Cla000620 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000620
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ty3-gypsy retrotransposon protein (AHRD V1 ***- E5GCP6_CUCME)
Location	Chr3 : 14169515 .. 14169805 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGAGAAGGAACAAGGTTTTGTTGTCGCAGAGAACATCTGGAAGCGGTTGATAGAATCTCCTAAAGGCGGGATTGTCATCAAAGAAAATCCTTTGTTCGACAGCTCTGCTCCTACTTCTGATCGCTCCAAGAAAGAATCACATCCTGATGTTATGTCTGTCATGATGGCTGATGTAACAGCGGAGGCAGCCATGGCAAAGATGGAGAGAAAAATAGATCTTCTAATGAAAGTTGTCGATGAGCAAGATCATGAGATTGTTGCCTTAAGAGAGCAGATGCAGGCTTGA

mRNA sequence

ATGCAGGAGAAGGAACAAGGTTTTGTTGTCGCAGAGAACATCTGGAAGCGGTTGATAGAATCTCCTAAAGGCGGGATTGTCATCAAAGAAAATCCTTTGTTCGACAGCTCTGCTCCTACTTCTGATCGCTCCAAGAAAGAATCACATCCTGATGTTATGTCTGTCATGATGGCTGATGTAACAGCGGAGGCAGCCATGGCAAAGATGGAGAGAAAAATAGATCTTCTAATGAAAGTTGTCGATGAGCAAGATCATGAGATTGTTGCCTTAAGAGAGCAGATGCAGGCTTGA

Coding sequence (CDS)

ATGCAGGAGAAGGAACAAGGTTTTGTTGTCGCAGAGAACATCTGGAAGCGGTTGATAGAATCTCCTAAAGGCGGGATTGTCATCAAAGAAAATCCTTTGTTCGACAGCTCTGCTCCTACTTCTGATCGCTCCAAGAAAGAATCACATCCTGATGTTATGTCTGTCATGATGGCTGATGTAACAGCGGAGGCAGCCATGGCAAAGATGGAGAGAAAAATAGATCTTCTAATGAAAGTTGTCGATGAGCAAGATCATGAGATTGTTGCCTTAAGAGAGCAGATGCAGGCTTGA

Protein sequence

MQEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADVTAEAAMAKMERKIDLLMKVVDEQDHEIVALREQMQA

Homology

[Close]

BLAST of Cla000620 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.5e-26
Identity = 62/96 (64.58%), Postives = 83/96 (86.46%), Query Frame = 1


Query: 1  MQEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADV 60
          MQE+EQGFV+ +   ++LIES KGGI+I++NPLF++S PTS+ S KESH +V+SVMM DV
Sbjct: 1  MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDV 60

Query: 61 TAEAAMAKMERKIDLLMKVVDEQDHEIVALREQMQA 97
          TAEA MA+ME+KI+ LMKVV+E+DHEI AL++QM+A
Sbjct: 61 TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKA 96

[Close]

BLAST of Cla000620 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.8e-25
Identity = 58/95 (61.05%), Postives = 80/95 (84.21%), Query Frame = 1


Query: 2   QEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADVT 61
           QE+EQGFV+ +   ++LIESPKGGI+I++NPLF++S P S+ S K SH +V+SVMM DVT
Sbjct: 33  QEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNSTPASNLSDKASHLEVVSVMMVDVT 92

Query: 62  AEAAMAKMERKIDLLMKVVDEQDHEIVALREQMQA 97
           AEA + +MERKI+ LMKV++E+DHEI AL++QM+A
Sbjct: 93  AEATVTEMERKINFLMKVIEERDHEIAALKDQMKA 127

[Close]

BLAST of Cla000620 vs. TrEMBL
Match: E5GCE3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.0e-23
Identity = 57/96 (59.38%), Postives = 76/96 (79.17%), Query Frame = 1


