Csa3G236050.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTTATTGCAAGTCACTGGAAATAGTTGGGTTGAAAATTAGATGCCGTTGTCGTATGGTGATTCAAGAAGGTCAGATTTAGTTGGTATAAATTGTTAGGTTAATACTACAAACCTAAGAGTTGGTGTCTAGTGATCGTTTAATGTGGAATCAGATTATGGAGTTATAAATTTGAATCTCAAAACTGTCATTTTCTTTCAGATGGATATTAAATAGTTTGTGTGGATTTCGTGAGTCAAATTAATAATTGTGCTCTTGCATATAGAGAATTTGATGAATATTAACAAATTACCAAATGTATTCTAACTAATTAACTTAAATTTTAGGTCTTGTGCTAGTTTAACCTTAATAGTTTATGGTTATGTTCAACAAGATGTTTAACCTTAACTTCTGGAGGAAGTTGAATTACTAGAAAGTTGGCTTAAGCTTTTTTAGTGGCCAATCCGATTTATTTATTTATTTATCATTATCATTATTATTTTGTATTACTGGAAGATCTTTGAATGTTATATACTTATATTTATATACTGAAATCATAATGTTTTGGCTATAAGGTTGGGAGGGGAGGGTGGATTGGAGAATGTTTGAATGGAGCTATCTTTAGATTTTGGGGCATGGGACAATCTAGTAGAACGCTTTGCATCCTCGTCTTCTTAGCATTCACTTTTTAGTTATTTCTTTTTTACAATAATTCCAATGTAATAAACATTTCGTAGCCTTTTTTTCCTTTTATGAACGGATTATCTTCTCACAATTTCTTTGCAATGTGTTTTGCATTGCAACCTTTTCCCTGTGCAACGTAAAGTGTTTCAGATTTTTTTTTCCATTCCTGTCCTTTCATTGCTTTGTTTAACTTGTTTTTTTTATTTGGTGGAAGTCAAATTCCCTTTCAAAACGTGTTGTGTGTGTGTGTAGTGAACATTTTACTCAATCTCATTCCATATCAGTCCTACAAATGCAAAGTACAATTTCTCTTATCTGGACTTTTTTCTGGATCTGAAGTGATTCTGAACTTTCAGATTTATTGAGTGGATATCTTTTGTTACTATAAAACATTGGAACTTTTTTTTTACTTCATGTGCCCATTTTAGAAATTTAGGTCTGGTGGAGTAAAAAAGTCTCTGAAGGAGGAAGCAATGGACAGTTTGAAAGCAATTAGTACAGGTCCAATTGAATCGAAGTCAACACCTTCACCTATACAAGCATTCTTGGGAGCAATAGCAGCTGGTGTTATTGCACTAATCTTATATAAATTCACCACTACCATTGAAGCTTCTCTGAACAGACAGACGGTGTCTGATAACTTCTCGGTATGCTCTCGTATTTACTTCATGTTTCAACTATTTCTTTGGGCGAACTATGGGAGGATTTCTCATTCACGTCATCCAAGATAATGACTTGAGCTAGCCAATGTTGGACATATGCTCTGTGTTTTTCCCTCAGAGAACTATTTGATTAATTTCTGTACATTGCATTAACAAATGGATAATGATACGTGTCTGACAATGAAATTAACCACGCAAAAAAATTAAACTTTTGTGAATTGATGTTCTCCTGGGGCTTGCCTCATATAATCTAAGAATGCCATTTAACAATTGGTTTCCATCTTTTTTAGGTTCGACAACTGACAATAACGATAAGGTAACTTCCTCAACTTACTCTAACTCCGTTTGCAGTTAGATAAAAGACTAGTGATCAATTTCGTATCTCTTACATGCAGAACTATCGTGAACGGACTATGCTACCTTGCAACATTTGTTTTCGGAATTAATGCAATTGGTTTATTCCTTTACTCTGGTCAGTTGGCCATGAATTCTGTTATGGAAGAAGGTTCCAAAGACACAGAACCTAAAGCTAAAAGTGATGAGCAAGTTAGCCCGCCAACTTCAACAGCTGAAACGACCCTCGATAGCACCGAATCAAGCAACAGCAAGGATGATCAAAGTTCAAGTAATTTGTAG ATGCCTTATTGCAAGTCACTGGAAATAGTTGGGTTGAAAATTAGATGCCGTTGTCGTATGGTGATTCAAGAAGTGAACATTTTACTCAATCTCATTCCATATCAGTCCTACAAATGCAAAGTACAATTTCTCTTATCTGGACTTTTTTCTGGATCTGAAAAATTTAGGTCTGGTGGAGTAAAAAAGTCTCTGAAGGAGGAAGCAATGGACAGTTTGAAAGCAATTAGTACAGGTCCAATTGAATCGAAGTCAACACCTTCACCTATACAAGCATTCTTGGGAGCAATAGCAGCTGGTGTTATTGCACTAATCTTATATAAATTCACCACTACCATTGAAGCTTCTCTGAACAGACAGACGGTGTCTGATAACTTCTCGGTTCGACAACTGACAATAACGATAAGAACTATCGTGAACGGACTATGCTACCTTGCAACATTTGTTTTCGGAATTAATGCAATTGGTTTATTCCTTTACTCTGGTCAGTTGGCCATGAATTCTGTTATGGAAGAAGGTTCCAAAGACACAGAACCTAAAGCTAAAAGTGATGAGCAAGTTAGCCCGCCAACTTCAACAGCTGAAACGACCCTCGATAGCACCGAATCAAGCAACAGCAAGGATGATCAAAGTTCAAGTAATTTGTAG ATGCCTTATTGCAAGTCACTGGAAATAGTTGGGTTGAAAATTAGATGCCGTTGTCGTATGGTGATTCAAGAAGTGAACATTTTACTCAATCTCATTCCATATCAGTCCTACAAATGCAAAGTACAATTTCTCTTATCTGGACTTTTTTCTGGATCTGAAAAATTTAGGTCTGGTGGAGTAAAAAAGTCTCTGAAGGAGGAAGCAATGGACAGTTTGAAAGCAATTAGTACAGGTCCAATTGAATCGAAGTCAACACCTTCACCTATACAAGCATTCTTGGGAGCAATAGCAGCTGGTGTTATTGCACTAATCTTATATAAATTCACCACTACCATTGAAGCTTCTCTGAACAGACAGACGGTGTCTGATAACTTCTCGGTTCGACAACTGACAATAACGATAAGAACTATCGTGAACGGACTATGCTACCTTGCAACATTTGTTTTCGGAATTAATGCAATTGGTTTATTCCTTTACTCTGGTCAGTTGGCCATGAATTCTGTTATGGAAGAAGGTTCCAAAGACACAGAACCTAAAGCTAAAAGTGATGAGCAAGTTAGCCCGCCAACTTCAACAGCTGAAACGACCCTCGATAGCACCGAATCAAGCAACAGCAAGGATGATCAAAGTTCAAGTAATTTGTAG MPYCKSLEIVGLKIRCRCRMVIQEVNILLNLIPYQSYKCKVQFLLSGLFSGSEKFRSGGVKKSLKEEAMDSLKAISTGPIESKSTPSPIQAFLGAIAAGVIALILYKFTTTIEASLNRQTVSDNFSVRQLTITIRTIVNGLCYLATFVFGINAIGLFLYSGQLAMNSVMEEGSKDTEPKAKSDEQVSPPTSTAETTLDSTESSNSKDDQSSSNL*
