTCAAGAGCTTGATCAACAGCTTCAATCCTTCTCCAAGAAACAAGTCTCTTCTCCCAAGAAGAAAGTTGTTCAAGATATGAATGTTCCAAGAAGTCAAATGAGAGGAGAAATGACAGAGATTTCAGAGACTCTGTTAGCAAATTCAGCTGTTGTCCTCTTCATCTTCTCCATTTTCTACAATGTGCTGTTCTATACTGTCATAAAGCCTTCCATTGATGTTCCATTACCAAGTTCTATCAGTTCTGACTTTGAGAAAGAATCTACTCAGCCATCAGTTTTGCAGCAGCTTCCACTTTCATCTATGTCCATATCCCCCTCACTTCTTAGTTAA

Protein sequence

MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPDKARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFIFSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS*

Homology

[Close]

BLAST of Csa6G439950 vs. TrEMBL
Match: A0A0A0KH36_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G439950 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 1.6e-90
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPD 60
           MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPD
Sbjct: 1   MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPD 60

Query: 61  KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFI 120
           KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFI
Sbjct: 61  KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFI 120

Query: 121 FSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS 176
           FSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS
Sbjct: 121 FSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS 175

[Close]

BLAST of Csa6G439950 vs. TrEMBL
Match: B9GEZ9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s26450g PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-22
Identity = 58/131 (44.27%), Postives = 92/131 (70.23%), Query Frame = 1


Query: 44  ILCAKESDSQQFEVDPDKARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEM 103
           I+ A E DS+++E+D DKA++ALQ+LDQQLQ+FS+KQ+SSPK +   D+ + R +M  E+
Sbjct: 60  IVHAVEKDSEKYEIDSDKAKEALQKLDQQLQAFSEKQISSPKIR-ASDVKLTRDEMTEEV 119

Query: 104 TEISETLLANSAVVLFIFSIFYNVLFYTVIKPSIDVPLP--------SSISSDFEKESTQ 163
            E+S ++L  +A  LF+F+IFYN+ F TV++PS+D PLP        +  ++  E++  +
Sbjct: 120 PEVSGSVLVYTAAALFLFTIFYNIFFLTVLQPSVDGPLPKPEPETIQAITATTMERKPPK 179

Query: 164 PSVLQQLPLSS 167
            ++LQ LPL S
Sbjct: 180 EAILQLLPLMS 189

[Close]

BLAST of Csa6G439950 vs. TrEMBL
Match: B9RIC8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1577830 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-22
Identity = 66/131 (50.38%), Postives = 90/131 (68.70%), Query Frame = 1


Query: 38  SASHFSILCAKESDSQQFEVDPDKARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRS 97
           S+S   ++ A E DSQQ+E+D +KAR+ALQ+LDQQLQ  SKKQV+ PK K V D+ + R 
Sbjct: 44  SSSSSCVVRALEKDSQQYEIDQEKAREALQKLDQQLQDLSKKQVTPPKVK-VSDVKITRD 103

Query: 98  QMRGEMTEISETLLANSAVVLFIFSIFYNVLFYTVIKPSIDVPLPSSI--SSDFEKESTQ 157
           Q   E+ E+S + LA  A  LF+F+I YN+L+ TVI PS D P P+ +  ++D E ES Q
Sbjct: 104 QTIEEVPEMSGSFLAFFAAGLFLFTILYNLLYITVIDPSGDAPEPTPVTPTTDLENESPQ 163

Query: 158 -PSVLQQLPLS 166
             +VLQ LPL+
Sbjct: 164 VAAVLQPLPLA 173

[Close]

BLAST of Csa6G439950 vs. TrEMBL
Match: D7SL34_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02290 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.0e-22
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 1


Query: 38  SASHFSILCAKESDSQQFEVDPDKARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRS 97
           SAS  S + A + DSQQFEVDPDKAR+ALQ+LDQQLQS S+KQ  +P +K   + N+   
Sbjct: 44  SASSVSTVHAVDKDSQQFEVDPDKAREALQKLDQQLQSLSQKQ-DTPPRKTASNQNLAGD 103

