Csa6G126270 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G126270
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 8716984 .. 8717282 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTTCCTTTTGGCATAAGAACCAGGCCAAAGTCCTCGTCAAACCTTGAACGTGAGACTAATTCTGAGGAAATCTACTTAACGTCTTGTAGTTCATCTACCTCTTACTTAGCTAAAAGTTCAGATTAAGTTCTAAAACTTGTCTGAAACTCTCTTATTTATACACTTTTTCAATGAGGATTTCGACGTCGGAATGATTACCTCTATCCAGACAACGAATCACATACCGACACATAGCTCTCAATGGACGGTTGGATCAGAATGCTGACTTACTAAGCATCGTCCTTCAGACGTAA

mRNA sequence

ATGAGGTTTCCTTTTGGCATAAGAACCAGGCCAAAGTCCTCGTCAAACCTTGAACGTGAGACTAATTCTGAGGAAATCTACTTAACACAACGAATCACATACCGACACATAGCTCTCAATGGACGGTTGGATCAGAATGCTGACTTACTAAGCATCGTCCTTCAGACGTAA

Coding sequence (CDS)

ATGAGGTTTCCTTTTGGCATAAGAACCAGGCCAAAGTCCTCGTCAAACCTTGAACGTGAGACTAATTCTGAGGAAATCTACTTAACACAACGAATCACATACCGACACATAGCTCTCAATGGACGGTTGGATCAGAATGCTGACTTACTAAGCATCGTCCTTCAGACGTAA

Protein sequence

MRFPFGIRTRPKSSSNLERETNSEEIYLTQRITYRHIALNGRLDQNADLLSIVLQT*
Homology
[Close]
BLAST of Csa6G126270 vs. TrEMBL
Match: A0A0A0KCZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G126270 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MRFPFGIRTRPKSSSNLERETNSEEIYLTQRITYRHIALNGRLDQNADLLSIVLQT 57
          MRFPFGIRTRPKSSSNLERETNSEEIYLTQRITYRHIALNGRLDQNADLLSIVLQT
Sbjct: 1  MRFPFGIRTRPKSSSNLERETNSEEIYLTQRITYRHIALNGRLDQNADLLSIVLQT 56

[Close]
BLAST of Csa6G126270 vs. NCBI nr
Match: gi|700191510|gb|KGN46714.1| (hypothetical protein Csa_6G126270 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MRFPFGIRTRPKSSSNLERETNSEEIYLTQRITYRHIALNGRLDQNADLLSIVLQT 57
          MRFPFGIRTRPKSSSNLERETNSEEIYLTQRITYRHIALNGRLDQNADLLSIVLQT
Sbjct: 1  MRFPFGIRTRPKSSSNLERETNSEEIYLTQRITYRHIALNGRLDQNADLLSIVLQT 56

The following BLAST results are available for this feature:
BLAST of Csa6G126270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCZ0_CUCSA1.3e-22100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G126270 PE=4 SV=1[more]
BLAST of Csa6G126270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191510|gb|KGN46714.1|1.9e-22100.00hypothetical protein Csa_6G126270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G126270.1Csa6G126270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G126270CSPI06G10220Wild cucumber (PI 183967)cpicuB314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G126270Cucumber (Gy14) v1cgycuB155
Csa6G126270Cucurbita maxima (Rimu)cmacuB568
Csa6G126270Cucurbita maxima (Rimu)cmacuB624
Csa6G126270Cucurbita moschata (Rifu)cmocuB559
Csa6G126270Cucurbita moschata (Rifu)cmocuB615
Csa6G126270Melon (DHL92) v3.5.1cumeB446
Csa6G126270Watermelon (Charleston Gray)cuwcgB458
Csa6G126270Watermelon (97103) v1cuwmB530
Csa6G126270Cucurbita pepo (Zucchini)cpecuB289
Csa6G126270Cucurbita pepo (Zucchini)cpecuB761
Csa6G126270Bottle gourd (USVL1VR-Ls)culsiB423
Csa6G126270Bottle gourd (USVL1VR-Ls)culsiB424
Csa6G126270Cucumber (Gy14) v2cgybcuB282
Csa6G126270Melon (DHL92) v3.6.1cumedB427
Csa6G126270Silver-seed gourdcarcuB0380
Csa6G126270Silver-seed gourdcarcuB0870
Csa6G126270Watermelon (97103) v2cuwmbB446
Csa6G126270Wax gourdcuwgoB600