BLAST of Csa3G236050.1 vs. TrEMBL
Match: A0A0A0LAG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236050 PE=4 SV=1) HSP 1 Score: 414.5 bits (1064), Expect = 8.1e-113 Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1
BLAST of Csa3G236050.1 vs. TrEMBL
Match: B9SB97_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0649730 PE=4 SV=1) HSP 1 Score: 210.3 bits (534), Expect = 2.3e-51 Identity = 104/160 (65.00%), Postives = 132/160 (82.50%), Query Frame = 1
BLAST of Csa3G236050.1 vs. TrEMBL
Match: A0A067LBT5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15296 PE=4 SV=1) HSP 1 Score: 209.1 bits (531), Expect = 5.2e-51 Identity = 103/160 (64.38%), Postives = 134/160 (83.75%), Query Frame = 1
BLAST of Csa3G236050.1 vs. TrEMBL
Match: W9R7B4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012166 PE=4 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 1.5e-50 Identity = 107/158 (67.72%), Postives = 130/158 (82.28%), Query Frame = 1
BLAST of Csa3G236050.1 vs. TrEMBL
Match: B9I1E4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10000g PE=4 SV=2) HSP 1 Score: 207.6 bits (527), Expect = 1.5e-50 Identity = 105/161 (65.22%), Postives = 129/161 (80.12%), Query Frame = 1
BLAST of Csa3G236050.1 vs. TAIR10
Match: AT3G15110.1 (AT3G15110.1 unknown protein) HSP 1 Score: 183.0 bits (463), Expect = 2.0e-46 Identity = 101/160 (63.12%), Postives = 120/160 (75.00%), Query Frame = 1
BLAST of Csa3G236050.1 vs. NCBI nr
Match: gi|700202504|gb|KGN57637.1| (hypothetical protein Csa_3G236050 [Cucumis sativus]) HSP 1 Score: 414.5 bits (1064), Expect = 1.2e-112 Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1
BLAST of Csa3G236050.1 vs. NCBI nr
Match: gi|778688583|ref|XP_011652784.1| (PREDICTED: uncharacterized protein LOC101221005 [Cucumis sativus]) HSP 1 Score: 308.1 bits (788), Expect = 1.2e-80 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1
BLAST of Csa3G236050.1 vs. NCBI nr
Match: gi|659112411|ref|XP_008456207.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496210 [Cucumis melo]) HSP 1 Score: 296.2 bits (757), Expect = 4.6e-77 Identity = 155/161 (96.27%), Postives = 157/161 (97.52%), Query Frame = 1
BLAST of Csa3G236050.1 vs. NCBI nr
Match: gi|694317935|ref|XP_009340517.1| (PREDICTED: uncharacterized protein LOC103932610 [Pyrus x bretschneideri]) HSP 1 Score: 218.8 bits (556), Expect = 9.4e-54 Identity = 113/158 (71.52%), Postives = 136/158 (86.08%), Query Frame = 1
BLAST of Csa3G236050.1 vs. NCBI nr
Match: gi|658029128|ref|XP_008350007.1| (PREDICTED: uncharacterized protein LOC103413308 [Malus domestica]) HSP 1 Score: 216.5 bits (550), Expect = 4.6e-53 Identity = 111/158 (70.25%), Postives = 135/158 (85.44%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
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