Csa6G113590 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G113590
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 7876084 .. 7876344 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTGCTCTTCATCCCTTCACCACCACCACCATCTCCAAATTCTCTTTTCATCATCAAAATATGGATGTCAATTACGATGACGACAACGATTATTCACCTACCACGACTAAGTCCAGAAAAGCTCGAGAGTTCATTGTGAAGGATGCGCCTCAGGCAGTAGTGGAATGGTACATGATCGCTCTTAACAAGAAAGCTGCTTTCAAGAAATCCACAATCAAAGAGCTTGCATTAGGGCATTTATTGGCTATGGGATGA

mRNA sequence

ATGGCTTCTGCTCTTCATCCCTTCACCACCACCACCATCTCCAAATTCTCTTTTCATCATCAAAATATGGATGTCAATTACGATGACGACAACGATTATTCACCTACCACGACTAAGTCCAGAAAAGCTCGAGAGTTCATTGTGAAGGATGCGCCTCAGGCAGTAGTGGAATGGTACATGATCGCTCTTAACAAGAAAGCTGCTTTCAAGAAATCCACAATCAAAGAGCTTGCATTAGGGCATTTATTGGCTATGGGATGA

Coding sequence (CDS)

ATGGCTTCTGCTCTTCATCCCTTCACCACCACCACCATCTCCAAATTCTCTTTTCATCATCAAAATATGGATGTCAATTACGATGACGACAACGATTATTCACCTACCACGACTAAGTCCAGAAAAGCTCGAGAGTTCATTGTGAAGGATGCGCCTCAGGCAGTAGTGGAATGGTACATGATCGCTCTTAACAAGAAAGCTGCTTTCAAGAAATCCACAATCAAAGAGCTTGCATTAGGGCATTTATTGGCTATGGGATGA

Protein sequence

MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYMIALNKKAAFKKSTIKELALGHLLAMG*

Homology

[Close]

BLAST of Csa6G113590 vs. TrEMBL
Match: A0A0A0KDZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113590 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYM 60
          MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYM
Sbjct: 1  MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYM 60

Query: 61 IALNKKAAFKKSTIKELALGHLLAMG 87
          IALNKKAAFKKSTIKELALGHLLAMG
Sbjct: 61 IALNKKAAFKKSTIKELALGHLLAMG 86

[Close]

BLAST of Csa6G113590 vs. TrEMBL
Match: A0A0A0L0H9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642540 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 8.8e-34
Identity = 72/86 (83.72%), Postives = 79/86 (91.86%), Query Frame = 1


Query: 1  MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYM 60
          MAS+LHP TTTT SKFSFHHQNMD++ DDD+DYSPTTT+SRKAREF VKDAPQAVVEWY 
Sbjct: 1  MASSLHPTTTTTTSKFSFHHQNMDISDDDDDDYSPTTTRSRKAREFTVKDAPQAVVEWYT 60

Query: 61 IALNKKAAFKKSTIKELALGHLLAMG 87
          IAL+KKAA KKS +KELALGHLLAMG
Sbjct: 61 IALDKKAALKKSAVKELALGHLLAMG 86

[Close]

BLAST of Csa6G113590 vs. NCBI nr
Match: gi|700191418|gb|KGN46622.1| (hypothetical protein Csa_6G113590 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYM 60
          MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYM
Sbjct: 1  MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYM 60

Query: 61 IALNKKAAFKKSTIKELALGHLLAMG 87
          IALNKKAAFKKSTIKELALGHLLAMG
Sbjct: 61 IALNKKAAFKKSTIKELALGHLLAMG 86

[Close]

BLAST of Csa6G113590 vs. NCBI nr
Match: gi|778697838|ref|XP_004141405.2| (PREDICTED: uncharacterized protein LOC101209931 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-33
Identity = 72/86 (83.72%), Postives = 79/86 (91.86%), Query Frame = 1


Query: 1  MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYM 60
          MAS+LHP TTTT SKFSFHHQNMD++ DDD+DYSPTTT+SRKAREF VKDAPQAVVEWY 
Sbjct: 1  MASSLHPTTTTTTSKFSFHHQNMDISDDDDDDYSPTTTRSRKAREFTVKDAPQAVVEWYT 60

Query: 61 IALNKKAAFKKSTIKELALGHLLAMG 87
          IAL+KKAA KKS +KELALGHLLAMG
Sbjct: 61 IALDKKAALKKSAVKELALGHLLAMG 86

[Close]

