CSPI06G02350 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G02350
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionATP-dependent RNA helicase, putative
LocationChr6 : 1749298 .. 1749735 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCTTTTATTAATTTTCAGGGAAGCACTGTTAGATTCTTATCTTTCTAGATATTCAGTTATTATTGTTGATGAAGCTCATGAAAGAACTGTTGATACTGATGTATTGCTAGGGTATTTGAAAAGAGTGCAGAAAGCAAGATCTAAATCTTTAACTGAATCTTCTAATGATCTGAACACAAATGATAATGGCTTGACGTTAGAAAATAGAAATAGCAGTGAATATGCCTCTTCCTTAAAGAGATGTCAAGGAAGGAAACTACCTCCCCTGAAGTTAATTATCATGTCAGCCAGCTTAAATGCACCCCTTTTCTCTGAGTTTTCTGGTGGAGCAAAGGTGTTCCATGTCCATGGGCGTCAGTATCCTGTAGCTATATTTTATACCCGCCAGCCCATACTAGATTACATAGAGGGTACTCTTATTACTATATTTTAG

mRNA sequence

ATGTCGCTTTTATTAATTTTCAGGGAAGCACTGTTAGATTCTTATCTTTCTAGATATTCAGTTATTATTGTTGATGAAGCTCATGAAAGAACTGTTGATACTGATGTATTGCTAGGGTATTTGAAAAGAGTGCAGAAAGCAAGATCTAAATCTTTAACTGAATCTTCTAATGATCTGAACACAAATGATAATGGCTTGACGTTAGAAAATAGAAATAGCAGTGAATATGCCTCTTCCTTAAAGAGATGTCAAGGAAGGAAACTACCTCCCCTGAAGTTAATTATCATGTCAGCCAGCTTAAATGCACCCCTTTTCTCTGAGTTTTCTGGTGGAGCAAAGGTGTTCCATGTCCATGGGCGTCAGTATCCTGTAGCTATATTTTATACCCGCCAGCCCATACTAGATTACATAGAGGGTACTCTTATTACTATATTTTAG

Coding sequence (CDS)

ATGTCGCTTTTATTAATTTTCAGGGAAGCACTGTTAGATTCTTATCTTTCTAGATATTCAGTTATTATTGTTGATGAAGCTCATGAAAGAACTGTTGATACTGATGTATTGCTAGGGTATTTGAAAAGAGTGCAGAAAGCAAGATCTAAATCTTTAACTGAATCTTCTAATGATCTGAACACAAATGATAATGGCTTGACGTTAGAAAATAGAAATAGCAGTGAATATGCCTCTTCCTTAAAGAGATGTCAAGGAAGGAAACTACCTCCCCTGAAGTTAATTATCATGTCAGCCAGCTTAAATGCACCCCTTTTCTCTGAGTTTTCTGGTGGAGCAAAGGTGTTCCATGTCCATGGGCGTCAGTATCCTGTAGCTATATTTTATACCCGCCAGCCCATACTAGATTACATAGAGGGTACTCTTATTACTATATTTTAG
Homology
[Close]
BLAST of CSPI06G02350 vs. Swiss-Prot
Match: PRP22_ARATH (Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Arabidopsis thaliana GN=RID1 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 9.5e-34
Identity = 80/142 (56.34%), Postives = 100/142 (70.42%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD +LSRYSVIIVDEAH+R+V TDVLL  LK++Q+ RS+ ++E +   N    
Sbjct: 142 LLLREALLDPHLSRYSVIIVDEAHDRSVHTDVLLALLKKIQRTRSQPVSEKTEFGNVASQ 201

Query: 65  -GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYP 124
              T  + N  +    LK  QGRKL PLKLIIMSASL+A +FSE+ GGAK  HV GRQ+P
Sbjct: 202 VQTTTRDANGPQQNGVLKGYQGRKLSPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFP 261

