Csa4G663640 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G663640
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 23032604 .. 23033289 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGGCTTTGTGGTCAAGAAGGATCATGTAAGTGTTTTTAGGATCAATTAATTCTAATGCAGAAGCTCACAAGGTGGCCTAGACACTCATAGATATATATGTACTGTTAAGTTTGTCATGCGTCCTTGTTGGCCACAGCAAAAACACTTCCCAGAGTGTTGGTTTGGCATAGGAATATTCCTTTGGGATTCTTGAGTTTTCTGTAGGCTTAAATTTGTTTTCTTTTGTTTTGCTAAAAGGATATGTGGAAGTACCACCTATTTCAAATGTTCTTTGGGGTTTCAAAATTTCCTTCTTTGAGATTTATCGTGATACTCCAGCTGGATCATTCTATTGCATTCGGGGTTTTGTGAATCTCTTTCTATTGTGGCTGTCCAATCCACTGATTCCACCTTGGGCTGGGATGGTGTTTTTTGGTGGTTCTTGAATAATTTACAGGTTTGAATTTTGTCTGAAATGTCTTTTTTCTTTATGTGCAGGTATATTAAATCCTTGGGGTCACTTTGAAGGCGTTCTTGTGCTTGTAAGCTACCTTCGTTTCTGTTTTATTGACTCCGAATTGTTCTCTCTGCTTTCTTTCACGATTGTTGATTTTTTTCGTTAGTGTGGATCACTGTCGCTGTCATCAACCGCTCAAATTGAATGCTCTGATTCTAAATTTATGTCATTTAGTATTTGGTAA

mRNA sequence

ATGAGTGGGCTTTGTGGTCAAGAAGGATCATCAAAAACACTTCCCAGAGTGTTGGTTTGGCATAGGAATATTCCTTTGGGATTCTTGAGTTTTCTCTGGATCATTCTATTGCATTCGGGGTTTTGTGAATCTCTTTCTATTGTGGCTGTCCAATCCACTGATTCCACCTTGGGCTGGGATGGTATATTAAATCCTTGGGGTCACTTTGAAGGCGTTCTTGTGCTTTGTGGATCACTGTCGCTGTCATCAACCGCTCAAATTGAATGCTCTGATTCTAAATTTATGTCATTTAGTATTTGGTAA

Coding sequence (CDS)

ATGAGTGGGCTTTGTGGTCAAGAAGGATCATCAAAAACACTTCCCAGAGTGTTGGTTTGGCATAGGAATATTCCTTTGGGATTCTTGAGTTTTCTCTGGATCATTCTATTGCATTCGGGGTTTTGTGAATCTCTTTCTATTGTGGCTGTCCAATCCACTGATTCCACCTTGGGCTGGGATGGTATATTAAATCCTTGGGGTCACTTTGAAGGCGTTCTTGTGCTTTGTGGATCACTGTCGCTGTCATCAACCGCTCAAATTGAATGCTCTGATTCTAAATTTATGTCATTTAGTATTTGGTAA

Protein sequence

MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWDGILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW*
Homology
[Close]
BLAST of Csa4G663640 vs. TrEMBL
Match: A0A0A0L0R3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G663640 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 8.3e-52
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60
           MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD
Sbjct: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60

Query: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 101
           GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW
Sbjct: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 100

[Close]
BLAST of Csa4G663640 vs. NCBI nr
Match: gi|700200347|gb|KGN55505.1| (hypothetical protein Csa_4G663640 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 1.2e-51
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60
           MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD
Sbjct: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60

Query: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 101
           GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW
Sbjct: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 100

The following BLAST results are available for this feature:
BLAST of Csa4G663640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0R3_CUCSA8.3e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G663640 PE=4 SV=1[more]
BLAST of Csa4G663640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200347|gb|KGN55505.1|1.2e-51100.00hypothetical protein Csa_4G663640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU105035cucumber EST collection version 3.0transcribed_cluster
CU161462cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G663640.1Csa4G663640.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU105035CU105035transcribed_cluster
CU161462CU161462transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G663640CSPI04G26950Wild cucumber (PI 183967)cpicuB181
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G663640Cucumber (Chinese Long) v2cucuB151
Csa4G663640Cucumber (Gy14) v1cgycuB387
Csa4G663640Cucurbita maxima (Rimu)cmacuB024
Csa4G663640Cucurbita maxima (Rimu)cmacuB464
Csa4G663640Cucurbita moschata (Rifu)cmocuB015
Csa4G663640Cucurbita moschata (Rifu)cmocuB452
Csa4G663640Melon (DHL92) v3.5.1cumeB313
Csa4G663640Watermelon (Charleston Gray)cuwcgB280
Csa4G663640Watermelon (97103) v1cuwmB350
Csa4G663640Cucurbita pepo (Zucchini)cpecuB572
Csa4G663640Cucurbita pepo (Zucchini)cpecuB787
Csa4G663640Bottle gourd (USVL1VR-Ls)culsiB284
Csa4G663640Cucumber (Gy14) v2cgybcuB166
Csa4G663640Melon (DHL92) v3.6.1cumedB298
Csa4G663640Silver-seed gourdcarcuB0113
Csa4G663640Silver-seed gourdcarcuB0388
Csa4G663640Watermelon (97103) v2cuwmbB280
Csa4G663640Wax gourdcuwgoB419