Csa6G014710 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G014710
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 1714020 .. 1714500 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATCGTGGCTAATCCTAGAACATGCAAGGAATGGAGAGTACATGTTATTCTTACTTTTGTATTTTGGGCATTTGGTCCTTGTATAGAAGCCTTTAGCAAATGTTGATCGATTATTCAAATAGATGACACTCACTTATATGGTAAATATCAAGGCAAGTTGCTAATAGCCACACATCTGTTGATCTTCTCCCACTTGCATTTGACGTTGTAGAGGAGTCTGCAGATTCCTAGGGGTGGTTTTCTAATTTTTTTTTTTCAATTCACAGATATCGAACAACATTAGTCTTCATGATGTTGCAGATGTGCAACAACATATTCTTGATATATCCAATAATAATGAGAGGTACATGGAGGAGATACATTACATTGTACCTCCATCGGTTCGTAGAGGACATGTTCGAGTGGAAGAAGTTGAACTAGATGAGATTTACCATAATCTGAAAGAATTGCATCCTATGATACAGACCCAGAGTTAG

mRNA sequence

ATGAAGATCGTGGCTAATCCTAGAACATGCAAGGAATGGAGAGTACATATATCGAACAACATTAGTCTTCATGATGTTGCAGATGTGCAACAACATATTCTTGATATATCCAATAATAATGAGAGGTACATGGAGGAGATACATTACATTGTACCTCCATCGGTTCGTAGAGGACATGTTCGAGTGGAAGAAGTTGAACTAGATGAGATTTACCATAATCTGAAAGAATTGCATCCTATGATACAGACCCAGAGTTAG

Coding sequence (CDS)

ATGAAGATCGTGGCTAATCCTAGAACATGCAAGGAATGGAGAGTACATATATCGAACAACATTAGTCTTCATGATGTTGCAGATGTGCAACAACATATTCTTGATATATCCAATAATAATGAGAGGTACATGGAGGAGATACATTACATTGTACCTCCATCGGTTCGTAGAGGACATGTTCGAGTGGAAGAAGTTGAACTAGATGAGATTTACCATAATCTGAAAGAATTGCATCCTATGATACAGACCCAGAGTTAG

Protein sequence

MKIVANPRTCKEWRVHISNNISLHDVADVQQHILDISNNNERYMEEIHYIVPPSVRRGHVRVEEVELDEIYHNLKELHPMIQTQS*

Homology

[Close]

BLAST of Csa6G014710 vs. TrEMBL
Match: A0A0A0KDI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014710 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.0e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 1  MKIVANPRTCKEWRVHISNNISLHDVADVQQHILDISNNNERYMEEIHYIVPPSVRRGHV 60
          MKIVANPRTCKEWRVHISNNISLHDVADVQQHILDISNNNERYMEEIHYIVPPSVRRGHV
Sbjct: 1  MKIVANPRTCKEWRVHISNNISLHDVADVQQHILDISNNNERYMEEIHYIVPPSVRRGHV 60

Query: 61 RVEEVELDEIYHNLKELHPMIQTQS 86
          RVEEVELDEIYHNLKELHPMIQTQS
Sbjct: 61 RVEEVELDEIYHNLKELHPMIQTQS 85

[Close]

BLAST of Csa6G014710 vs. NCBI nr
Match: gi|700190647|gb|KGN45851.1| (hypothetical protein Csa_6G014710 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 4.3e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 1  MKIVANPRTCKEWRVHISNNISLHDVADVQQHILDISNNNERYMEEIHYIVPPSVRRGHV 60
          MKIVANPRTCKEWRVHISNNISLHDVADVQQHILDISNNNERYMEEIHYIVPPSVRRGHV
Sbjct: 1  MKIVANPRTCKEWRVHISNNISLHDVADVQQHILDISNNNERYMEEIHYIVPPSVRRGHV 60

Query: 61 RVEEVELDEIYHNLKELHPMIQTQS 86
          RVEEVELDEIYHNLKELHPMIQTQS
Sbjct: 61 RVEEVELDEIYHNLKELHPMIQTQS 85

[Close]

BLAST of Csa6G014710 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 8.5e-06
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1


Query: 18  SNNISLHDVADVQQHILDISNNNERYMEEIHY-----IVPPSVRRGHVRVEEV-ELDEIY 77
           SNN  L ++AD  Q +L+I N+NE+YME IHY     IVP  V+R    V+E  +L+E+ 
Sbjct: 51  SNNTRLRNIADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVD 110

Query: 78  HNLKELHPMIQTQS 86
            + +E+ PM QTQ+
Sbjct: 111 QHGEEVPPMTQTQT 124

The following BLAST results are available for this feature:

BLAST of Csa6G014710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDI9_CUCSA	3.0e-42	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014710 PE=4 SV=1	[more]

BLAST of Csa6G014710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190647\|gb\|KGN45851.1\|	4.3e-42	100.00	hypothetical protein Csa_6G014710 [Cucumis sativus]	[more]
gi\|659069376\|ref\|XP_008449513.1\|	8.5e-06	44.59	PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G014710.1	Csa6G014710.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G014710	Cucurbita moschata (Rifu)	cmocuB025
Csa6G014710	Cucurbita moschata (Rifu)	cmocuB473
Csa6G014710	Melon (DHL92) v3.5.1	cumeB415
Csa6G014710	Watermelon (Charleston Gray)	cuwcgB500
Csa6G014710	Watermelon (97103) v1	cuwmB465
Csa6G014710	Cucurbita pepo (Zucchini)	cpecuB321
Csa6G014710	Cucurbita pepo (Zucchini)	cpecuB584
Csa6G014710	Bottle gourd (USVL1VR-Ls)	culsiB471
Csa6G014710	Cucumber (Gy14) v2	cgybcuB282
Csa6G014710	Melon (DHL92) v3.6.1	cumedB455
Csa6G014710	Silver-seed gourd	carcuB0588
Csa6G014710	Wax gourd	cuwgoB576
Csa6G014710	Cucumber (Gy14) v1	cgycuB465
Csa6G014710	Cucurbita maxima (Rimu)	cmacuB035
Csa6G014710	Cucurbita maxima (Rimu)	cmacuB485