Csa6G014760 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G014760
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionATP-dependent RNA helicase, putative; contains IPR002464 (DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site), IPR027417 (P-loop containing nucleoside triphosphate hydrolase)
LocationChr6 : 1738403 .. 1738840 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCTTTTATTAATTTTCAGGGAAGCACTGTTAGATTCTTATCTTTCTAGATATTCAGTTATTATTGTTGATGAAGCTCATGAAAGAACTGTTGATACTGATGTATTGCTAGGGTATTTGAAAAGAGTGCAGAAAGCAAGATCTAAATCTTTAACTGAATCTTCTAATGATCTGAACACAAATGATAATGGCTTGACGTTAGAAAATAGAAATAGCAGTGAATATGCCTTTTCCTTAAAGAGATGTCAAGGAAGGAAACTACCTCCCCTGAAGCTAATTATCATGTCAGCCAGCTTAAATGCACCCCTTTTCTCTGAGTTTTCTGGTGGAGCAAAGGTGTTCCATGTCCATGGGCGTCAGTATCCTGTAGCTATATTTTATACCCGCCAGCCCATACTAGATTACATAGAGGGTACTCTTATTACTATATTTTAG

mRNA sequence

ATGTCGCTTTTATTAATTTTCAGGGAAGCACTGTTAGATTCTTATCTTTCTAGATATTCAGTTATTATTGTTGATGAAGCTCATGAAAGAACTGTTGATACTGATGTATTGCTAGGGTATTTGAAAAGAGTGCAGAAAGCAAGATCTAAATCTTTAACTGAATCTTCTAATGATCTGAACACAAATGATAATGGCTTGACGTTAGAAAATAGAAATAGCAGTGAATATGCCTTTTCCTTAAAGAGATGTCAAGGAAGGAAACTACCTCCCCTGAAGCTAATTATCATGTCAGCCAGCTTAAATGCACCCCTTTTCTCTGAGTTTTCTGGTGGAGCAAAGGTGTTCCATGTCCATGGGCGTCAGTATCCTGTAGCTATATTTTATACCCGCCAGCCCATACTAGATTACATAGAGGGTACTCTTATTACTATATTTTAG

Coding sequence (CDS)

ATGTCGCTTTTATTAATTTTCAGGGAAGCACTGTTAGATTCTTATCTTTCTAGATATTCAGTTATTATTGTTGATGAAGCTCATGAAAGAACTGTTGATACTGATGTATTGCTAGGGTATTTGAAAAGAGTGCAGAAAGCAAGATCTAAATCTTTAACTGAATCTTCTAATGATCTGAACACAAATGATAATGGCTTGACGTTAGAAAATAGAAATAGCAGTGAATATGCCTTTTCCTTAAAGAGATGTCAAGGAAGGAAACTACCTCCCCTGAAGCTAATTATCATGTCAGCCAGCTTAAATGCACCCCTTTTCTCTGAGTTTTCTGGTGGAGCAAAGGTGTTCCATGTCCATGGGCGTCAGTATCCTGTAGCTATATTTTATACCCGCCAGCCCATACTAGATTACATAGAGGGTACTCTTATTACTATATTTTAG

Protein sequence

MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDNGLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPVAIFYTRQPILDYIEGTLITIF*
Homology
[Close]
BLAST of Csa6G014760 vs. Swiss-Prot
Match: PRP22_ARATH (Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Arabidopsis thaliana GN=RID1 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.6e-35
Identity = 80/142 (56.34%), Postives = 98/142 (69.01%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD +LSRYSVIIVDEAH+R+V TDVLL  LK++Q+ RS+ ++E +   N    
Sbjct: 142 LLLREALLDPHLSRYSVIIVDEAHDRSVHTDVLLALLKKIQRTRSQPVSEKTEFGNVASQ 201

Query: 65  -GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYP 124
              T  + N  +    LK  QGRKL PLKLIIMSASL+A +FSE+ GGAK  HV GRQ+P
Sbjct: 202 VQTTTRDANGPQQNGVLKGYQGRKLSPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFP 261

