Csa6G014760 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGCTTTTATTAATTTTCAGGGAAGCACTGTTAGATTCTTATCTTTCTAGATATTCAGTTATTATTGTTGATGAAGCTCATGAAAGAACTGTTGATACTGATGTATTGCTAGGGTATTTGAAAAGAGTGCAGAAAGCAAGATCTAAATCTTTAACTGAATCTTCTAATGATCTGAACACAAATGATAATGGCTTGACGTTAGAAAATAGAAATAGCAGTGAATATGCCTTTTCCTTAAAGAGATGTCAAGGAAGGAAACTACCTCCCCTGAAGCTAATTATCATGTCAGCCAGCTTAAATGCACCCCTTTTCTCTGAGTTTTCTGGTGGAGCAAAGGTGTTCCATGTCCATGGGCGTCAGTATCCTGTAGCTATATTTTATACCCGCCAGCCCATACTAGATTACATAGAGGGTACTCTTATTACTATATTTTAG ATGTCGCTTTTATTAATTTTCAGGGAAGCACTGTTAGATTCTTATCTTTCTAGATATTCAGTTATTATTGTTGATGAAGCTCATGAAAGAACTGTTGATACTGATGTATTGCTAGGGTATTTGAAAAGAGTGCAGAAAGCAAGATCTAAATCTTTAACTGAATCTTCTAATGATCTGAACACAAATGATAATGGCTTGACGTTAGAAAATAGAAATAGCAGTGAATATGCCTTTTCCTTAAAGAGATGTCAAGGAAGGAAACTACCTCCCCTGAAGCTAATTATCATGTCAGCCAGCTTAAATGCACCCCTTTTCTCTGAGTTTTCTGGTGGAGCAAAGGTGTTCCATGTCCATGGGCGTCAGTATCCTGTAGCTATATTTTATACCCGCCAGCCCATACTAGATTACATAGAGGGTACTCTTATTACTATATTTTAG ATGTCGCTTTTATTAATTTTCAGGGAAGCACTGTTAGATTCTTATCTTTCTAGATATTCAGTTATTATTGTTGATGAAGCTCATGAAAGAACTGTTGATACTGATGTATTGCTAGGGTATTTGAAAAGAGTGCAGAAAGCAAGATCTAAATCTTTAACTGAATCTTCTAATGATCTGAACACAAATGATAATGGCTTGACGTTAGAAAATAGAAATAGCAGTGAATATGCCTTTTCCTTAAAGAGATGTCAAGGAAGGAAACTACCTCCCCTGAAGCTAATTATCATGTCAGCCAGCTTAAATGCACCCCTTTTCTCTGAGTTTTCTGGTGGAGCAAAGGTGTTCCATGTCCATGGGCGTCAGTATCCTGTAGCTATATTTTATACCCGCCAGCCCATACTAGATTACATAGAGGGTACTCTTATTACTATATTTTAG MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDNGLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPVAIFYTRQPILDYIEGTLITIF*
BLAST of Csa6G014760 vs. Swiss-Prot
Match: PRP22_ARATH (Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Arabidopsis thaliana GN=RID1 PE=1 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 8.6e-35 Identity = 80/142 (56.34%), Postives = 98/142 (69.01%), Query Frame = 1
BLAST of Csa6G014760 vs. Swiss-Prot
Match: YK16_SCHPO (Putative ATP-dependent RNA helicase PB1A10.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB1A10.06c PE=3 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 9.3e-13 Identity = 49/138 (35.51%), Postives = 69/138 (50.00%), Query Frame = 1
BLAST of Csa6G014760 vs. Swiss-Prot
Match: DEAH9_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 OS=Arabidopsis thaliana GN=At4g18465 PE=3 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 6.7e-11 Identity = 45/140 (32.14%), Postives = 67/140 (47.86%), Query Frame = 1
BLAST of Csa6G014760 vs. Swiss-Prot
Match: DHR1_YEAST (Probable ATP-dependent RNA helicase DHR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ECM16 PE=1 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 8.7e-11 Identity = 47/138 (34.06%), Postives = 65/138 (47.10%), Query Frame = 1
BLAST of Csa6G014760 vs. Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prh1 PE=3 SV=2) HSP 1 Score: 67.4 bits (163), Expect = 1.5e-10 Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1
HSP 2 Score: 50.8 bits (120), Expect = 1.4e-05 Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 1
BLAST of Csa6G014760 vs. TrEMBL
Match: A0A0A0KDJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014760 PE=4 SV=1) HSP 1 Score: 285.0 bits (728), Expect = 5.0e-74 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1
BLAST of Csa6G014760 vs. TrEMBL
Match: A0A0A0L7N3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077650 PE=4 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 2.4e-44 Identity = 99/141 (70.21%), Postives = 114/141 (80.85%), Query Frame = 1
