Csa3G187280.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGGAATCAGTATAACTTTCCCGTTTTCTTAATATCTGAGAGCAGCATTTCGTCTATACAAGAAGTAATTCTGATTCTTAAACGCTTAAAACTTTAAACTCTAAGTTGTTTCAATTACTATACAACAGTTTGGCTCAGTTGCTATATGCTTCTCTCTGGAATTGAATTTTTATTTTGACTTGTCTAAATGGTACCTCTTAGATGTTCTTTAATGGTGCACATGCCCTATTTGTCATTAAAATAAGGTCATATTGTGCTTTTATAATTCTTATAAAATGTTACACAGAGGGCTTTGCATCATCTTTTTTCCTATAAAATCATCTTGTTTCTGATTTCTTGGTTTGGTTAGGGAGCTTGGTGTCCTTTTCATTTGGGTTTTGTCGTTTTTTGTTCAATAGAAAAACAATGGAGGTTGCCTCTATGTATCTTACTTGATGAGTAAGAGTTCAGTTTTAGGTTGGGAAGAAGGGGTAGTCGTGTTTGGAATCCTAATCCTCTCGAGGGTATTTCTTGTAGATCTTTTTTATGGTTGTTGTTGGATCCTTCTCCTGCTATTGAGCCGGTCTTTGATGTGCTTTGGAGGGTTAAGGTCCCTAAAAAAGTTAAGTTCTTTACTTGGGTGTGTGAACTCTCTGGATAAGCTTTTGAGGAAGAAGTGTACAGTTATGGGGCATTTCTGTTCTATTTTTTGCTGGAAGACCTGGATCACCTTCTCTAGAGTTGTCAGTTTACGTGAGTGGTGTGCAATTGTTTCTTTCAAGAGTTGATCCGAGTGCTTGGGTGACGATTGAGGAGTTTCTTCTCCATATGCCTTTCAAGGAGAAAGCTTGATCTTTATTGAGGATATCTAGAGGCAAAGAAACAATAGAGTGTAAAGGTGTGGAGAGGGACCATGGTGATGTTTGATCCTTGCTGAGGTTCCATGTTTCTCTATGGGAACCTGTTTCAAAGACGTTTTGTGATTATCCTCTAGGTAGTATCTTAGCTAGAAACCCTTTCTTTAGAGGGGTATTGTGGACTTGGTTTTTGTGGCCCTTGTATTATTTCATTTTTTTTCTCGACGAAAATAGTTGTTTTTATTAGAAAAAAAGAATCTACTGTTACAGATCATGATTCTATGTTGATTTATGTGCTCCCGTAGCTTTATTTTGCTTGATTAGATGCCCTTCTTTTAGGTTGCGTCCTTTTTTTGGGACTTTTCTTCTTTTCTTCTTCTTAATGTTTATTATTATTATTATTCTTTTAAGTGTGGTTATTGATCACAAAGCTGAAACACAGTGTGATAAGCAAAAAGTAGAAATGTTTTTGAACAAGTGCATTTTTACCAGGGTGGAAATTCATTGATGTTTTACAATTTTGTTTTCATAATGAACAAAAAGAGGATACCTTTAGTTTATATATTTTTTTAAGGTACAGTACTTATGGTGGTATAAACAAGGACATCATTTTTGATTTATGGTTGATGCTTCTTTTGTAATTGACCATAAGTTTGATCCAGTTAAATGCTTTCATGCTTAATATCAATTATGTGAATAACTATGACTAAAATAATTTATTTTGTTGCGTAAACTTACCACTTGATGCAGGCTGCTTCAAAAAATGTGAAGAGTAAGAAAGATTACATATCTAATGTTGCTGAATTTGATCTGGTGATGCAGGTACTTAGTTTTGGTGTTACATTATGATTTTGTTTCATTGATTTTATATCTTAAATGTGTTATTTATTTACTCACAGTTTGCAAGGTCTGTGTGATTGTTTTTTTCATCTTTCCCTAGACAACTAAGGCTGGAACTCATAGTTCAATGTCTTGTTTGAAAGAAGAAACATGCCTTCCATTAGGTGGATACAGGTTAGTTTTACTTGAATCTTTCTGTCTCCACATAATTTCGCACTGTTTATTTTATTAAAAGAGATCAGTATCGTTACAGTGTTTGGTCATCACTTCCCCCAATCAACACTTCTTCCTCAGATCAGTCTAAGCCTGTCATTCTCACGGTAGCTTCCATGGATTCGGCCTCTTTCTTCCGTGATAAAAGCATTGGTGCTGACTCCCCCATCTCTGTATGATTTATTTTGAGCATGTATATCAGTCATAACTCTTACCTTGTTTGTTCTGCTACCCGTTAAAGCTTTTTTTGGTACATTTTAGGGCCTGATTGCGTTGCTGGCTGCAGTTGATGCACTTTCCCATGTGGATGGGTTGGACGATCTTCATAAACAGGTTCTTATTGAAGCTGTTTTCTTTGTATATAATTGCACTTTCCTTATATTAAGAGCTTCCTAA