Query: 125 VAIFYTRQPILDYIEGTLITIF 146
           V I YT  P  DY++ TL+TIF
Sbjct: 262 VDILYTVHPESDYVDATLVTIF 283

[Close]
BLAST of Csa6G014760 vs. Swiss-Prot
Match: YK16_SCHPO (Putative ATP-dependent RNA helicase PB1A10.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB1A10.06c PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.3e-13
Identity = 49/138 (35.51%), Postives = 69/138 (50.00%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ RE   D  L+ YS +IVDEAHER+V+TD+LLG L R+ + R         +++ +D 
Sbjct: 502 ILLRELSSDFLLTAYSAVIVDEAHERSVNTDILLGLLSRIVRLR--------REMSKSD- 561

Query: 65  GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSE----FSGGAKVFHVHGR 124
                                +K+ PLKLIIMSA+L    FSE    FS    +  +  R
Sbjct: 562 ---------------------QKVKPLKLIIMSATLRVTDFSENKLLFSVPPPIIKIDAR 609

Query: 125 QYPVAIFYTRQPILDYIE 139
           QYPV+I + R    DY++
Sbjct: 622 QYPVSIHFNRTTKPDYLQ 609

[Close]
BLAST of Csa6G014760 vs. Swiss-Prot
Match: DEAH9_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 OS=Arabidopsis thaliana GN=At4g18465 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.7e-11
Identity = 45/140 (32.14%), Postives = 67/140 (47.86%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ RE + D  L++YSVI++DEAHER++ TD+LLG LK++Q+ R         +L    +
Sbjct: 150 VLIREMMEDPLLTKYSVIMIDEAHERSISTDILLGLLKKIQRRRP--------ELRLIIS 209

Query: 65  GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
             T+E +  S +  S K+   R  P         S   P          +  V GR + V
Sbjct: 210 SATIEAKTMSNFFNSSKK---RHAP-------EGSTPGPKLE-----PAILSVEGRGFSV 266

Query: 125 AIFYTRQPILDYIEGTLITI 145
            I Y  +P+ DYI   + TI
Sbjct: 270 KIHYVEEPVSDYIRSVVSTI 266

[Close]
BLAST of Csa6G014760 vs. Swiss-Prot
Match: DHR1_YEAST (Probable ATP-dependent RNA helicase DHR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ECM16 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.7e-11
Identity = 47/138 (34.06%), Postives = 65/138 (47.10%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ RE + D  L++YS II+DEAHER ++TD+L+G L R  + R+K              
Sbjct: 496 VLLREMMHDFKLTKYSSIIIDEAHERNINTDILIGMLSRCVRLRAK-------------- 555

Query: 65  GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSE----FSGGAKVFHVHGR 124
              L   N  E+              LKLIIMSA+L    FSE    F     V  V  R
Sbjct: 556 ---LHKENPIEH------------KKLKLIIMSATLRVSDFSENKTLFPIAPPVLQVDAR 604

Query: 125 QYPVAIFYTRQPILDYIE 139
           Q+PV+I + R+   +Y +
Sbjct: 616 QFPVSIHFNRRTAFNYTD 604

[Close]
BLAST of Csa6G014760 vs. Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prh1 PE=3 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-10
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 86  RKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPVAIFYTRQPILDYIEGTLITIF 145
           +K P L++IIMSA+LNA  FSEF  GA++ ++ GRQYPV I YT  P  DY++  L TIF
Sbjct: 237 KKRPALRVIIMSATLNAERFSEFFDGAEICYISGRQYPVQIHYTYTPEPDYLDACLRTIF 296


HSP 2 Score: 50.8 bits (120), Expect = 1.4e-05
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKAR 49
           ++ RE + D  LS+Y  +I+DEAHERT+ TD+LLG++K++ K R
Sbjct: 196 MLLRELINDPILSQYHTLILDEAHERTLMTDMLLGFVKKIIKKR 239

[Close]
BLAST of Csa6G014760 vs. TrEMBL
Match: A0A0A0KDJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014760 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 5.0e-74
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1 

Query: 1   MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLN 60
           MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLN
Sbjct: 1   MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLN 60

Query: 61  TNDNGLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGR 120
           TNDNGLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGR
Sbjct: 61  TNDNGLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGR 120

Query: 121 QYPVAIFYTRQPILDYIEGTLITIF 146
           QYPVAIFYTRQPILDYIEGTLITIF
Sbjct: 121 QYPVAIFYTRQPILDYIEGTLITIF 145

[Close]
BLAST of Csa6G014760 vs. TrEMBL
Match: A0A0A0L7N3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077650 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.4e-44
Identity = 99/141 (70.21%), Postives = 114/141 (80.85%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLSRYSVIIVDEAHERTV+TDVLLG+LK+VQK RS+SL +S N  N N N
Sbjct: 134 LLLREALLDPYLSRYSVIIVDEAHERTVNTDVLLGFLKKVQKTRSRSLNDSFNTENMNTN 193

