CSPI04G26950 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G26950
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 23872283 .. 23872968 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGGCTTTGTGGTCAAGAAGGATCATGTAAGTGTTTTTGGGATCAATTAATTCTAATGCAGAAGCTCACAAGGTGGCCTAGACACTCATAGATATATATGTACTGTTAAGTTTGTCATGCGTCCTTGTTGGCCACAGCAAAAACACTTCCCAGAGTGTTGGTTTGGCATAGGAATATTCCTTTGGGATTCTTGAGTTTTCTGTAGGCTTAAATTTGTTTTCTTTTGTTTTGCTAAAAGGATATGTGGAAGTACCACCTATTTCAAATGTTCTTTGGGGTTTCAAAATTTCCTTCTTTGAGATTTATTGTGATACTCCAGCTGGATCATTCTATTGCATTCGGGGTTTTGTGAATCTCTTTCTATTGTGGCTGTCCAATCCACTGATTCCACCTTGGGCTGGGATGGTGTTTTTTGGTGGTTCTTGATTAATTTACAGGTTTGAATTTTGTCTGAAATGTCTTTTTTCTTTATGTGCAGGTATATTAAATCCTTGGGGTCACTTTGAAGGCGTTCTTGTGCTTGTAAGCTACCTTCGTTTCTGTTTTATTGACTCCGAATTGTTCTCTCTGCTTTCTTTCACGATTGTTGATTTTTTTCGTTAGTGTGGATCACTGTCGCTGTCATCAACCGCTCAAATTGAATGCTCTGATTCTAAATTTATGTCATTTAGTATTTGGTAA

mRNA sequence

ATGAGTGGGCTTTGTGGTCAAGAAGGATCATCAAAAACACTTCCCAGAGTGTTGGTTTGGCATAGGAATATTCCTTTGGGATTCTTGAGTTTTCTCTGGATCATTCTATTGCATTCGGGGTTTTGTGAATCTCTTTCTATTGTGGCTGTCCAATCCACTGATTCCACCTTGGGCTGGGATGGTATATTAAATCCTTGGGGTCACTTTGAAGGCGTTCTTGTGCTTTGTGGATCACTGTCGCTGTCATCAACCGCTCAAATTGAATGCTCTGATTCTAAATTTATGTCATTTAGTATTTGGTAA

Coding sequence (CDS)

ATGAGTGGGCTTTGTGGTCAAGAAGGATCATCAAAAACACTTCCCAGAGTGTTGGTTTGGCATAGGAATATTCCTTTGGGATTCTTGAGTTTTCTCTGGATCATTCTATTGCATTCGGGGTTTTGTGAATCTCTTTCTATTGTGGCTGTCCAATCCACTGATTCCACCTTGGGCTGGGATGGTATATTAAATCCTTGGGGTCACTTTGAAGGCGTTCTTGTGCTTTGTGGATCACTGTCGCTGTCATCAACCGCTCAAATTGAATGCTCTGATTCTAAATTTATGTCATTTAGTATTTGGTAA
Homology
[Close]
BLAST of CSPI04G26950 vs. TrEMBL
Match: A0A0A0L0R3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G663640 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.7e-52
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60
           MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD
Sbjct: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60

Query: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 101
           GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW
Sbjct: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 100

[Close]
BLAST of CSPI04G26950 vs. NCBI nr
Match: gi|700200347|gb|KGN55505.1| (hypothetical protein Csa_4G663640 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 2.4e-52
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60
           MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD
Sbjct: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60

Query: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 101
           GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW
Sbjct: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 100

The following BLAST results are available for this feature:
BLAST of CSPI04G26950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G26950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0R3_CUCSA1.7e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G663640 PE=4 SV=1[more]
BLAST of CSPI04G26950 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G26950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200347|gb|KGN55505.1|2.4e-52100.00hypothetical protein Csa_4G663640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G26950.1CSPI04G26950.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G26950Csa4G663640Cucumber (Chinese Long) v2cpicuB181
CSPI04G26950CsaV3_4G037310Cucumber (Chinese Long) v3cpicucB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G26950Cucumber (Chinese Long) v2cpicuB204
CSPI04G26950Melon (DHL92) v3.5.1cpimeB286
CSPI04G26950Melon (DHL92) v3.5.1cpimeB311
CSPI04G26950Watermelon (Charleston Gray)cpiwcgB290
CSPI04G26950Watermelon (97103) v1cpiwmB304
CSPI04G26950Watermelon (97103) v1cpiwmB357
CSPI04G26950Cucurbita pepo (Zucchini)cpecpiB573
CSPI04G26950Cucurbita pepo (Zucchini)cpecpiB789
CSPI04G26950Bottle gourd (USVL1VR-Ls)cpilsiB284
CSPI04G26950Bottle gourd (USVL1VR-Ls)cpilsiB320
CSPI04G26950Melon (DHL92) v3.6.1cpimedB281
CSPI04G26950Melon (DHL92) v3.6.1cpimedB302
CSPI04G26950Cucumber (Gy14) v2cgybcpiB169
CSPI04G26950Silver-seed gourdcarcpiB0118
CSPI04G26950Silver-seed gourdcarcpiB0393
CSPI04G26950Cucumber (Chinese Long) v3cpicucB245
CSPI04G26950Watermelon (97103) v2cpiwmbB287
CSPI04G26950Watermelon (97103) v2cpiwmbB343
CSPI04G26950Wax gourdcpiwgoB421
CSPI04G26950Wild cucumber (PI 183967)cpicpiB166
CSPI04G26950Cucumber (Gy14) v1cgycpiB409
CSPI04G26950Cucurbita maxima (Rimu)cmacpiB025
CSPI04G26950Cucurbita maxima (Rimu)cmacpiB188
CSPI04G26950Cucurbita maxima (Rimu)cmacpiB467
CSPI04G26950Cucurbita maxima (Rimu)cmacpiB811
CSPI04G26950Cucurbita moschata (Rifu)cmocpiB016
CSPI04G26950Cucurbita moschata (Rifu)cmocpiB456
CSPI04G26950Cucurbita moschata (Rifu)cmocpiB796