Csa6G014710.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G014710.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 1714020 .. 1714500 (-)
Sequence length258
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCGTGGCTAATCCTAGAACATGCAAGGAATGGAGAGTACATGTTATTCTTACTTTTGTATTTTGGGCATTTGGTCCTTGTATAGAAGCCTTTAGCAAATGTTGATCGATTATTCAAATAGATGACACTCACTTATATGGTAAATATCAAGGCAAGTTGCTAATAGCCACACATCTGTTGATCTTCTCCCACTTGCATTTGACGTTGTAGAGGAGTCTGCAGATTCCTAGGGGTGGTTTTCTAATTTTTTTTTTTCAATTCACAGATATCGAACAACATTAGTCTTCATGATGTTGCAGATGTGCAACAACATATTCTTGATATATCCAATAATAATGAGAGGTACATGGAGGAGATACATTACATTGTACCTCCATCGGTTCGTAGAGGACATGTTCGAGTGGAAGAAGTTGAACTAGATGAGATTTACCATAATCTGAAAGAATTGCATCCTATGATACAGACCCAGAGTTAG

mRNA sequence

ATGAAGATCGTGGCTAATCCTAGAACATGCAAGGAATGGAGAGTACATATATCGAACAACATTAGTCTTCATGATGTTGCAGATGTGCAACAACATATTCTTGATATATCCAATAATAATGAGAGGTACATGGAGGAGATACATTACATTGTACCTCCATCGGTTCGTAGAGGACATGTTCGAGTGGAAGAAGTTGAACTAGATGAGATTTACCATAATCTGAAAGAATTGCATCCTATGATACAGACCCAGAGTTAG

Coding sequence (CDS)

ATGAAGATCGTGGCTAATCCTAGAACATGCAAGGAATGGAGAGTACATATATCGAACAACATTAGTCTTCATGATGTTGCAGATGTGCAACAACATATTCTTGATATATCCAATAATAATGAGAGGTACATGGAGGAGATACATTACATTGTACCTCCATCGGTTCGTAGAGGACATGTTCGAGTGGAAGAAGTTGAACTAGATGAGATTTACCATAATCTGAAAGAATTGCATCCTATGATACAGACCCAGAGTTAG

Protein sequence

MKIVANPRTCKEWRVHISNNISLHDVADVQQHILDISNNNERYMEEIHYIVPPSVRRGHVRVEEVELDEIYHNLKELHPMIQTQS*
Homology
[Close]
BLAST of Csa6G014710.1 vs. TrEMBL
Match: A0A0A0KDI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014710 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.0e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MKIVANPRTCKEWRVHISNNISLHDVADVQQHILDISNNNERYMEEIHYIVPPSVRRGHV 60
          MKIVANPRTCKEWRVHISNNISLHDVADVQQHILDISNNNERYMEEIHYIVPPSVRRGHV
Sbjct: 1  MKIVANPRTCKEWRVHISNNISLHDVADVQQHILDISNNNERYMEEIHYIVPPSVRRGHV 60

Query: 61 RVEEVELDEIYHNLKELHPMIQTQS 86
          RVEEVELDEIYHNLKELHPMIQTQS
Sbjct: 61 RVEEVELDEIYHNLKELHPMIQTQS 85

[Close]
BLAST of Csa6G014710.1 vs. NCBI nr
Match: gi|700190647|gb|KGN45851.1| (hypothetical protein Csa_6G014710 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 4.3e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MKIVANPRTCKEWRVHISNNISLHDVADVQQHILDISNNNERYMEEIHYIVPPSVRRGHV 60
          MKIVANPRTCKEWRVHISNNISLHDVADVQQHILDISNNNERYMEEIHYIVPPSVRRGHV
Sbjct: 1  MKIVANPRTCKEWRVHISNNISLHDVADVQQHILDISNNNERYMEEIHYIVPPSVRRGHV 60

Query: 61 RVEEVELDEIYHNLKELHPMIQTQS 86
          RVEEVELDEIYHNLKELHPMIQTQS
Sbjct: 61 RVEEVELDEIYHNLKELHPMIQTQS 85

[Close]
BLAST of Csa6G014710.1 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 8.5e-06
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1 

Query: 18  SNNISLHDVADVQQHILDISNNNERYMEEIHY-----IVPPSVRRGHVRVEEV-ELDEIY 77
           SNN  L ++AD  Q +L+I N+NE+YME IHY     IVP  V+R    V+E  +L+E+ 
Sbjct: 51  SNNTRLRNIADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVD 110

Query: 78  HNLKELHPMIQTQS 86
            + +E+ PM QTQ+
Sbjct: 111 QHGEEVPPMTQTQT 124

The following BLAST results are available for this feature:
BLAST of Csa6G014710.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDI9_CUCSA3.0e-42100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014710 PE=4 SV=1[more]
BLAST of Csa6G014710.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190647|gb|KGN45851.1|4.3e-42100.00hypothetical protein Csa_6G014710 [Cucumis sativus][more]
gi|659069376|ref|XP_008449513.1|8.5e-0644.59PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G014710Csa6G014710gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G014710.1Csa6G014710.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G014710.1.cds2Csa6G014710.1.cds2CDS
Csa6G014710.1.cds1Csa6G014710.1.cds1CDS