Query: 125 VAIFYTRQPILDYIEGTLITIF 146
           V I YT  P  DY++ TL+TIF
Sbjct: 262 VDILYTVHPESDYVDATLVTIF 283

[Close]
BLAST of CSPI06G02350 vs. Swiss-Prot
Match: YK16_SCHPO (Putative ATP-dependent RNA helicase PB1A10.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB1A10.06c PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.5e-12
Identity = 49/138 (35.51%), Postives = 71/138 (51.45%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ RE   D  L+ YS +IVDEAHER+V+TD+LLG L R+ + R         +++ +D 
Sbjct: 502 ILLRELSSDFLLTAYSAVIVDEAHERSVNTDILLGLLSRIVRLR--------REMSKSD- 561

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSE----FSGGAKVFHVHGR 124
                                +K+ PLKLIIMSA+L    FSE    FS    +  +  R
Sbjct: 562 ---------------------QKVKPLKLIIMSATLRVTDFSENKLLFSVPPPIIKIDAR 609

Query: 125 QYPVAIFYTRQPILDYIE 139
           QYPV+I + R    DY++
Sbjct: 622 QYPVSIHFNRTTKPDYLQ 609

[Close]
BLAST of CSPI06G02350 vs. Swiss-Prot
Match: DEAHD_ARATH (ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana GN=FAS4 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.0e-12
Identity = 52/141 (36.88%), Postives = 74/141 (52.48%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ RE   D  L RYSVII+DEAHER+++TD+L+G L RV K R +   E    L +   
Sbjct: 347 ILLREIQNDFLLRRYSVIILDEAHERSLNTDILIGMLTRVIKIRQEYYEEQQKSLQSG-- 406

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVF-------HV 124
                        +    CQ   + PLKLI+MSA+L      +F  G ++F        V
Sbjct: 407 ------------GTVTSECQ---ITPLKLILMSATLRV---EDFVSGKRLFPNIPPLIEV 466

Query: 125 HGRQYPVAIFYTRQ-PILDYI 138
             RQYPV I ++++  I+DYI
Sbjct: 467 PTRQYPVTIHFSKKTEIVDYI 467

[Close]
BLAST of CSPI06G02350 vs. Swiss-Prot
Match: DHX33_MOUSE (Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 45/141 (31.91%), Postives = 67/141 (47.52%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ REA+ DS L +YS +I+DEAHERT+ TDVL G +K  QK R +        L     
Sbjct: 165 MLLREAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKEL---GKLPLKVIVM 224

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
             T++    S+Y +                                 A V ++ GRQ+P+
Sbjct: 225 SATMDVDLFSQYFNR--------------------------------APVLYLEGRQHPI 270

Query: 125 AIFYTRQPILDYIEGTLITIF 146
            IFYT+QP  DY+   L+++F
Sbjct: 285 QIFYTKQPQQDYLHAALVSVF 270

[Close]
BLAST of CSPI06G02350 vs. Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prh1 PE=3 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1 

Query: 86  RKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPVAIFYTRQPILDYIEGTLITIF 145
           +K P L++IIMSA+LNA  FSEF  GA++ ++ GRQYPV I YT  P  DY++  L TIF
Sbjct: 237 KKRPALRVIIMSATLNAERFSEFFDGAEICYISGRQYPVQIHYTYTPEPDYLDACLRTIF 296

[Close]
BLAST of CSPI06G02350 vs. TrEMBL
Match: A0A0A0KDJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014760 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.3e-71
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 1 

Query: 1   MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLN 60
           MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLN
Sbjct: 1   MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLN 60

Query: 61  TNDNGLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGR 120
           TNDNGLTLENRNSSEYA SLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGR
Sbjct: 61  TNDNGLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGR 120

Query: 121 QYPVAIFYTRQPILDYIEGTLITIF 146
           QYPVAIFYTRQPILDYIEGTLITIF
Sbjct: 121 QYPVAIFYTRQPILDYIEGTLITIF 145

[Close]
BLAST of CSPI06G02350 vs. TrEMBL
Match: A0A0A0L7N3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077650 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43
Identity = 100/141 (70.92%), Postives = 115/141 (81.56%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLSRYSVIIVDEAHERTV+TDVLLG+LK+VQK RS+SL +S N  N N N
Sbjct: 134 LLLREALLDPYLSRYSVIIVDEAHERTVNTDVLLGFLKKVQKTRSRSLNDSFNTENMNTN 193

