Csa4G291910.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAATGCCCATTGAACCTGATGCATCAATTTGGAGAGCTTTGCTCAGTTCATGTCAGATTAAAAGCAATAACAAGCTATTGGAGACCATCTTTGGAAAGCTTGTTGAATTAGAACCAAGCAATCCAGGCAATTTTATTTTGCTTTCCAATATTTATGCAGCAGCAGGCCTTTGGTCAGAAGTTGTACAGATAAGAAAGTGGCTTCGAGAAAGAGGTCTAGGAAAGCCTCCAGGAACTAGCTGGATTGTAATTGGCAATCAGGTTCACCATTTCACTGCTACTGATGTATTACACCCTCAATCAGAAAGAATTTACGAAAATTTGAATTCTTTGACATCATTGATCCGAGATTTGGGCTGACATTAAGGATTTTTCTGTCATCCAGCCAGACGTGATTTTGTGCGTGTTATGAAAAGAGCTTTT ATGCCCATTGAACCTGATGCATCAATTTGGAGAGCTTTGCTCAGTTCATGTCAGATTAAAAGCAATAACAAGCTATTGGAGACCATCTTTGGAAAGCTTGTTGAATTAGAACCAAGCAATCCAGGCAATTTTATTTTGCTTTCCAATATTTATGCAGCAGCAGGCCTTTGGTCAGAAGTTGTACAGATAAGAAAGTGGCTTCGAGAAAGAGGTCTAGGAAAGCCTCCAGGAACTAGCTGGATTGTAATTGGCAATCAGGTTCACCATTTCACTGCTACTGATGTATTACACCCTCAATCAGAAAGAATTTACGAAAATTTGAATTCTTTGACATCATTGATCCGAGATTTGGGCTGA ATGCCCATTGAACCTGATGCATCAATTTGGAGAGCTTTGCTCAGTTCATGTCAGATTAAAAGCAATAACAAGCTATTGGAGACCATCTTTGGAAAGCTTGTTGAATTAGAACCAAGCAATCCAGGCAATTTTATTTTGCTTTCCAATATTTATGCAGCAGCAGGCCTTTGGTCAGAAGTTGTACAGATAAGAAAGTGGCTTCGAGAAAGAGGTCTAGGAAAGCCTCCAGGAACTAGCTGGATTGTAATTGGCAATCAGGTTCACCATTTCACTGCTACTGATGTATTACACCCTCAATCAGAAAGAATTTACGAAAATTTGAATTCTTTGACATCATTGATCCGAGATTTGGGCTGA MPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRDLG*
BLAST of Csa4G291910.1 vs. Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2) HSP 1 Score: 115.9 bits (289), Expect = 3.0e-25 Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 1
BLAST of Csa4G291910.1 vs. Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 2.5e-24 Identity = 50/118 (42.37%), Postives = 75/118 (63.56%), Query Frame = 1
BLAST of Csa4G291910.1 vs. Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2) HSP 1 Score: 110.9 bits (276), Expect = 9.5e-24 Identity = 52/119 (43.70%), Postives = 77/119 (64.71%), Query Frame = 1
BLAST of Csa4G291910.1 vs. Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=3 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 1.4e-22 Identity = 48/118 (40.68%), Postives = 72/118 (61.02%), Query Frame = 1
BLAST of Csa4G291910.1 vs. Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 1.4e-22 Identity = 48/118 (40.68%), Postives = 72/118 (61.02%), Query Frame = 1
BLAST of Csa4G291910.1 vs. TrEMBL
Match: A0A0A0KZC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291910 PE=4 SV=1) HSP 1 Score: 242.3 bits (617), Expect = 3.1e-61 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1
BLAST of Csa4G291910.1 vs. TrEMBL
Match: A0A067JE40_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25923 PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 2.5e-39 Identity = 79/118 (66.95%), Postives = 95/118 (80.51%), Query Frame = 1
BLAST of Csa4G291910.1 vs. TrEMBL
Match: W9RTH5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015292 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 2.0e-36 Identity = 78/118 (66.10%), Postives = 94/118 (79.66%), Query Frame = 1
BLAST of Csa4G291910.1 vs. TrEMBL
Match: A0A059D8T5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03685 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 3.4e-36 Identity = 75/118 (63.56%), Postives = 93/118 (78.81%), Query Frame = 1
BLAST of Csa4G291910.1 vs. TrEMBL
Match: A5BC97_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043633 PE=4 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 6.4e-35 Identity = 73/118 (61.86%), Postives = 92/118 (77.97%), Query Frame = 1
BLAST of Csa4G291910.1 vs. TAIR10
Match: AT1G20230.1 (AT1G20230.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 115.9 bits (289), Expect = 1.7e-26 Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 1
BLAST of Csa4G291910.1 vs. TAIR10
Match: AT3G08820.1 (AT3G08820.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 112.8 bits (281), Expect = 1.4e-25 Identity = 50/118 (42.37%), Postives = 75/118 (63.56%), Query Frame = 1
BLAST of Csa4G291910.1 vs. TAIR10
Match: AT3G63370.1 (AT3G63370.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 109.8 bits (273), Expect = 1.2e-24 Identity = 49/111 (44.14%), Postives = 72/111 (64.86%), Query Frame = 1
BLAST of Csa4G291910.1 vs. TAIR10
Match: AT3G24000.1 (AT3G24000.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 107.1 bits (266), Expect = 7.8e-24 Identity = 48/118 (40.68%), Postives = 72/118 (61.02%), Query Frame = 1
BLAST of Csa4G291910.1 vs. TAIR10
Match: AT4G02750.1 (AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 107.1 bits (266), Expect = 7.8e-24 Identity = 48/118 (40.68%), Postives = 72/118 (61.02%), Query Frame = 1
BLAST of Csa4G291910.1 vs. NCBI nr
Match: gi|449448940|ref|XP_004142223.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Cucumis sativus]) HSP 1 Score: 242.3 bits (617), Expect = 4.4e-61 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1
BLAST of Csa4G291910.1 vs. NCBI nr
Match: gi|700199021|gb|KGN54179.1| (hypothetical protein Csa_4G291910 [Cucumis sativus]) HSP 1 Score: 242.3 bits (617), Expect = 4.4e-61 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1
BLAST of Csa4G291910.1 vs. NCBI nr
Match: gi|659097605|ref|XP_008449715.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis melo]) HSP 1 Score: 229.9 bits (585), Expect = 2.2e-57 Identity = 112/118 (94.92%), Postives = 116/118 (98.31%), Query Frame = 1
BLAST of Csa4G291910.1 vs. NCBI nr
Match: gi|802763448|ref|XP_012090003.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Jatropha curcas]) HSP 1 Score: 169.5 bits (428), Expect = 3.6e-39 Identity = 79/118 (66.95%), Postives = 95/118 (80.51%), Query Frame = 1
BLAST of Csa4G291910.1 vs. NCBI nr
Match: gi|1009118471|ref|XP_015875878.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like [Ziziphus jujuba]) HSP 1 Score: 169.5 bits (428), Expect = 3.6e-39 Identity = 79/118 (66.95%), Postives = 100/118 (84.75%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
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