Csa6G126270 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G126270
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 8716984 .. 8717282 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTTCCTTTTGGCATAAGAACCAGGCCAAAGTCCTCGTCAAACCTTGAACGTGAGACTAATTCTGAGGAAATCTACTTAACGTCTTGTAGTTCATCTACCTCTTACTTAGCTAAAAGTTCAGATTAAGTTCTAAAACTTGTCTGAAACTCTCTTATTTATACACTTTTTCAATGAGGATTTCGACGTCGGAATGATTACCTCTATCCAGACAACGAATCACATACCGACACATAGCTCTCAATGGACGGTTGGATCAGAATGCTGACTTACTAAGCATCGTCCTTCAGACGTAA

mRNA sequence

ATGAGGTTTCCTTTTGGCATAAGAACCAGGCCAAAGTCCTCGTCAAACCTTGAACGTGAGACTAATTCTGAGGAAATCTACTTAACACAACGAATCACATACCGACACATAGCTCTCAATGGACGGTTGGATCAGAATGCTGACTTACTAAGCATCGTCCTTCAGACGTAA

Coding sequence (CDS)

ATGAGGTTTCCTTTTGGCATAAGAACCAGGCCAAAGTCCTCGTCAAACCTTGAACGTGAGACTAATTCTGAGGAAATCTACTTAACACAACGAATCACATACCGACACATAGCTCTCAATGGACGGTTGGATCAGAATGCTGACTTACTAAGCATCGTCCTTCAGACGTAA

Protein sequence

MRFPFGIRTRPKSSSNLERETNSEEIYLTQRITYRHIALNGRLDQNADLLSIVLQT*
Homology
[Close]
BLAST of Csa6G126270 vs. TrEMBL
Match: A0A0A0KCZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G126270 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MRFPFGIRTRPKSSSNLERETNSEEIYLTQRITYRHIALNGRLDQNADLLSIVLQT 57
          MRFPFGIRTRPKSSSNLERETNSEEIYLTQRITYRHIALNGRLDQNADLLSIVLQT
Sbjct: 1  MRFPFGIRTRPKSSSNLERETNSEEIYLTQRITYRHIALNGRLDQNADLLSIVLQT 56

[Close]
BLAST of Csa6G126270 vs. NCBI nr
Match: gi|700191510|gb|KGN46714.1| (hypothetical protein Csa_6G126270 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MRFPFGIRTRPKSSSNLERETNSEEIYLTQRITYRHIALNGRLDQNADLLSIVLQT 57
          MRFPFGIRTRPKSSSNLERETNSEEIYLTQRITYRHIALNGRLDQNADLLSIVLQT
Sbjct: 1  MRFPFGIRTRPKSSSNLERETNSEEIYLTQRITYRHIALNGRLDQNADLLSIVLQT 56

The following BLAST results are available for this feature:
BLAST of Csa6G126270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCZ0_CUCSA1.3e-22100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G126270 PE=4 SV=1[more]
BLAST of Csa6G126270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191510|gb|KGN46714.1|1.9e-22100.00hypothetical protein Csa_6G126270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G126270.1Csa6G126270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G126270CSPI06G10220Wild cucumber (PI 183967)cpicuB314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G126270Watermelon (97103) v1cuwmB530
Csa6G126270Cucurbita pepo (Zucchini)cpecuB289
Csa6G126270Cucurbita pepo (Zucchini)cpecuB761
Csa6G126270Bottle gourd (USVL1VR-Ls)culsiB423
Csa6G126270Bottle gourd (USVL1VR-Ls)culsiB424
Csa6G126270Cucumber (Gy14) v2cgybcuB282
Csa6G126270Melon (DHL92) v3.6.1cumedB427
Csa6G126270Silver-seed gourdcarcuB0380
Csa6G126270Silver-seed gourdcarcuB0870
Csa6G126270Watermelon (97103) v2cuwmbB446
Csa6G126270Wax gourdcuwgoB600
Csa6G126270Cucumber (Gy14) v1cgycuB155
Csa6G126270Cucurbita maxima (Rimu)cmacuB568
Csa6G126270Cucurbita maxima (Rimu)cmacuB624
Csa6G126270Cucurbita moschata (Rifu)cmocuB559
Csa6G126270Cucurbita moschata (Rifu)cmocuB615
Csa6G126270Melon (DHL92) v3.5.1cumeB446
Csa6G126270Watermelon (Charleston Gray)cuwcgB458