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           G  LE  N+ +Y SSL++ +GRKL PLKLIIMSASL+A LFSE+ GGAK F V GRQYPV
Sbjct: 194 G-KLEKGNNGKYVSSLRQHRGRKLHPLKLIIMSASLDARLFSEYFGGAKAFRVQGRQYPV 253

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AI YTR+ +LDY E TLITIF
Sbjct: 254 AISYTRKHVLDYTEATLITIF 273

[Close]
BLAST of CSPI06G02350 vs. TrEMBL
Match: A0A0J8C5S9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g136350 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.8e-38
Identity = 87/141 (61.70%), Postives = 106/141 (75.18%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLS+YSVI+VDEAHERTV TDVLLG LK VQKARS++  E  + +  N N
Sbjct: 15  LLLREALLDPYLSKYSVIVVDEAHERTVHTDVLLGLLKNVQKARSQTANELVDQIKIN-N 74

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
              LE  N ++ AS LK+CQG KLPPL+LIIMSASL+A +FSE+ GGAK  HV GRQ+PV
Sbjct: 75  DTKLEKDNGTQMASPLKQCQGAKLPPLRLIIMSASLDARIFSEYFGGAKAVHVQGRQFPV 134

Query: 125 AIFYTRQPILDYIEGTLITIF 146
            IFYT     DY+E  +++IF
Sbjct: 135 DIFYTLHAETDYVEAAMVSIF 154

[Close]
BLAST of CSPI06G02350 vs. TrEMBL
Match: A0A0J8F075_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g136350 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.8e-38
Identity = 87/141 (61.70%), Postives = 106/141 (75.18%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLS+YSVI+VDEAHERTV TDVLLG LK VQKARS++  E  + +  N N
Sbjct: 134 LLLREALLDPYLSKYSVIVVDEAHERTVHTDVLLGLLKNVQKARSQTANELVDQIKIN-N 193

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
              LE  N ++ AS LK+CQG KLPPL+LIIMSASL+A +FSE+ GGAK  HV GRQ+PV
Sbjct: 194 DTKLEKDNGTQMASPLKQCQGAKLPPLRLIIMSASLDARIFSEYFGGAKAVHVQGRQFPV 253

Query: 125 AIFYTRQPILDYIEGTLITIF 146
            IFYT     DY+E  +++IF
Sbjct: 254 DIFYTLHAETDYVEAAMVSIF 273

[Close]
BLAST of CSPI06G02350 vs. TrEMBL
Match: V4THT1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030826mg PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.4e-37
Identity = 90/142 (63.38%), Postives = 104/142 (73.24%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLSRYS IIVDEAHERTV TDVLLG LK+VQ ARSKS    SN  N N+N
Sbjct: 142 LLLREALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNEN 201

Query: 65  G-LTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYP 124
             + L+  N +   ++LK+CQGRK  PLKLIIMSASL+A  FSE+ G AK  HV GRQ+P
Sbjct: 202 SDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFP 261

Query: 125 VAIFYTRQPILDYIEGTLITIF 146
           V I YT  P  DY++ TLITIF
Sbjct: 262 VEILYTLYPEPDYLDATLITIF 283

[Close]
BLAST of CSPI06G02350 vs. TAIR10
Match: AT1G26370.1 (AT1G26370.1 RNA helicase family protein)

HSP 1 Score: 144.4 bits (363), Expect = 5.4e-35
Identity = 80/142 (56.34%), Postives = 100/142 (70.42%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD +LSRYSVIIVDEAH+R+V TDVLL  LK++Q+ RS+ ++E +   N    
Sbjct: 142 LLLREALLDPHLSRYSVIIVDEAHDRSVHTDVLLALLKKIQRTRSQPVSEKTEFGNVASQ 201

