Csa3G222800.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTGAAACCAAATCTTTGGAAGGATAAGAATCCACAACCATTACCATTCGTTGCCAAAAGATAAGGCGTTAACTCACATCCACACGCTCTCTATTTCACTCTCCACGTTATAGCCACACGACCCAAAAATCCTCTTTAAAAAACCCTCTCCACTCTCTCAATTCCATTTCATCTCATCTCATCTCCAATCCAACACAAGAACAATAAGAAAAATGAGCAGCACCACTGCAATCACCTCCCCATTTCCGGCCACCTCCTTCATCCGTCGGAATCCTACCGGTGGAGTGAGTTTCAAGCCATTTCCCAACATGGGTGAGTCTCTGTACGGGCTGAAACACCGCGGCGGACGACTGGCGATGAAGGCATACAAGGTGAAACTCATAACCCCAGATGGAGAGAAAACGGTTGAATGTGATGCTGATCTTTACATTTTGGATGCGGCTGAGGAAAGTGGGCTTGATCTTCCTTACTCTTGCAGAGCTGGGGCTTGTTCTTCATGCGTTGGGAAAGTGGTATCAGGGAAATTGGATCAATCTGATCAGAGTTTTCTTGATGATGAGCAAGTGGCTGAAGGTTGGGTTTTAACTTGTGTTGCTAGGCCTGAGTCTGATCTTGTAATTGAGACTCACAAGGAGGATTCCTTTGCTGGTTAAAACAGAGGAACAAGAAGGGATTAAACTTATTTTTTCTTTTTATCTTTTCTATCTTTGTTGATGAGAGTAAGCATAATGGACATTGTTTTCTTAGCTTGATGATGATGATGATGATGATGATGATATCTCTCTTTTAAAGTGTTTGTTGAAAATTGTATTGTTCATTACTGGTTTAAGTTTATTTACAACTCGGGTTTTGTTTATCTGTTGTTGGGTTCTTAACTTTCATTTCTTTTTGGCTTCTTTACTTTCATGTGAATGATACTGTCTTTTAGCTTCACGTATATCACTTTAGCTCTCCATTGTAAATCATTTTGTTTATTGTTTTATTTATATGTTGTTGGGTGGTTGTTAT ATGAGCAGCACCACTGCAATCACCTCCCCATTTCCGGCCACCTCCTTCATCCGTCGGAATCCTACCGGTGGAGTGAGTTTCAAGCCATTTCCCAACATGGGTGAGTCTCTGTACGGGCTGAAACACCGCGGCGGACGACTGGCGATGAAGGCATACAAGGTGAAACTCATAACCCCAGATGGAGAGAAAACGGTTGAATGTGATGCTGATCTTTACATTTTGGATGCGGCTGAGGAAAGTGGGCTTGATCTTCCTTACTCTTGCAGAGCTGGGGCTTGTTCTTCATGCGTTGGGAAAGTGGTATCAGGGAAATTGGATCAATCTGATCAGAGTTTTCTTGATGATGAGCAAGTGGCTGAAGGTTGGGTTTTAACTTGTGTTGCTAGGCCTGAGTCTGATCTTGTAATTGAGACTCACAAGGAGGATTCCTTTGCTGGTTAA ATGAGCAGCACCACTGCAATCACCTCCCCATTTCCGGCCACCTCCTTCATCCGTCGGAATCCTACCGGTGGAGTGAGTTTCAAGCCATTTCCCAACATGGGTGAGTCTCTGTACGGGCTGAAACACCGCGGCGGACGACTGGCGATGAAGGCATACAAGGTGAAACTCATAACCCCAGATGGAGAGAAAACGGTTGAATGTGATGCTGATCTTTACATTTTGGATGCGGCTGAGGAAAGTGGGCTTGATCTTCCTTACTCTTGCAGAGCTGGGGCTTGTTCTTCATGCGTTGGGAAAGTGGTATCAGGGAAATTGGATCAATCTGATCAGAGTTTTCTTGATGATGAGCAAGTGGCTGAAGGTTGGGTTTTAACTTGTGTTGCTAGGCCTGAGTCTGATCTTGTAATTGAGACTCACAAGGAGGATTCCTTTGCTGGTTAA MSSTTAITSPFPATSFIRRNPTGGVSFKPFPNMGESLYGLKHRGGRLAMKAYKVKLITPDGEKTVECDADLYILDAAEESGLDLPYSCRAGACSSCVGKVVSGKLDQSDQSFLDDEQVAEGWVLTCVARPESDLVIETHKEDSFAG*
BLAST of Csa3G222800.1 vs. Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1) HSP 1 Score: 182.6 bits (462), Expect = 3.2e-45 Identity = 94/146 (64.38%), Postives = 116/146 (79.45%), Query Frame = 1
BLAST of Csa3G222800.1 vs. Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1) HSP 1 Score: 180.6 bits (457), Expect = 1.2e-44 Identity = 92/145 (63.45%), Postives = 112/145 (77.24%), Query Frame = 1
BLAST of Csa3G222800.1 vs. Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1) HSP 1 Score: 166.0 bits (419), Expect = 3.1e-40 Identity = 81/143 (56.64%), Postives = 104/143 (72.73%), Query Frame = 1
BLAST of Csa3G222800.1 vs. Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 2.2e-38 Identity = 78/144 (54.17%), Postives = 102/144 (70.83%), Query Frame = 1
BLAST of Csa3G222800.1 vs. Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2) HSP 1 Score: 159.5 bits (402), Expect = 2.9e-38 Identity = 79/142 (55.63%), Postives = 96/142 (67.61%), Query Frame = 1
BLAST of Csa3G222800.1 vs. TrEMBL
Match: A0A0A0L764_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G222800 PE=4 SV=1) HSP 1 Score: 298.9 bits (764), Expect = 3.4e-78 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1