Query: 98  QMRGEMTEISETLLANSAVVLFIFSIFYNVLFYTVIKPSID 139
           QMR E  E+S + LA SA+ L +F+IFYNVLF TVI+PSID
Sbjct: 104 QMREEPVELSGSFLAYSALALVVFTIFYNVLFLTVIQPSID 143

[Close]

BLAST of Csa6G439950 vs. TrEMBL
Match: M5WL13_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026884mg PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.8e-21
Identity = 72/156 (46.15%), Postives = 93/156 (59.62%), Query Frame = 1


Query: 1   MLSLQSLFNQNLRP----PFVTTKKCS----------DGVLKIRKFHPLHYSASHFS-IL 60
           ML L SL   N  P    PF  T K            +GV K +K +P + S+S  S I+
Sbjct: 1   MLPLYSLSLHNKPPLSLHPFSLTNKLKTHISELPVPGNGVFKKKKSNPYYNSSSSSSCIV 60

Query: 61  CAKESDSQQFEVDPDKARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRG-EMT 120
            A E +SQQF+VDPDKAR+AL+ LDQQLQS S++Q   P++K   D++  R Q    E+ 
Sbjct: 61  YAAEKESQQFDVDPDKAREALKNLDQQLQSRSQRQARPPRQK-APDVSFARDQTEDEEVQ 120

Query: 121 EISETLLANSAVVLFIFSIFYNVLFYTVIKPSIDVP 141
           E S +    +AV +F F+IFYNVLFY VIKPSID P
Sbjct: 121 EFSGSFFTITAVAVFAFTIFYNVLFYNVIKPSIDGP 155

[Close]

BLAST of Csa6G439950 vs. TAIR10
Match: AT2G01870.1 (AT2G01870.1 unknown protein)

HSP 1 Score: 71.2 bits (173), Expect = 7.0e-13
Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 1


Query: 55  FEVDPDKARQALQELDQQLQSFSKKQ---VSSPKKKVVQDMNVPRSQMRGEMTEISETLL 114
           F++D DKAR+AL++LDQQ++S + ++   ++     VV+  N P   M  E  EIS + L
Sbjct: 40  FQIDRDKAREALKQLDQQIESQADEKPRIINKTSSDVVRTNNDPI--MFEEPPEISGSFL 99

Query: 115 ANSAVVLFIFSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSM 168
            +SA VL   ++FYN+LF TVIKPS+D   P S+  +    +   S + + PLSS+
Sbjct: 100 TSSAFVLLALTLFYNILFITVIKPSMDG--PESVPEE-NSVAMSDSDIVKFPLSSL 150

[Close]

BLAST of Csa6G439950 vs. NCBI nr
Match: gi|778717033|ref|XP_011657640.1| (PREDICTED: uncharacterized protein LOC101220685 [Cucumis sativus])

HSP 1 Score: 340.1 bits (871), Expect = 2.3e-90
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPD 60
           MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPD
Sbjct: 1   MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPD 60

Query: 61  KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFI 120
           KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFI
Sbjct: 61  KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFI 120

Query: 121 FSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS 176
           FSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS
Sbjct: 121 FSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS 175

[Close]

BLAST of Csa6G439950 vs. NCBI nr
Match: gi|659097587|ref|XP_008449706.1| (PREDICTED: uncharacterized protein LOC103491505 [Cucumis melo])

HSP 1 Score: 321.2 bits (822), Expect = 1.1e-84
Identity = 164/175 (93.71%), Postives = 168/175 (96.00%), Query Frame = 1


Query: 1   MLSLQSLFNQNLRPPFVTTKKCSDGVLKIRKFHPLHYSASHFSILCAKESDSQQFEVDPD 60
           MLSLQS FNQN RPPF+ TKKCSDGVLKIRKFHP HYSASHFSILCA+ESDSQQFEVDPD
Sbjct: 1   MLSLQSFFNQNQRPPFIATKKCSDGVLKIRKFHPFHYSASHFSILCARESDSQQFEVDPD 60

Query: 61  KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEMTEISETLLANSAVVLFI 120
           KARQALQELDQQLQSFSKKQVSSPKKKVVQDMN+PRSQMRGEMTEI  TLLANSAVVLFI
Sbjct: 61  KARQALQELDQQLQSFSKKQVSSPKKKVVQDMNLPRSQMRGEMTEIPGTLLANSAVVLFI 120