ATGTGGAATCAGTATAACTTTCCCGTTTTCTTAATATCTGAGAGCAGCATTTCGTCTATACAAGAAGCTGCTTCAAAAAATGTGAAGAGTAAGAAAGATTACATATCTAATGTTGCTGAATTTGATCTGGTGATGCAGACAACTAAGGCTGGAACTCATAGTTCAATGTCTTGTTTGAAAGAAGAAACATGCCTTCCATTAGGTGGATACAGTGTTTGGTCATCACTTCCCCCAATCAACACTTCTTCCTCAGATCAGTCTAAGCCTGTCATTCTCACGGTAGCTTCCATGGATTCGGCCTCTTTCTTCCGTGATAAAAGCATTGGTGCTGACTCCCCCATCTCTGGCCTGATTGCGTTGCTGGCTGCAGTTGATGCACTTTCCCATGTGGATGGGTTGGACGATCTTCATAAACAGGTTCTTATTGAAGCTGTTTTCTTTGTATATAATTGCACTTTCCTTATATTAAGAGCTTCCTAA ATGTGGAATCAGTATAACTTTCCCGTTTTCTTAATATCTGAGAGCAGCATTTCGTCTATACAAGAAGCTGCTTCAAAAAATGTGAAGAGTAAGAAAGATTACATATCTAATGTTGCTGAATTTGATCTGGTGATGCAGACAACTAAGGCTGGAACTCATAGTTCAATGTCTTGTTTGAAAGAAGAAACATGCCTTCCATTAGGTGGATACAGTGTTTGGTCATCACTTCCCCCAATCAACACTTCTTCCTCAGATCAGTCTAAGCCTGTCATTCTCACGGTAGCTTCCATGGATTCGGCCTCTTTCTTCCGTGATAAAAGCATTGGTGCTGACTCCCCCATCTCTGGCCTGATTGCGTTGCTGGCTGCAGTTGATGCACTTTCCCATGTGGATGGGTTGGACGATCTTCATAAACAGGTTCTTATTGAAGCTGTTTTCTTTGTATATAATTGCACTTTCCTTATATTAAGAGCTTCCTAA MWNQYNFPVFLISESSISSIQEAASKNVKSKKDYISNVAEFDLVMQTTKAGTHSSMSCLKEETCLPLGGYSVWSSLPPINTSSSDQSKPVILTVASMDSASFFRDKSIGADSPISGLIALLAAVDALSHVDGLDDLHKQVLIEAVFFVYNCTFLILRAS*
BLAST of Csa3G187280.1 vs. Swiss-Prot
Match: NICA_ARATH (Nicastrin OS=Arabidopsis thaliana GN=At3g52640/At3g52650 PE=2 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 9.4e-51 Identity = 97/141 (68.79%), Postives = 115/141 (81.56%), Query Frame = 1
BLAST of Csa3G187280.1 vs. Swiss-Prot
Match: NICA_DICDI (Nicastrin OS=Dictyostelium discoideum GN=ncstn PE=3 SV=2) HSP 1 Score: 68.2 bits (165), Expect = 9.5e-11 Identity = 43/127 (33.86%), Postives = 65/127 (51.18%), Query Frame = 1
BLAST of Csa3G187280.1 vs. Swiss-Prot
Match: NICA_RAT (Nicastrin OS=Rattus norvegicus GN=Ncstn PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 4.4e-08 Identity = 42/162 (25.93%), Postives = 76/162 (46.91%), Query Frame = 1
BLAST of Csa3G187280.1 vs. Swiss-Prot
Match: NICA_MOUSE (Nicastrin OS=Mus musculus GN=Ncstn PE=1 SV=3) HSP 1 Score: 58.5 bits (140), Expect = 7.5e-08 Identity = 42/162 (25.93%), Postives = 75/162 (46.30%), Query Frame = 1
BLAST of Csa3G187280.1 vs. Swiss-Prot
Match: NICA_HUMAN (Nicastrin OS=Homo sapiens GN=NCSTN PE=1 SV=2) HSP 1 Score: 58.2 bits (139), Expect = 9.9e-08 Identity = 40/160 (25.00%), Postives = 74/160 (46.25%), Query Frame = 1
BLAST of Csa3G187280.1 vs. TrEMBL
Match: A0A0A0L8Z5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G187280 PE=4 SV=1) HSP 1 Score: 312.8 bits (800), Expect = 2.5e-82 Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1
BLAST of Csa3G187280.1 vs. TrEMBL