BLAST of Csa6G014760 vs. TrEMBL
Match: A0A0J8F075_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g136350 PE=4 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 1.5e-38 Identity = 86/141 (60.99%), Postives = 105/141 (74.47%), Query Frame = 1
BLAST of Csa6G014760 vs. TrEMBL
Match: A0A0J8C5S9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g136350 PE=4 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 1.5e-38 Identity = 86/141 (60.99%), Postives = 105/141 (74.47%), Query Frame = 1
BLAST of Csa6G014760 vs. TrEMBL
Match: M1BY31_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021559 PE=4 SV=1) HSP 1 Score: 164.9 bits (416), Expect = 7.6e-38 Identity = 90/142 (63.38%), Postives = 105/142 (73.94%), Query Frame = 1
BLAST of Csa6G014760 vs. TAIR10
Match: AT1G26370.1 (AT1G26370.1 RNA helicase family protein) HSP 1 Score: 147.9 bits (372), Expect = 4.9e-36 Identity = 80/142 (56.34%), Postives = 98/142 (69.01%), Query Frame = 1
BLAST of Csa6G014760 vs. TAIR10
Match: AT1G33390.1 (AT1G33390.1 RNA helicase family protein) HSP 1 Score: 74.3 bits (181), Expect = 6.8e-14 Identity = 54/141 (38.30%), Postives = 75/141 (53.19%), Query Frame = 1
BLAST of Csa6G014760 vs. TAIR10
Match: AT4G18465.1 (AT4G18465.1 RNA helicase family protein) HSP 1 Score: 68.6 bits (166), Expect = 3.7e-12 Identity = 45/140 (32.14%), Postives = 67/140 (47.86%), Query Frame = 1
BLAST of Csa6G014760 vs. TAIR10
Match: AT2G47250.1 (AT2G47250.1 RNA helicase family protein) HSP 1 Score: 61.6 bits (148), Expect = 4.6e-10 Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1
HSP 2 Score: 55.1 bits (131), Expect = 4.3e-08 Identity = 33/72 (45.83%), Postives = 37/72 (51.39%), Query Frame = 1
BLAST of Csa6G014760 vs. TAIR10
Match: AT3G62310.1 (AT3G62310.1 RNA helicase family protein) HSP 1 Score: 59.3 bits (142), Expect = 2.3e-09 Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 1
HSP 2 Score: 55.5 bits (132), Expect = 3.3e-08 Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 1
BLAST of Csa6G014760 vs. NCBI nr
Match: gi|700190652|gb|KGN45856.1| (hypothetical protein Csa_6G014760 [Cucumis sativus]) HSP 1 Score: 285.0 bits (728), Expect = 7.2e-74 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1
BLAST of Csa6G014760 vs. NCBI nr
Match: gi|778721976|ref|XP_011658383.1| (PREDICTED: probable ATP-dependent RNA helicase prh1 [Cucumis sativus]) HSP 1 Score: 274.6 bits (701), Expect = 9.8e-71 Identity = 138/141 (97.87%), Postives = 140/141 (99.29%), Query Frame = 1
BLAST of Csa6G014760 vs. NCBI nr
Match: gi|659126891|ref|XP_008463416.1| (PREDICTED: putative ATP-dependent RNA helicase DHX33 [Cucumis melo]) HSP 1 Score: 192.6 bits (488), Expect = 4.9e-46 Identity = 99/141 (70.21%), Postives = 115/141 (81.56%), Query Frame = 1
BLAST of Csa6G014760 vs. NCBI nr
Match: gi|449470445|ref|XP_004152927.1| (PREDICTED: putative ATP-dependent RNA helicase DHX33 [Cucumis sativus]) HSP 1 Score: 186.4 bits (472), Expect = 3.5e-44 Identity = 99/141 (70.21%), Postives = 114/141 (80.85%), Query Frame = 1
BLAST of Csa6G014760 vs. NCBI nr
Match: gi|700200998|gb|KGN56131.1| (hypothetical protein Csa_3G077650 [Cucumis sativus]) HSP 1 Score: 186.4 bits (472), Expect = 3.5e-44 Identity = 99/141 (70.21%), Postives = 114/141 (80.85%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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