Query: 65  GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           G  LE  N+ +Y  SL++ +GRKL PLKLIIMSASL+A LFSE+ GGAK F V GRQYPV
Sbjct: 194 G-KLEKGNNGKYVSSLRQHRGRKLHPLKLIIMSASLDARLFSEYFGGAKAFRVQGRQYPV 253

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AI YTR+ +LDY E TLITIF
Sbjct: 254 AISYTRKHVLDYTEATLITIF 273

[Close]
BLAST of Csa6G014760 vs. TrEMBL
Match: A0A0J8F075_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g136350 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-38
Identity = 86/141 (60.99%), Postives = 105/141 (74.47%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLS+YSVI+VDEAHERTV TDVLLG LK VQKARS++  E  + +  N N
Sbjct: 134 LLLREALLDPYLSKYSVIVVDEAHERTVHTDVLLGLLKNVQKARSQTANELVDQIKIN-N 193

Query: 65  GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
              LE  N ++ A  LK+CQG KLPPL+LIIMSASL+A +FSE+ GGAK  HV GRQ+PV
Sbjct: 194 DTKLEKDNGTQMASPLKQCQGAKLPPLRLIIMSASLDARIFSEYFGGAKAVHVQGRQFPV 253

Query: 125 AIFYTRQPILDYIEGTLITIF 146
            IFYT     DY+E  +++IF
Sbjct: 254 DIFYTLHAETDYVEAAMVSIF 273

[Close]
BLAST of Csa6G014760 vs. TrEMBL
Match: A0A0J8C5S9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g136350 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-38
Identity = 86/141 (60.99%), Postives = 105/141 (74.47%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLS+YSVI+VDEAHERTV TDVLLG LK VQKARS++  E  + +  N N
Sbjct: 15  LLLREALLDPYLSKYSVIVVDEAHERTVHTDVLLGLLKNVQKARSQTANELVDQIKIN-N 74

Query: 65  GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
              LE  N ++ A  LK+CQG KLPPL+LIIMSASL+A +FSE+ GGAK  HV GRQ+PV
Sbjct: 75  DTKLEKDNGTQMASPLKQCQGAKLPPLRLIIMSASLDARIFSEYFGGAKAVHVQGRQFPV 134

Query: 125 AIFYTRQPILDYIEGTLITIF 146
            IFYT     DY+E  +++IF
Sbjct: 135 DIFYTLHAETDYVEAAMVSIF 154

[Close]
BLAST of Csa6G014760 vs. TrEMBL
Match: M1BY31_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021559 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 7.6e-38
Identity = 90/142 (63.38%), Postives = 105/142 (73.94%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSN-DLNTND 64
           L+ REALLD YLS+YSVIIVDEAHERT+ TDVLLG LK VQKARSKS+    N D N ++
Sbjct: 134 LLLREALLDPYLSKYSVIIVDEAHERTIHTDVLLGLLKNVQKARSKSINGVVNTDHNNSN 193

Query: 65  NGLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYP 124
           NG  LE R  ++    LK CQ +K  PLKLIIMSASL+A +FSE+ GGAK  HV GRQ+P
Sbjct: 194 NGHALEERIDNQNDGILKSCQVKKYNPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFP 253

Query: 125 VAIFYTRQPILDYIEGTLITIF 146
           V IFYT +P  D I+  LITIF
Sbjct: 254 VDIFYTHKPETDCIDAALITIF 275

[Close]
BLAST of Csa6G014760 vs. TAIR10
Match: AT1G26370.1 (AT1G26370.1 RNA helicase family protein)

HSP 1 Score: 147.9 bits (372), Expect = 4.9e-36
Identity = 80/142 (56.34%), Postives = 98/142 (69.01%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD +LSRYSVIIVDEAH+R+V TDVLL  LK++Q+ RS+ ++E +   N    
Sbjct: 142 LLLREALLDPHLSRYSVIIVDEAHDRSVHTDVLLALLKKIQRTRSQPVSEKTEFGNVASQ 201

Query: 65  -GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYP 124
              T  + N  +    LK  QGRKL PLKLIIMSASL+A +FSE+ GGAK  HV GRQ+P
Sbjct: 202 VQTTTRDANGPQQNGVLKGYQGRKLSPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFP 261

