Csa4G288100 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATACATTATAGGTCAAACCAAGCTTCGTTTGCGTATCAAAAGTCATTTATTCATAGAAATGTTGAACCTGTATTAGTCCATCTACATCAAGGGTTAAAACCAAATCCTTCTCATATTGGTTTCACCAATAATCTCAGTGTTGTTAAAGAGTCATCCTTTGCTATGACTTCCATCAACAGGCCAATTTCAATCAAAGTCGTGGTTACAATCAAACAGTGCATCAATGATTTGTTTCCACATTTTGGGTTCAAACCAAGGCTCGACCATATCACTAATTGGTGGCCAAGTCAAGCTCTTGGTTTGGAGTTTATTAGCAATGAGATGGATCCAAGTATGTTAATTTACTTAGCTTTATATATCAATGTTTTTATATTTAAGACATAGATAATTTAGACTTCATATATATATAATGTATTGATCAGCAACAGGATTGGAGAAGGGAACAACAAAAGCTTATGCAGAGAGAGTGAAGAGAAAGGATAACGAGGTAATTGTGTATGAGACAAAGGTGGTAATTCCAGCAGATTTTGGTGCAATTGGAGGAGTTTTGGTTGAGAATGAACACAACAAAGAGATGTTTCTTATGGACATTGTGATTCATGGAATTCCAACACAATATCATCTTCATTTCCCATGCAATTCTTGGATTCAGAGCAAAGATAGAAGAATCTTCTTCACCACTAAGGTCATTTAA ATGACTTCCATCAACAGGCCAATTTCAATCAAAGTCGTGGTTACAATCAAACAGTGCATCAATGATTTGTTTCCACATTTTGGGTTCAAACCAAGGCTCGACCATATCACTAATTGGTGGCCAAGTCAAGCTCTTGGTTTGGAGTTTATTAGCAATGAGATGGATCCAACAACAGGATTGGAGAAGGGAACAACAAAAGCTTATGCAGAGAGAGTGAAGAGAAAGGATAACGAGGTAATTGTGTATGAGACAAAGGTGGTAATTCCAGCAGATTTTGGTGCAATTGGAGGAGTTTTGGTTGAGAATGAACACAACAAAGAGATGTTTCTTATGGACATTGTGATTCATGGAATTCCAACACAATATCATCTTCATTTCCCATGCAATTCTTGGATTCAGAGCAAAGATAGAAGAATCTTCTTCACCACTAAGGTCATTTAA ATGACTTCCATCAACAGGCCAATTTCAATCAAAGTCGTGGTTACAATCAAACAGTGCATCAATGATTTGTTTCCACATTTTGGGTTCAAACCAAGGCTCGACCATATCACTAATTGGTGGCCAAGTCAAGCTCTTGGTTTGGAGTTTATTAGCAATGAGATGGATCCAACAACAGGATTGGAGAAGGGAACAACAAAAGCTTATGCAGAGAGAGTGAAGAGAAAGGATAACGAGGTAATTGTGTATGAGACAAAGGTGGTAATTCCAGCAGATTTTGGTGCAATTGGAGGAGTTTTGGTTGAGAATGAACACAACAAAGAGATGTTTCTTATGGACATTGTGATTCATGGAATTCCAACACAATATCATCTTCATTTCCCATGCAATTCTTGGATTCAGAGCAAAGATAGAAGAATCTTCTTCACCACTAAGGTCATTTAA MTSINRPISIKVVVTIKQCINDLFPHFGFKPRLDHITNWWPSQALGLEFISNEMDPTTGLEKGTTKAYAERVKRKDNEVIVYETKVVIPADFGAIGGVLVENEHNKEMFLMDIVIHGIPTQYHLHFPCNSWIQSKDRRIFFTTKVI*
BLAST of Csa4G288100 vs. Swiss-Prot
Match: LOX21_SOLTU (Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 4.3e-18 Identity = 56/148 (37.84%), Postives = 82/148 (55.41%), Query Frame = 1
BLAST of Csa4G288100 vs. Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2) HSP 1 Score: 82.8 bits (203), Expect = 3.4e-15 Identity = 51/149 (34.23%), Postives = 72/149 (48.32%), Query Frame = 1
BLAST of Csa4G288100 vs. Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 1.7e-14 Identity = 50/145 (34.48%), Postives = 74/145 (51.03%), Query Frame = 1
BLAST of Csa4G288100 vs. Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13 Identity = 53/149 (35.57%), Postives = 79/149 (53.02%), Query Frame = 1
BLAST of Csa4G288100 vs. Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 2.1e-12 Identity = 42/105 (40.00%), Postives = 56/105 (53.33%), Query Frame = 1
BLAST of Csa4G288100 vs. TrEMBL
Match: A0A0A0KZ97_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G288100 PE=4 SV=1) HSP 1 Score: 305.4 bits (781), Expect = 3.6e-80 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1