Query: 65  -GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYP 124
              T  + N  +    LK  QGRKL PLKLIIMSASL+A +FSE+ GGAK  HV GRQ+P
Sbjct: 202 VQTTTRDANGPQQNGVLKGYQGRKLSPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFP 261

Query: 125 VAIFYTRQPILDYIEGTLITIF 146
           V I YT  P  DY++ TL+TIF
Sbjct: 262 VDILYTVHPESDYVDATLVTIF 283

[Close]
BLAST of CSPI06G02350 vs. TAIR10
Match: AT1G33390.1 (AT1G33390.1 RNA helicase family protein)

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-13
Identity = 52/141 (36.88%), Postives = 74/141 (52.48%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ RE   D  L RYSVII+DEAHER+++TD+L+G L RV K R +   E    L +   
Sbjct: 347 ILLREIQNDFLLRRYSVIILDEAHERSLNTDILIGMLTRVIKIRQEYYEEQQKSLQSG-- 406

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVF-------HV 124
                        +    CQ   + PLKLI+MSA+L      +F  G ++F        V
Sbjct: 407 ------------GTVTSECQ---ITPLKLILMSATLRV---EDFVSGKRLFPNIPPLIEV 466

Query: 125 HGRQYPVAIFYTRQ-PILDYI 138
             RQYPV I ++++  I+DYI
Sbjct: 467 PTRQYPVTIHFSKKTEIVDYI 467

[Close]
BLAST of CSPI06G02350 vs. TAIR10
Match: AT4G18465.1 (AT4G18465.1 RNA helicase family protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-11
Identity = 45/140 (32.14%), Postives = 70/140 (50.00%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ RE + D  L++YSVI++DEAHER++ TD+LLG LK++Q+ R         +L    +
Sbjct: 150 VLIREMMEDPLLTKYSVIMIDEAHERSISTDILLGLLKKIQRRRP--------ELRLIIS 209

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
             T+E +  S + +S K+   R  P         S   P          +  V GR + V
Sbjct: 210 SATIEAKTMSNFFNSSKK---RHAP-------EGSTPGPKLE-----PAILSVEGRGFSV 266

Query: 125 AIFYTRQPILDYIEGTLITI 145
            I Y  +P+ DYI   + TI
Sbjct: 270 KIHYVEEPVSDYIRSVVSTI 266

[Close]
BLAST of CSPI06G02350 vs. TAIR10
Match: AT2G47250.1 (AT2G47250.1 RNA helicase family protein)

HSP 1 Score: 60.8 bits (146), Expect = 7.8e-10
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1 

Query: 86  RKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPVAIFYTRQPILDYIEGTLITI 145
           R  P LKL++MSA+L A  F E+  GA +  V GR +PV IFYT++P  DY+E  + T+
Sbjct: 212 RNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTV 270

[Close]
BLAST of CSPI06G02350 vs. TAIR10
Match: AT3G62310.1 (AT3G62310.1 RNA helicase family protein)

HSP 1 Score: 58.9 bits (141), Expect = 3.0e-09
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 1 

Query: 89  PPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPVAIFYTRQPILDYIEGTLITI 145
           P LKL++MSA+L A  F ++  GA +  V GR +PV IFYT++P  DY+E  + T+
Sbjct: 211 PDLKLVVMSATLEAEKFQDYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTV 266

[Close]
BLAST of CSPI06G02350 vs. NCBI nr
Match: gi|700190652|gb|KGN45856.1| (hypothetical protein Csa_6G014760 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 3.4e-71
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 1 

Query: 1   MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLN 60
           MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLN
Sbjct: 1   MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLN 60

Query: 61  TNDNGLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGR 120
           TNDNGLTLENRNSSEYA SLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGR
Sbjct: 61  TNDNGLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGR 120