Query: 125 VAIFYTRQPILDYIEGTLITIF 146
           V I YT  P  DY++ TL+TIF
Sbjct: 262 VDILYTVHPESDYVDATLVTIF 283

[Close]
BLAST of Csa6G014760 vs. TAIR10
Match: AT1G33390.1 (AT1G33390.1 RNA helicase family protein)

HSP 1 Score: 74.3 bits (181), Expect = 6.8e-14
Identity = 54/141 (38.30%), Postives = 75/141 (53.19%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ RE   D  L RYSVII+DEAHER+++TD+L+G L RV K R +   E    L    +
Sbjct: 347 ILLREIQNDFLLRRYSVIILDEAHERSLNTDILIGMLTRVIKIRQEYYEEQQKSL---QS 406

Query: 65  GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVF-------HV 124
           G T+ +            CQ   + PLKLI+MSA+L      +F  G ++F        V
Sbjct: 407 GGTVTS-----------ECQ---ITPLKLILMSATLRV---EDFVSGKRLFPNIPPLIEV 466

Query: 125 HGRQYPVAIFYTRQ-PILDYI 138
             RQYPV I ++++  I+DYI
Sbjct: 467 PTRQYPVTIHFSKKTEIVDYI 467

[Close]
BLAST of Csa6G014760 vs. TAIR10
Match: AT4G18465.1 (AT4G18465.1 RNA helicase family protein)

HSP 1 Score: 68.6 bits (166), Expect = 3.7e-12
Identity = 45/140 (32.14%), Postives = 67/140 (47.86%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ RE + D  L++YSVI++DEAHER++ TD+LLG LK++Q+ R         +L    +
Sbjct: 150 VLIREMMEDPLLTKYSVIMIDEAHERSISTDILLGLLKKIQRRRP--------ELRLIIS 209

Query: 65  GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
             T+E +  S +  S K+   R  P         S   P          +  V GR + V
Sbjct: 210 SATIEAKTMSNFFNSSKK---RHAP-------EGSTPGPKLE-----PAILSVEGRGFSV 266

Query: 125 AIFYTRQPILDYIEGTLITI 145
            I Y  +P+ DYI   + TI
Sbjct: 270 KIHYVEEPVSDYIRSVVSTI 266

[Close]
BLAST of Csa6G014760 vs. TAIR10
Match: AT2G47250.1 (AT2G47250.1 RNA helicase family protein)

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-10
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1 

Query: 69  ENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPVAIFY 128
           E   +++  F L +   R  P LKL++MSA+L A  F E+  GA +  V GR +PV IFY
Sbjct: 195 ERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLHPVEIFY 254

Query: 129 TRQPILDYIEGTLITI 145
           T++P  DY+E  + T+
Sbjct: 255 TQEPERDYLEAAIRTV 270


HSP 2 Score: 55.1 bits (131), Expect = 4.3e-08
Identity = 33/72 (45.83%), Postives = 37/72 (51.39%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ REA+ D  L RY VII+DEAHERT+ TDVL G LK V + R         DL     
Sbjct: 171 MLLREAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRP--------DLKLVVM 230

Query: 65  GLTLENRNSSEY 77
             TLE     EY
Sbjct: 231 SATLEAEKFQEY 234

[Close]
BLAST of Csa6G014760 vs. TAIR10
Match: AT3G62310.1 (AT3G62310.1 RNA helicase family protein)

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-09
Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 1 

Query: 69  ENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPVAIFY 128
           E   +++  F L +   +  P LKL++MSA+L A  F ++  GA +  V GR +PV IFY
Sbjct: 191 ERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQDYFSGAPLMKVPGRLHPVEIFY 250

Query: 129 TRQPILDYIEGTLITI 145
           T++P  DY+E  + T+
Sbjct: 251 TQEPERDYLEAAIRTV 266


HSP 2 Score: 55.5 bits (132), Expect = 3.3e-08
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKAR 49
           ++ REA+ D  L RY VII+DEAHERT+ TDVL G LK V K R
Sbjct: 167 MLLREAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNR 210

[Close]
BLAST of Csa6G014760 vs. NCBI nr
Match: gi|700190652|gb|KGN45856.1| (hypothetical protein Csa_6G014760 [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 7.2e-74
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1 

