CSPI06G10220 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G10220
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 8831720 .. 8832018 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTTCCTTTTGGCATAAGAACCAGGCCAAAGTCCTCGTTAAACCTTGAACGTGAGACTAATTCTGAGGAAATCTACTTAACGTCTTGTAGTTCATCTACCTCTTACTTAGCTAAAAGTTCAGATTAAGTTCTAAAACTTGTCTGAAACTCTCTTATTTATACACTTTTTCAATGAGGATTTCGACGTCGGAATGATTACCTCTATCCAGACAACGAATCACATACCAGCACATAACTCTCAATGGACGGTTGGATCAGAATGCTGACTTACTAAGCATCGTCCTTCAGACGTAA

mRNA sequence

ATGAGGTTTCCTTTTGGCATAAGAACCAGGCCAAAGTCCTCGTTAAACCTTGAACGTGAGACTAATTCTGAGGAAATCTACTTAACACAACGAATCACATACCAGCACATAACTCTCAATGGACGGTTGGATCAGAATGCTGACTTACTAAGCATCGTCCTTCAGACGTAA

Coding sequence (CDS)

ATGAGGTTTCCTTTTGGCATAAGAACCAGGCCAAAGTCCTCGTTAAACCTTGAACGTGAGACTAATTCTGAGGAAATCTACTTAACACAACGAATCACATACCAGCACATAACTCTCAATGGACGGTTGGATCAGAATGCTGACTTACTAAGCATCGTCCTTCAGACGTAA
Homology
[Close]
BLAST of CSPI06G10220 vs. TrEMBL
Match: A0A0A0KCZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G126270 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.6e-21
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 1 

Query: 1  MRFPFGIRTRPKSSLNLERETNSEEIYLTQRITYQHITLNGRLDQNADLLSIVLQT 57
          MRFPFGIRTRPKSS NLERETNSEEIYLTQRITY+HI LNGRLDQNADLLSIVLQT
Sbjct: 1  MRFPFGIRTRPKSSSNLERETNSEEIYLTQRITYRHIALNGRLDQNADLLSIVLQT 56

[Close]
BLAST of CSPI06G10220 vs. NCBI nr
Match: gi|700191510|gb|KGN46714.1| (hypothetical protein Csa_6G126270 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 8.1e-21
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 1 

Query: 1  MRFPFGIRTRPKSSLNLERETNSEEIYLTQRITYQHITLNGRLDQNADLLSIVLQT 57
          MRFPFGIRTRPKSS NLERETNSEEIYLTQRITY+HI LNGRLDQNADLLSIVLQT
Sbjct: 1  MRFPFGIRTRPKSSSNLERETNSEEIYLTQRITYRHIALNGRLDQNADLLSIVLQT 56

The following BLAST results are available for this feature:
BLAST of CSPI06G10220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G10220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCZ0_CUCSA5.6e-2194.64Uncharacterized protein OS=Cucumis sativus GN=Csa_6G126270 PE=4 SV=1[more]
BLAST of CSPI06G10220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G10220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191510|gb|KGN46714.1|8.1e-2194.64hypothetical protein Csa_6G126270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G10220.1CSPI06G10220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G10220Csa6G126270Cucumber (Chinese Long) v2cpicuB314
CSPI06G10220CsaV3_6G012700Cucumber (Chinese Long) v3cpicucB364
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G10220Melon (DHL92) v3.6.1cpimedB436
CSPI06G10220Cucumber (Gy14) v2cgybcpiB288
CSPI06G10220Silver-seed gourdcarcpiB0384
CSPI06G10220Silver-seed gourdcarcpiB0890
CSPI06G10220Watermelon (97103) v2cpiwmbB469
CSPI06G10220Wax gourdcpiwgoB605
CSPI06G10220Cucumber (Gy14) v1cgycpiB156
CSPI06G10220Cucurbita maxima (Rimu)cmacpiB575
CSPI06G10220Cucurbita maxima (Rimu)cmacpiB629
CSPI06G10220Cucurbita moschata (Rifu)cmocpiB564
CSPI06G10220Cucurbita moschata (Rifu)cmocpiB621
CSPI06G10220Melon (DHL92) v3.5.1cpimeB438
CSPI06G10220Watermelon (Charleston Gray)cpiwcgB477
CSPI06G10220Watermelon (97103) v1cpiwmB548
CSPI06G10220Cucurbita pepo (Zucchini)cpecpiB291
CSPI06G10220Cucurbita pepo (Zucchini)cpecpiB763
CSPI06G10220Bottle gourd (USVL1VR-Ls)cpilsiB425
CSPI06G10220Bottle gourd (USVL1VR-Ls)cpilsiB426