Query: 121 FSIFYNVLFYTVIKPSIDVPLPSSISSDFEKESTQPSVLQQLPLSSMSISPSLLS 176
           FSIFYNVLFYTVIKPSID PLPSSISSDFEKEST+PSVLQQLPLSSMSISPSLLS
Sbjct: 121 FSIFYNVLFYTVIKPSIDGPLPSSISSDFEKESTRPSVLQQLPLSSMSISPSLLS 175

[Close]

BLAST of Csa6G439950 vs. NCBI nr
Match: gi|743924153|ref|XP_011006193.1| (PREDICTED: uncharacterized protein LOC105112258 [Populus euphratica])

HSP 1 Score: 115.5 bits (288), Expect = 9.1e-23
Identity = 59/131 (45.04%), Postives = 91/131 (69.47%), Query Frame = 1


Query: 44  ILCAKESDSQQFEVDPDKARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEM 103
           I+ A E DS+++E+D DKA++ALQ+LDQQLQ+FS+KQ+SSPK +   D+ + R +M  E+
Sbjct: 60  IVHAVEKDSEKYEIDSDKAKEALQKLDQQLQAFSEKQISSPKIR-ASDVKLTRDEMTEEV 119

Query: 104 TEISETLLANSAVVLFIFSIFYNVLFYTVIKPSIDVPLPSS--------ISSDFEKESTQ 163
            E+S ++L  +A  LF+F+IFYN+ F TV++PS+D PLP           ++  E+E  +
Sbjct: 120 PEVSGSVLVYTAAALFLFTIFYNIFFLTVLQPSVDGPLPKPEPETIQEITATTMEREPPK 179

Query: 164 PSVLQQLPLSS 167
            ++LQ LPL S
Sbjct: 180 EAILQLLPLMS 189

[Close]

BLAST of Csa6G439950 vs. NCBI nr
Match: gi|743904129|ref|XP_011045427.1| (PREDICTED: uncharacterized protein LOC105140332 [Populus euphratica])

HSP 1 Score: 115.5 bits (288), Expect = 9.1e-23
Identity = 59/131 (45.04%), Postives = 91/131 (69.47%), Query Frame = 1


Query: 44  ILCAKESDSQQFEVDPDKARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEM 103
           I+ A E DS+++E+D DKA++ALQ+LDQQLQ+FS+KQ+SSPK +   D+ + R +M  E+
Sbjct: 60  IVHAVEKDSEKYEIDSDKAKEALQKLDQQLQAFSEKQISSPKIR-ASDVKLTRDEMTEEV 119

Query: 104 TEISETLLANSAVVLFIFSIFYNVLFYTVIKPSIDVPLPSS--------ISSDFEKESTQ 163
            E+S ++L  +A  LF+F+IFYN+ F TV++PS+D PLP           ++  E+E  +
Sbjct: 120 PEVSGSVLVYTAAALFLFTIFYNIFFLTVLQPSVDGPLPKPEPETIQEITATTMEREPPK 179

Query: 164 PSVLQQLPLSS 167
            ++LQ LPL S
Sbjct: 180 EAILQLLPLMS 189

[Close]

BLAST of Csa6G439950 vs. NCBI nr
Match: gi|566151116|ref|XP_002299905.2| (hypothetical protein POPTR_0001s26450g [Populus trichocarpa])

HSP 1 Score: 114.0 bits (284), Expect = 2.7e-22
Identity = 58/131 (44.27%), Postives = 92/131 (70.23%), Query Frame = 1


Query: 44  ILCAKESDSQQFEVDPDKARQALQELDQQLQSFSKKQVSSPKKKVVQDMNVPRSQMRGEM 103
           I+ A E DS+++E+D DKA++ALQ+LDQQLQ+FS+KQ+SSPK +   D+ + R +M  E+
Sbjct: 60  IVHAVEKDSEKYEIDSDKAKEALQKLDQQLQAFSEKQISSPKIR-ASDVKLTRDEMTEEV 119

Query: 104 TEISETLLANSAVVLFIFSIFYNVLFYTVIKPSIDVPLP--------SSISSDFEKESTQ 163
            E+S ++L  +A  LF+F+IFYN+ F TV++PS+D PLP        +  ++  E++  +
Sbjct: 120 PEVSGSVLVYTAAALFLFTIFYNIFFLTVLQPSVDGPLPKPEPETIQAITATTMERKPPK 179

