Csa6G113590.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G113590.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 7876084 .. 7876344 (-)
Sequence length261
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTGCTCTTCATCCCTTCACCACCACCACCATCTCCAAATTCTCTTTTCATCATCAAAATATGGATGTCAATTACGATGACGACAACGATTATTCACCTACCACGACTAAGTCCAGAAAAGCTCGAGAGTTCATTGTGAAGGATGCGCCTCAGGCAGTAGTGGAATGGTACATGATCGCTCTTAACAAGAAAGCTGCTTTCAAGAAATCCACAATCAAAGAGCTTGCATTAGGGCATTTATTGGCTATGGGATGA

mRNA sequence

ATGGCTTCTGCTCTTCATCCCTTCACCACCACCACCATCTCCAAATTCTCTTTTCATCATCAAAATATGGATGTCAATTACGATGACGACAACGATTATTCACCTACCACGACTAAGTCCAGAAAAGCTCGAGAGTTCATTGTGAAGGATGCGCCTCAGGCAGTAGTGGAATGGTACATGATCGCTCTTAACAAGAAAGCTGCTTTCAAGAAATCCACAATCAAAGAGCTTGCATTAGGGCATTTATTGGCTATGGGATGA

Coding sequence (CDS)

ATGGCTTCTGCTCTTCATCCCTTCACCACCACCACCATCTCCAAATTCTCTTTTCATCATCAAAATATGGATGTCAATTACGATGACGACAACGATTATTCACCTACCACGACTAAGTCCAGAAAAGCTCGAGAGTTCATTGTGAAGGATGCGCCTCAGGCAGTAGTGGAATGGTACATGATCGCTCTTAACAAGAAAGCTGCTTTCAAGAAATCCACAATCAAAGAGCTTGCATTAGGGCATTTATTGGCTATGGGATGA

Protein sequence

MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYMIALNKKAAFKKSTIKELALGHLLAMG*
Homology
[Close]
BLAST of Csa6G113590.1 vs. TrEMBL
Match: A0A0A0KDZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113590 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1  MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYM 60
          MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYM
Sbjct: 1  MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYM 60

Query: 61 IALNKKAAFKKSTIKELALGHLLAMG 87
          IALNKKAAFKKSTIKELALGHLLAMG
Sbjct: 61 IALNKKAAFKKSTIKELALGHLLAMG 86

[Close]
BLAST of Csa6G113590.1 vs. TrEMBL
Match: A0A0A0L0H9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642540 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 8.8e-34
Identity = 72/86 (83.72%), Postives = 79/86 (91.86%), Query Frame = 1 

Query: 1  MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYM 60
          MAS+LHP TTTT SKFSFHHQNMD++ DDD+DYSPTTT+SRKAREF VKDAPQAVVEWY 
Sbjct: 1  MASSLHPTTTTTTSKFSFHHQNMDISDDDDDDYSPTTTRSRKAREFTVKDAPQAVVEWYT 60

Query: 61 IALNKKAAFKKSTIKELALGHLLAMG 87
          IAL+KKAA KKS +KELALGHLLAMG
Sbjct: 61 IALDKKAALKKSAVKELALGHLLAMG 86

[Close]
BLAST of Csa6G113590.1 vs. NCBI nr
Match: gi|700191418|gb|KGN46622.1| (hypothetical protein Csa_6G113590 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1  MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYM 60
          MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYM
Sbjct: 1  MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYM 60

Query: 61 IALNKKAAFKKSTIKELALGHLLAMG 87
          IALNKKAAFKKSTIKELALGHLLAMG
Sbjct: 61 IALNKKAAFKKSTIKELALGHLLAMG 86

[Close]
BLAST of Csa6G113590.1 vs. NCBI nr
Match: gi|778697838|ref|XP_004141405.2| (PREDICTED: uncharacterized protein LOC101209931 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-33
Identity = 72/86 (83.72%), Postives = 79/86 (91.86%), Query Frame = 1 

Query: 1  MASALHPFTTTTISKFSFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYM 60
          MAS+LHP TTTT SKFSFHHQNMD++ DDD+DYSPTTT+SRKAREF VKDAPQAVVEWY 
Sbjct: 1  MASSLHPTTTTTTSKFSFHHQNMDISDDDDDDYSPTTTRSRKAREFTVKDAPQAVVEWYT 60

Query: 61 IALNKKAAFKKSTIKELALGHLLAMG 87
          IAL+KKAA KKS +KELALGHLLAMG
Sbjct: 61 IALDKKAALKKSAVKELALGHLLAMG 86

[Close]
BLAST of Csa6G113590.1 vs. NCBI nr
Match: gi|659105335|ref|XP_008453071.1| (PREDICTED: uncharacterized protein LOC103493895 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 6.3e-17
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 1 

Query: 17 SFHHQNMDVNYDDDNDYSPTTTKSRKAREFIVKDAPQAVVEWYMIALNKKAAFKKSTIKE 76
          S  HQNMD++   D+DY P+    RKAREF V DAPQAVV+WYMIAL+KKAA KKST+K+
Sbjct: 10 SAFHQNMDIH---DDDYHPSINTKRKAREFTVMDAPQAVVDWYMIALDKKAAIKKSTVKD 69

Query: 77 LALGHLLAMG 87
          LALGHLL  G
Sbjct: 70 LALGHLLKTG 76

The following BLAST results are available for this feature:
BLAST of Csa6G113590.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDZ5_CUCSA1.2e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G113590 PE=4 SV=1[more]
A0A0A0L0H9_CUCSA8.8e-3483.72Uncharacterized protein OS=Cucumis sativus GN=Csa_4G642540 PE=4 SV=1[more]
BLAST of Csa6G113590.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191418|gb|KGN46622.1|1.7e-41100.00hypothetical protein Csa_6G113590 [Cucumis sativus][more]
gi|778697838|ref|XP_004141405.2|1.3e-3383.72PREDICTED: uncharacterized protein LOC101209931 [Cucumis sativus][more]
gi|659105335|ref|XP_008453071.1|6.3e-1767.14PREDICTED: uncharacterized protein LOC103493895 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042967 acyl-carrier-protein biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008080 N-acetyltransferase activity
molecular_function GO:0008270 zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G113590Csa6G113590gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G113590.1Csa6G113590.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G113590.1.cds1Csa6G113590.1.cds1CDS