Query: 1   MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLN 60
           MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLN
Sbjct: 1   MSLLLIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLN 60

Query: 61  TNDNGLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGR 120
           TNDNGLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGR
Sbjct: 61  TNDNGLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGR 120

Query: 121 QYPVAIFYTRQPILDYIEGTLITIF 146
           QYPVAIFYTRQPILDYIEGTLITIF
Sbjct: 121 QYPVAIFYTRQPILDYIEGTLITIF 145

[Close]
BLAST of Csa6G014760 vs. NCBI nr
Match: gi|778721976|ref|XP_011658383.1| (PREDICTED: probable ATP-dependent RNA helicase prh1 [Cucumis sativus])

HSP 1 Score: 274.6 bits (701), Expect = 9.8e-71
Identity = 138/141 (97.87%), Postives = 140/141 (99.29%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           ++ REALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN
Sbjct: 145 ILLREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 204

Query: 65  GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV
Sbjct: 205 GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 264

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AIFYTRQPILDYIEGTLITIF
Sbjct: 265 AIFYTRQPILDYIEGTLITIF 285

[Close]
BLAST of Csa6G014760 vs. NCBI nr
Match: gi|659126891|ref|XP_008463416.1| (PREDICTED: putative ATP-dependent RNA helicase DHX33 [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 4.9e-46
Identity = 99/141 (70.21%), Postives = 115/141 (81.56%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLSRYSVIIVDEAHERTV TDVLLG+LK+VQK RS+SL +S N  N N N
Sbjct: 134 LLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGFLKKVQKTRSRSLNDSFNTENVNTN 193

Query: 65  GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           GL LE  N+ +Y  SL++ +GRKLPPLKLIIMSASL+A LFSE+ GGA+ F + GRQYPV
Sbjct: 194 GLVLEKGNNGKYVSSLRQHRGRKLPPLKLIIMSASLDARLFSEYFGGARAFRIPGRQYPV 253

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AI YTR+ +LDY E TLITIF
Sbjct: 254 AISYTRKHVLDYSETTLITIF 274

[Close]
BLAST of Csa6G014760 vs. NCBI nr
Match: gi|449470445|ref|XP_004152927.1| (PREDICTED: putative ATP-dependent RNA helicase DHX33 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 3.5e-44
Identity = 99/141 (70.21%), Postives = 114/141 (80.85%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLSRYSVIIVDEAHERTV+TDVLLG+LK+VQK RS+SL +S N  N N N
Sbjct: 134 LLLREALLDPYLSRYSVIIVDEAHERTVNTDVLLGFLKKVQKTRSRSLNDSFNTENMNTN 193

Query: 65  GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           G  LE  N+ +Y  SL++ +GRKL PLKLIIMSASL+A LFSE+ GGAK F V GRQYPV
Sbjct: 194 G-KLEKGNNGKYVSSLRQHRGRKLHPLKLIIMSASLDARLFSEYFGGAKAFRVQGRQYPV 253

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AI YTR+ +LDY E TLITIF
Sbjct: 254 AISYTRKHVLDYTEATLITIF 273

[Close]
BLAST of Csa6G014760 vs. NCBI nr
Match: gi|700200998|gb|KGN56131.1| (hypothetical protein Csa_3G077650 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 3.5e-44
Identity = 99/141 (70.21%), Postives = 114/141 (80.85%), Query Frame = 1 

Query: 5   LIFREALLDSYLSRYSVIIVDEAHERTVDTDVLLGYLKRVQKARSKSLTESSNDLNTNDN 64
           L+ REALLD YLSRYSVIIVDEAHERTV+TDVLLG+LK+VQK RS+SL +S N  N N N
Sbjct: 134 LLLREALLDPYLSRYSVIIVDEAHERTVNTDVLLGFLKKVQKTRSRSLNDSFNTENMNTN 193

Query: 65  GLTLENRNSSEYAFSLKRCQGRKLPPLKLIIMSASLNAPLFSEFSGGAKVFHVHGRQYPV 124
           G  LE  N+ +Y  SL++ +GRKL PLKLIIMSASL+A LFSE+ GGAK F V GRQYPV
Sbjct: 194 G-KLEKGNNGKYVSSLRQHRGRKLHPLKLIIMSASLDARLFSEYFGGAKAFRVQGRQYPV 253