Query: 164 PSVLQQLPLSS 167
            ++LQ LPL S
Sbjct: 180 EAILQLLPLMS 189

The following BLAST results are available for this feature:

BLAST of Csa6G439950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH36_CUCSA	1.6e-90	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G439950 PE=4 SV=1	[more]
B9GEZ9_POPTR	1.9e-22	44.27	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s26450g PE=4 SV=1	[more]
B9RIC8_RICCO	3.2e-22	50.38	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1577830 PE=4 SV=1	[more]
D7SL34_VITVI	7.0e-22	59.41	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02290 PE=4 SV=...	[more]
M5WL13_PRUPE	7.8e-21	46.15	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026884mg PE=4 SV=1	[more]

BLAST of Csa6G439950 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01870.1	7.0e-13	39.66	unknown protein	[more]

BLAST of Csa6G439950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778717033\|ref\|XP_011657640.1\|	2.3e-90	100.00	PREDICTED: uncharacterized protein LOC101220685 [Cucumis sativus]	[more]
gi\|659097587\|ref\|XP_008449706.1\|	1.1e-84	93.71	PREDICTED: uncharacterized protein LOC103491505 [Cucumis melo]	[more]
gi\|743924153\|ref\|XP_011006193.1\|	9.1e-23	45.04	PREDICTED: uncharacterized protein LOC105112258 [Populus euphratica]	[more]
gi\|743904129\|ref\|XP_011045427.1\|	9.1e-23	45.04	PREDICTED: uncharacterized protein LOC105140332 [Populus euphratica]	[more]
gi\|566151116\|ref\|XP_002299905.2\|	2.7e-22	44.27	hypothetical protein POPTR_0001s26450g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0044723	single-organism carbohydrate metabolic process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU115816	cucumber EST collection version 3.0	transcribed_cluster
CU132858	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G439950.1	Csa6G439950.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU115816	CU115816	transcribed_cluster
CU132858	CU132858	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37716	FAMILY NOT NAMED	coord: 29..138 score: 6.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G439950	Cla008552	Watermelon (97103) v1	cuwmB513
Csa6G439950	MELO3C014589	Melon (DHL92) v3.5.1	cumeB491
Csa6G439950	ClCG02G023170	Watermelon (Charleston Gray)	cuwcgB438
Csa6G439950	Lsi10G010670	Bottle gourd (USVL1VR-Ls)	culsiB414
Csa6G439950	MELO3C014589.2	Melon (DHL92) v3.6.1	cumedB471
Csa6G439950	Cla97C02G049260	Watermelon (97103) v2	cuwmbB428
Csa6G439950	Bhi10G000227	Wax gourd	cuwgoB596
Csa6G439950	CSPI06G24170	Wild cucumber (PI 183967)	cpicuB313
Csa6G439950	Cucsa.124170	Cucumber (Gy14) v1	cgycuB167
Csa6G439950	CmaCh02G012530	Cucurbita maxima (Rimu)	cmacuB630
Csa6G439950	CmoCh02G012940	Cucurbita moschata (Rifu)	cmocuB620
Csa6G439950	Carg02705	Silver-seed gourd	carcuB0941

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G439950	Watermelon (97103) v2	cuwmbB452
Csa6G439950	Cucumber (Chinese Long) v2	cucuB043
Csa6G439950	Cucurbita maxima (Rimu)	cmacuB145
Csa6G439950	Cucurbita maxima (Rimu)	cmacuB562
Csa6G439950	Cucurbita moschata (Rifu)	cmocuB131
Csa6G439950	Cucurbita moschata (Rifu)	cmocuB552
Csa6G439950	Cucurbita pepo (Zucchini)	cpecuB281
Csa6G439950	Cucurbita pepo (Zucchini)	cpecuB624
Csa6G439950	Cucurbita pepo (Zucchini)	cpecuB684
Csa6G439950	Cucurbita pepo (Zucchini)	cpecuB742
Csa6G439950	Bottle gourd (USVL1VR-Ls)	culsiB467
Csa6G439950	Cucumber (Gy14) v2	cgybcuB281
Csa6G439950	Silver-seed gourd	carcuB0553