BLAST of Csa4G288100 vs. TrEMBL
Match: M5W1M2_PRUPE (Lipoxygenase OS=Prunus persica GN=PRUPE_ppa000968mg PE=3 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 2.0e-25 Identity = 65/141 (46.10%), Postives = 88/141 (62.41%), Query Frame = 1
BLAST of Csa4G288100 vs. TrEMBL
Match: B9HPT1_POPTR (Lipoxygenase OS=Populus trichocarpa GN=POPTR_0009s02750g PE=3 SV=2) HSP 1 Score: 120.9 bits (302), Expect = 1.3e-24 Identity = 65/141 (46.10%), Postives = 89/141 (63.12%), Query Frame = 1
BLAST of Csa4G288100 vs. TrEMBL
Match: S4UKZ5_MALDO (Lipoxygenase OS=Malus domestica GN=LOX6b PE=2 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 6.3e-24 Identity = 65/141 (46.10%), Postives = 85/141 (60.28%), Query Frame = 1
BLAST of Csa4G288100 vs. TrEMBL
Match: S4UKU6_MALDO (Lipoxygenase OS=Malus domestica GN=LOX6b PE=2 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 6.3e-24 Identity = 65/141 (46.10%), Postives = 85/141 (60.28%), Query Frame = 1
BLAST of Csa4G288100 vs. TAIR10
Match: AT1G17420.1 (AT1G17420.1 lipoxygenase 3) HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13 Identity = 42/105 (40.00%), Postives = 56/105 (53.33%), Query Frame = 1
BLAST of Csa4G288100 vs. TAIR10
Match: AT1G72520.1 (AT1G72520.1 PLAT/LH2 domain-containing lipoxygenase family protein) HSP 1 Score: 66.6 bits (161), Expect = 1.4e-11 Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 1
BLAST of Csa4G288100 vs. NCBI nr
Match: gi|700198981|gb|KGN54139.1| (hypothetical protein Csa_4G288100 [Cucumis sativus]) HSP 1 Score: 305.4 bits (781), Expect = 5.2e-80 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1
BLAST of Csa4G288100 vs. NCBI nr
Match: gi|449448964|ref|XP_004142235.1| (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis sativus]) HSP 1 Score: 302.4 bits (773), Expect = 4.4e-79 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1
BLAST of Csa4G288100 vs. NCBI nr
Match: gi|659098038|ref|XP_008449946.1| (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo]) HSP 1 Score: 280.4 bits (716), Expect = 1.8e-72 Identity = 132/144 (91.67%), Postives = 140/144 (97.22%), Query Frame = 1
BLAST of Csa4G288100 vs. NCBI nr
Match: gi|595832234|ref|XP_007206438.1| (hypothetical protein PRUPE_ppa000968mg [Prunus persica]) HSP 1 Score: 123.6 bits (309), Expect = 2.8e-25 Identity = 65/141 (46.10%), Postives = 88/141 (62.41%), Query Frame = 1
BLAST of Csa4G288100 vs. NCBI nr
Match: gi|566185986|ref|XP_002314229.2| (hypothetical protein POPTR_0009s02750g [Populus trichocarpa]) HSP 1 Score: 120.9 bits (302), Expect = 1.8e-24 Identity = 65/141 (46.10%), Postives = 89/141 (63.12%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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