BLAST of Csa3G222800.1 vs. TrEMBL
Match: A0A067L2U1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04972 PE=4 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 4.9e-45 Identity = 92/142 (64.79%), Postives = 116/142 (81.69%), Query Frame = 1
BLAST of Csa3G222800.1 vs. TrEMBL
Match: A0A0G2UGP8_9ROSA (Leaf L-A-like ferredoxin OS=Pyrus betulifolia GN=FD1 PE=2 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 4.2e-44 Identity = 90/146 (61.64%), Postives = 115/146 (78.77%), Query Frame = 1
BLAST of Csa3G222800.1 vs. TrEMBL
Match: A0A0B2PB52_GLYSO (Ferredoxin, chloroplastic OS=Glycine soja GN=glysoja_010835 PE=4 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43 Identity = 88/143 (61.54%), Postives = 112/143 (78.32%), Query Frame = 1
BLAST of Csa3G222800.1 vs. TrEMBL
Match: I1K498_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G168400 PE=4 SV=1) HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43 Identity = 88/143 (61.54%), Postives = 112/143 (78.32%), Query Frame = 1
BLAST of Csa3G222800.1 vs. TAIR10
Match: AT1G10960.1 (AT1G10960.1 ferredoxin 1) HSP 1 Score: 182.6 bits (462), Expect = 1.8e-46 Identity = 94/146 (64.38%), Postives = 116/146 (79.45%), Query Frame = 1
BLAST of Csa3G222800.1 vs. TAIR10
Match: AT1G60950.1 (AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein) HSP 1 Score: 180.6 bits (457), Expect = 6.8e-46 Identity = 92/145 (63.45%), Postives = 112/145 (77.24%), Query Frame = 1
BLAST of Csa3G222800.1 vs. TAIR10
Match: AT2G27510.1 (AT2G27510.1 ferredoxin 3) HSP 1 Score: 131.3 bits (329), Expect = 4.7e-31 Identity = 66/108 (61.11%), Postives = 78/108 (72.22%), Query Frame = 1
BLAST of Csa3G222800.1 vs. TAIR10
Match: AT5G10000.1 (AT5G10000.1 ferredoxin 4) HSP 1 Score: 111.3 bits (277), Expect = 5.1e-25 Identity = 52/99 (52.53%), Postives = 74/99 (74.75%), Query Frame = 1
BLAST of Csa3G222800.1 vs. TAIR10
Match: AT4G14890.1 (AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein) HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13 Identity = 41/99 (41.41%), Postives = 57/99 (57.58%), Query Frame = 1
BLAST of Csa3G222800.1 vs. NCBI nr
Match: gi|449457045|ref|XP_004146259.1| (PREDICTED: ferredoxin, leaf L-A-like [Cucumis sativus]) HSP 1 Score: 298.9 bits (764), Expect = 4.9e-78 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1
BLAST of Csa3G222800.1 vs. NCBI nr
Match: gi|659112074|ref|XP_008456052.1| (PREDICTED: ferredoxin-like [Cucumis melo]) HSP 1 Score: 259.2 bits (661), Expect = 4.3e-66 Identity = 122/146 (83.56%), Postives = 133/146 (91.10%), Query Frame = 1
BLAST of Csa3G222800.1 vs. NCBI nr
Match: gi|802591910|ref|XP_012071291.1| (PREDICTED: ferredoxin-A-like [Jatropha curcas]) HSP 1 Score: 188.7 bits (478), Expect = 7.1e-45 Identity = 92/142 (64.79%), Postives = 116/142 (81.69%), Query Frame = 1
BLAST of Csa3G222800.1 vs. NCBI nr
Match: gi|694328938|ref|XP_009355250.1| (PREDICTED: ferredoxin, leaf L-A-like [Pyrus x bretschneideri]) HSP 1 Score: 185.7 bits (470), Expect = 6.0e-44 Identity = 90/146 (61.64%), Postives = 115/146 (78.77%), Query Frame = 1
BLAST of Csa3G222800.1 vs. NCBI nr
Match: gi|568833694|ref|XP_006471012.1| (PREDICTED: ferredoxin [Citrus sinensis]) HSP 1 Score: 184.5 bits (467), Expect = 1.3e-43 Identity = 92/142 (64.79%), Postives = 112/142 (78.87%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
|