BLAST of Csa6G113590 vs. NCBI nr
Match: gi|659105335|ref|XP_008453071.1| (PREDICTED: uncharacterized protein LOC103493895 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 6.3e-17
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 1


Query: 17 SFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYMIALNKKAAFKKSTIKE 76
          S  HQNMD++   D+DY P+    RKAREF V DAPQAVV+WYMIAL+KKAA KKST+K+
Sbjct: 10 SAFHQNMDIH---DDDYHPSINTKRKAREFTVMDAPQAVVDWYMIALDKKAAIKKSTVKD 69

Query: 77 LALGHLLAMG 87
          LALGHLL  G
Sbjct: 70 LALGHLLKTG 76

The following BLAST results are available for this feature:

BLAST of Csa6G113590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDZ5_CUCSA	1.2e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113590 PE=4 SV=1	[more]
A0A0A0L0H9_CUCSA	8.8e-34	83.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642540 PE=4 SV=1	[more]

BLAST of Csa6G113590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191418\|gb\|KGN46622.1\|	1.7e-41	100.00	hypothetical protein Csa_6G113590 [Cucumis sativus]	[more]
gi\|778697838\|ref\|XP_004141405.2\|	1.3e-33	83.72	PREDICTED: uncharacterized protein LOC101209931 [Cucumis sativus]	[more]
gi\|659105335\|ref\|XP_008453071.1\|	6.3e-17	67.14	PREDICTED: uncharacterized protein LOC103493895 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042967	acyl-carrier-protein biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008080	N-acetyltransferase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G113590.1	Csa6G113590.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G113590	CsGy6G009460	Cucumber (Gy14) v2	cgybcuB282

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G113590	Melon (DHL92) v3.5.1	cumeB425
Csa6G113590	Melon (DHL92) v3.5.1	cumeB461
Csa6G113590	Watermelon (Charleston Gray)	cuwcgB443
Csa6G113590	Watermelon (Charleston Gray)	cuwcgB457
Csa6G113590	Watermelon (97103) v1	cuwmB516
Csa6G113590	Cucurbita pepo (Zucchini)	cpecuB250
Csa6G113590	Cucurbita pepo (Zucchini)	cpecuB285
Csa6G113590	Cucurbita pepo (Zucchini)	cpecuB292
Csa6G113590	Cucurbita pepo (Zucchini)	cpecuB689
Csa6G113590	Bottle gourd (USVL1VR-Ls)	culsiB415
Csa6G113590	Bottle gourd (USVL1VR-Ls)	culsiB428
Csa6G113590	Cucumber (Gy14) v2	cgybcuB148
Csa6G113590	Cucumber (Gy14) v2	cgybcuB321
Csa6G113590	Melon (DHL92) v3.6.1	cumedB405
Csa6G113590	Melon (DHL92) v3.6.1	cumedB442
Csa6G113590	Silver-seed gourd	carcuB0379
Csa6G113590	Silver-seed gourd	carcuB0227
Csa6G113590	Silver-seed gourd	carcuB0378
Csa6G113590	Silver-seed gourd	carcuB1079
Csa6G113590	Watermelon (97103) v2	cuwmbB432
Csa6G113590	Watermelon (97103) v2	cuwmbB447
Csa6G113590	Wax gourd	cuwgoB561
Csa6G113590	Wax gourd	cuwgoB608
Csa6G113590	Cucumber (Chinese Long) v2	cucuB126
Csa6G113590	Cucumber (Chinese Long) v2	cucuB171
Csa6G113590	Cucumber (Gy14) v1	cgycuB110
Csa6G113590	Cucumber (Gy14) v1	cgycuB155
Csa6G113590	Cucurbita maxima (Rimu)	cmacuB141
Csa6G113590	Cucurbita maxima (Rimu)	cmacuB521
Csa6G113590	Cucurbita maxima (Rimu)	cmacuB555
Csa6G113590	Cucurbita maxima (Rimu)	cmacuB566
Csa6G113590	Cucurbita moschata (Rifu)	cmocuB130
Csa6G113590	Cucurbita moschata (Rifu)	cmocuB513
Csa6G113590	Cucurbita moschata (Rifu)	cmocuB546
Csa6G113590	Cucurbita moschata (Rifu)	cmocuB557