Match: D7TSK0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g00380 PE=4 SV=1) HSP 1 Score: 232.3 bits (591), Expect = 4.2e-58 Identity = 116/149 (77.85%), Postives = 132/149 (88.59%), Query Frame = 1
BLAST of Csa3G187280.1 vs. TrEMBL
Match: A0A0D2TXR1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G304200 PE=4 SV=1) HSP 1 Score: 230.7 bits (587), Expect = 1.2e-57 Identity = 114/149 (76.51%), Postives = 132/149 (88.59%), Query Frame = 1
BLAST of Csa3G187280.1 vs. TrEMBL
Match: A0A0D2TUA9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G304200 PE=4 SV=1) HSP 1 Score: 230.7 bits (587), Expect = 1.2e-57 Identity = 114/149 (76.51%), Postives = 132/149 (88.59%), Query Frame = 1
BLAST of Csa3G187280.1 vs. TrEMBL
Match: A0A0D2UWB7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G304200 PE=4 SV=1) HSP 1 Score: 230.7 bits (587), Expect = 1.2e-57 Identity = 114/149 (76.51%), Postives = 132/149 (88.59%), Query Frame = 1
BLAST of Csa3G187280.1 vs. TAIR10
Match: AT3G52640.2 (AT3G52640.2 Zn-dependent exopeptidases superfamily protein) HSP 1 Score: 201.1 bits (510), Expect = 5.3e-52 Identity = 97/141 (68.79%), Postives = 115/141 (81.56%), Query Frame = 1
BLAST of Csa3G187280.1 vs. NCBI nr
Match: gi|700202321|gb|KGN57454.1| (hypothetical protein Csa_3G187280 [Cucumis sativus]) HSP 1 Score: 312.8 bits (800), Expect = 3.5e-82 Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1
BLAST of Csa3G187280.1 vs. NCBI nr
Match: gi|449445945|ref|XP_004140732.1| (PREDICTED: nicastrin [Cucumis sativus]) HSP 1 Score: 276.9 bits (707), Expect = 2.2e-71 Identity = 143/146 (97.95%), Postives = 144/146 (98.63%), Query Frame = 1
BLAST of Csa3G187280.1 vs. NCBI nr
Match: gi|659114563|ref|XP_008457115.1| (PREDICTED: nicastrin isoform X1 [Cucumis melo]) HSP 1 Score: 273.5 bits (698), Expect = 2.4e-70 Identity = 137/141 (97.16%), Postives = 141/141 (100.00%), Query Frame = 1
BLAST of Csa3G187280.1 vs. NCBI nr
Match: gi|659114565|ref|XP_008457117.1| (PREDICTED: nicastrin isoform X2 [Cucumis melo]) HSP 1 Score: 273.5 bits (698), Expect = 2.4e-70 Identity = 137/141 (97.16%), Postives = 141/141 (100.00%), Query Frame = 1
BLAST of Csa3G187280.1 vs. NCBI nr
Match: gi|225451381|ref|XP_002264144.1| (PREDICTED: nicastrin [Vitis vinifera]) HSP 1 Score: 232.3 bits (591), Expect = 6.1e-58 Identity = 116/149 (77.85%), Postives = 132/149 (88.59%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
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