Query: 121 QYPVAIFYTRQPILDYIEGTLITIF 146
           QYPVAIFYTRQPILDYIEGTLITIF
Sbjct: 121 QYPVAIFYTRQPILDYIEGTLITIF 145

[Close]
BLAST of CSPI06G02350 vs. NCBI nr
Match: gi|778721976|ref|XP_011658383.1| (PREDICTED: probable ATP-dependent RNA helicase prh1 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 2.0e-68
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ REALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN
Sbjct: 145 ILLREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 204

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           GLTLENRNSSEYA SLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV
Sbjct: 205 GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 264

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AIFYTRQPILDYIEGTLITIF
Sbjct: 265 AIFYTRQPILDYIEGTLITIF 285

[Close]
BLAST of CSPI06G02350 vs. NCBI nr
Match: gi|659126891|ref|XP_008463416.1| (PREDICTED: putative ATP-dependent RNA helicase DHX33 [Cucumis melo])

HSP 1 Score: 190.3 bits (482), Expect = 2.4e-45
Identity = 100/141 (70.92%), Postives = 116/141 (82.27%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLSRYSVIIVDEAHERTV TDVLLG+LK+VQK RS+SL +S N  N N N
Sbjct: 134 LLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGFLKKVQKTRSRSLNDSFNTENVNTN 193

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           GL LE  N+ +Y SSL++ +GRKLPPLKLIIMSASL+A LFSE+ GGA+ F + GRQYPV
Sbjct: 194 GLVLEKGNNGKYVSSLRQHRGRKLPPLKLIIMSASLDARLFSEYFGGARAFRIPGRQYPV 253

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AI YTR+ +LDY E TLITIF
Sbjct: 254 AISYTRKHVLDYSETTLITIF 274

[Close]
BLAST of CSPI06G02350 vs. NCBI nr
Match: gi|449470445|ref|XP_004152927.1| (PREDICTED: putative ATP-dependent RNA helicase DHX33 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-43
Identity = 100/141 (70.92%), Postives = 115/141 (81.56%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLSRYSVIIVDEAHERTV+TDVLLG+LK+VQK RS+SL +S N  N N N
Sbjct: 134 LLLREALLDPYLSRYSVIIVDEAHERTVNTDVLLGFLKKVQKTRSRSLNDSFNTENMNTN 193

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           G  LE  N+ +Y SSL++ +GRKL PLKLIIMSASL+A LFSE+ GGAK F V GRQYPV
Sbjct: 194 G-KLEKGNNGKYVSSLRQHRGRKLHPLKLIIMSASLDARLFSEYFGGAKAFRVQGRQYPV 253

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AI YTR+ +LDY E TLITIF
Sbjct: 254 AISYTRKHVLDYTEATLITIF 273

[Close]
BLAST of CSPI06G02350 vs. NCBI nr
Match: gi|700200998|gb|KGN56131.1| (hypothetical protein Csa_3G077650 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-43
Identity = 100/141 (70.92%), Postives = 115/141 (81.56%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLSRYSVIIVDEAHERTV+TDVLLG+LK+VQK RS+SL +S N  N N N
Sbjct: 134 LLLREALLDPYLSRYSVIIVDEAHERTVNTDVLLGFLKKVQKTRSRSLNDSFNTENMNTN 193

Query: 65  GLTLENRNSSEYASSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           G  LE  N+ +Y SSL++ +GRKL PLKLIIMSASL+A LFSE+ GGAK F V GRQYPV
Sbjct: 194 G-KLEKGNNGKYVSSLRQHRGRKLHPLKLIIMSASLDARLFSEYFGGAKAFRVQGRQYPV 253

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AI YTR+ +LDY E TLITIF
Sbjct: 254 AISYTRKHVLDYTEATLITIF 273