Query: 125 AIFYTRQPILDYIEGTLITIF 146
           AI YTR+ +LDY E TLITIF
Sbjct: 254 AISYTRKHVLDYTEATLITIF 273

The following BLAST results are available for this feature:
BLAST of Csa6G014760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PRP22_ARATH8.6e-3556.34Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Arabidopsis thalia... [more]
YK16_SCHPO9.3e-1335.51Putative ATP-dependent RNA helicase PB1A10.06c OS=Schizosaccharomyces pombe (str... [more]
DEAH9_ARATH6.7e-1132.14Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 OS=Arabidopsi... [more]
DHR1_YEAST8.7e-1134.06Probable ATP-dependent RNA helicase DHR1 OS=Saccharomyces cerevisiae (strain ATC... [more]
PRH1_SCHPO1.5e-1055.00Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe (strain 97... [more]
BLAST of Csa6G014760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDJ5_CUCSA5.0e-74100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014760 PE=4 SV=1[more]
A0A0A0L7N3_CUCSA2.4e-4470.21Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077650 PE=4 SV=1[more]
A0A0J8F075_BETVU1.5e-3860.99Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g136350 PE=4 S... [more]
A0A0J8C5S9_BETVU1.5e-3860.99Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g136350 PE=4 S... [more]
M1BY31_SOLTU7.6e-3863.38Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021559 PE=4 SV=1[more]
BLAST of Csa6G014760 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G26370.14.9e-3656.34 RNA helicase family protein[more]
AT1G33390.16.8e-1438.30 RNA helicase family protein[more]
AT4G18465.13.7e-1232.14 RNA helicase family protein[more]
AT2G47250.14.6e-1040.79 RNA helicase family protein[more]
AT3G62310.12.3e-0938.16 RNA helicase family protein[more]
BLAST of Csa6G014760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190652|gb|KGN45856.1|7.2e-74100.00hypothetical protein Csa_6G014760 [Cucumis sativus][more]
gi|778721976|ref|XP_011658383.1|9.8e-7197.87PREDICTED: probable ATP-dependent RNA helicase prh1 [Cucumis sativus][more]
gi|659126891|ref|XP_008463416.1|4.9e-4670.21PREDICTED: putative ATP-dependent RNA helicase DHX33 [Cucumis melo][more]
gi|449470445|ref|XP_004152927.1|3.5e-4470.21PREDICTED: putative ATP-dependent RNA helicase DHX33 [Cucumis sativus][more]
gi|700200998|gb|KGN56131.1|3.5e-4470.21hypothetical protein Csa_3G077650 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002464DNA/RNA_helicase_DEAH_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0008026ATP-dependent helicase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G014760.1Csa6G014760.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved sitePROSITEPS00690DEAH_ATP_HELICASEcoord: 20..29
scor
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 89..101
score: 2.0E-13coord: 7..48
score: 2.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 89..142
score: 6.73E-7coord: 8..47
score: 6.7
NoneNo IPR availablePANTHERPTHR18934ATP-DEPENDENT RNA HELICASEcoord: 5..49
score: 3.9E-54coord: 90..145
score: 3.9
NoneNo IPR availablePANTHERPTHR18934:SF143DEAD/DEAH BOX HELICASEcoord: 90..145
score: 3.9E-54coord: 5..49
score: 3.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G014760CSPI06G02350Wild cucumber (PI 183967)cpicuB314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G014760Silver-seed gourdcarcuB0588
Csa6G014760Watermelon (97103) v2cuwmbB490
Csa6G014760Wax gourdcuwgoB576
Csa6G014760Cucumber (Gy14) v1cgycuB465
Csa6G014760Cucurbita maxima (Rimu)cmacuB035
Csa6G014760Cucurbita maxima (Rimu)cmacuB485
Csa6G014760Cucurbita moschata (Rifu)cmocuB025
Csa6G014760Cucurbita moschata (Rifu)cmocuB473
Csa6G014760Melon (DHL92) v3.5.1cumeB415
Csa6G014760Watermelon (Charleston Gray)cuwcgB500
Csa6G014760Watermelon (97103) v1cuwmB465
Csa6G014760Cucurbita pepo (Zucchini)cpecuB321
Csa6G014760Cucurbita pepo (Zucchini)cpecuB584
Csa6G014760Bottle gourd (USVL1VR-Ls)culsiB471
Csa6G014760Cucumber (Gy14) v2cgybcuB282
Csa6G014760Melon (DHL92) v3.6.1cumedB455