The following BLAST results are available for this feature:
BLAST of CSPI06G02350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PRP22_ARATH9.5e-3456.34Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Arabidopsis thalia... [more]
YK16_SCHPO3.5e-1235.51Putative ATP-dependent RNA helicase PB1A10.06c OS=Schizosaccharomyces pombe (str... [more]
DEAHD_ARATH6.0e-1236.88ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana GN=FAS4 PE=2 SV=1[more]
DHX33_MOUSE1.1e-1031.91Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33 PE=1 SV=1[more]
PRH1_SCHPO1.1e-1055.00Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe (strain 97... [more]
BLAST of CSPI06G02350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDJ5_CUCSA2.3e-7199.31Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014760 PE=4 SV=1[more]
A0A0A0L7N3_CUCSA1.2e-4370.92Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077650 PE=4 SV=1[more]
A0A0J8C5S9_BETVU5.8e-3861.70Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g136350 PE=4 S... [more]
A0A0J8F075_BETVU5.8e-3861.70Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g136350 PE=4 S... [more]
V4THT1_9ROSI6.4e-3763.38Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030826mg PE=4 SV=1[more]
BLAST of CSPI06G02350 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G26370.15.4e-3556.34 RNA helicase family protein[more]
AT1G33390.13.4e-1336.88 RNA helicase family protein[more]
AT4G18465.11.9e-1132.14 RNA helicase family protein[more]
AT2G47250.17.8e-1047.46 RNA helicase family protein[more]
AT3G62310.13.0e-0946.43 RNA helicase family protein[more]
BLAST of CSPI06G02350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190652|gb|KGN45856.1|3.4e-7199.31hypothetical protein Csa_6G014760 [Cucumis sativus][more]
gi|778721976|ref|XP_011658383.1|2.0e-6897.16PREDICTED: probable ATP-dependent RNA helicase prh1 [Cucumis sativus][more]
gi|659126891|ref|XP_008463416.1|2.4e-4570.92PREDICTED: putative ATP-dependent RNA helicase DHX33 [Cucumis melo][more]
gi|449470445|ref|XP_004152927.1|1.7e-4370.92PREDICTED: putative ATP-dependent RNA helicase DHX33 [Cucumis sativus][more]
gi|700200998|gb|KGN56131.1|1.7e-4370.92hypothetical protein Csa_3G077650 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002464DNA/RNA_helicase_DEAH_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0008026ATP-dependent helicase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G02350.1CSPI06G02350.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved sitePROSITEPS00690DEAH_ATP_HELICASEcoord: 20..29
scor
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 7..48
score: 2.0E-13coord: 89..101
score: 2.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 89..142
score: 6.93E-7coord: 8..47
score: 6.9
NoneNo IPR availablePANTHERPTHR18934ATP-DEPENDENT RNA HELICASEcoord: 90..145
score: 2.4E-54coord: 5..49
score: 2.4
NoneNo IPR availablePANTHERPTHR18934:SF143DEAD/DEAH BOX HELICASEcoord: 90..145
score: 2.4E-54coord: 5..49
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G02350Csa6G014760Cucumber (Chinese Long) v2cpicuB314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G02350Cucurbita maxima (Rimu)cmacpiB488
CSPI06G02350Cucurbita moschata (Rifu)cmocpiB025
CSPI06G02350Cucurbita moschata (Rifu)cmocpiB477
CSPI06G02350Melon (DHL92) v3.5.1cpimeB468
CSPI06G02350Watermelon (Charleston Gray)cpiwcgB526
CSPI06G02350Watermelon (97103) v1cpiwmB478
CSPI06G02350Cucurbita pepo (Zucchini)cpecpiB322
CSPI06G02350Cucurbita pepo (Zucchini)cpecpiB585
CSPI06G02350Bottle gourd (USVL1VR-Ls)cpilsiB479
CSPI06G02350Melon (DHL92) v3.6.1cpimedB464
CSPI06G02350Cucumber (Gy14) v2cgybcpiB288
CSPI06G02350Silver-seed gourdcarcpiB0594
CSPI06G02350Cucumber (Chinese Long) v3cpicucB364
CSPI06G02350Watermelon (97103) v2cpiwmbB516
CSPI06G02350Wax gourdcpiwgoB583
CSPI06G02350Cucumber (Gy14) v1cgycpiB491
CSPI06G02350Cucurbita maxima (Rimu)cmacpiB035