Query: 1   MQEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADV 60
           +QE+EQ  V+ +  W++LIESPKGGI I+ENPLF++S P S+ S KESH +V+SV+MA V
Sbjct: 30  IQEQEQSSVLKKKSWEQLIESPKGGINIRENPLFNNSTPASNLSDKESHLEVVSVIMAAV 89

Query: 61  TAEAAMAKMERKIDLLMKVVDEQDHEIVALREQMQA 97
           TAE  M +MERKI+ LMK V ++DHEI AL +QM+A
Sbjct: 90  TAETTMVEMERKINFLMKAVKDRDHEITALEDQMKA 125

[Close]

BLAST of Cla000620 vs. TrEMBL
Match: E5GCM2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.2e-21
Identity = 52/89 (58.43%), Postives = 71/89 (79.78%), Query Frame = 1


Query: 2   QEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADVT 61
           Q++EQ  V+A+  W++L+ESPK GI+IKENPLF+ S P S+ S+KESH +V+S+MMADVT
Sbjct: 31  QKQEQNSVLAKKSWEQLMESPKCGIIIKENPLFEDSTPASNLSEKESHLEVVSIMMADVT 90

Query: 62  AEAAMAKMERKIDLLMKVVDEQDHEIVAL 91
            EA M +ME KI+ LMKVV+E+D+ I  L
Sbjct: 91  VEAVMVEMEMKINFLMKVVEERDYGITVL 119

[Close]

BLAST of Cla000620 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14
Identity = 41/91 (45.05%), Postives = 68/91 (74.73%), Query Frame = 1


Query: 8   FVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKES-HPDVMSVMMADV-TAEAA 67
           F VA+NIW+++ + PKGGI+IKENP  D     S+ S +E+  P++MSVM+ DV T+EA 
Sbjct: 36  FEVAKNIWEQISKPPKGGIIIKENPAIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEAR 95

Query: 68  MAKMERKIDLLMKVVDEQDHEIVALREQMQA 97
           M ++E+K+++LMK V+E+D +I +L+  +++
Sbjct: 96  MVELEKKVNMLMKAVEERDFKIASLKNHIES 126

[Close]

BLAST of Cla000620 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 126.7 bits (317), Expect = 2.2e-26
Identity = 62/96 (64.58%), Postives = 83/96 (86.46%), Query Frame = 1


Query: 1  MQEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADV 60
          MQE+EQGFV+ +   ++LIES KGGI+I++NPLF++S PTS+ S KESH +V+SVMM DV
Sbjct: 1  MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDV 60

Query: 61 TAEAAMAKMERKIDLLMKVVDEQDHEIVALREQMQA 97
          TAEA MA+ME+KI+ LMKVV+E+DHEI AL++QM+A
Sbjct: 61 TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKA 96

[Close]

BLAST of Cla000620 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 122.5 bits (306), Expect = 4.1e-25
Identity = 58/95 (61.05%), Postives = 80/95 (84.21%), Query Frame = 1


Query: 2   QEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADVT 61
           QE+EQGFV+ +   ++LIESPKGGI+I++NPLF++S P S+ S K SH +V+SVMM DVT
Sbjct: 33  QEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNSTPASNLSDKASHLEVVSVMMVDVT 92

Query: 62  AEAAMAKMERKIDLLMKVVDEQDHEIVALREQMQA 97
           AEA + +MERKI+ LMKV++E+DHEI AL++QM+A
Sbjct: 93  AEATVTEMERKINFLMKVIEERDHEIAALKDQMKA 127

[Close]

BLAST of Cla000620 vs. NCBI nr
Match: gi|307136319|gb|ADN34142.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 116.3 bits (290), Expect = 2.9e-23
Identity = 57/96 (59.38%), Postives = 76/96 (79.17%), Query Frame = 1


Query: 1   MQEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADV 60
           +QE+EQ  V+ +  W++LIESPKGGI I+ENPLF++S P S+ S KESH +V+SV+MA V
Sbjct: 30  IQEQEQSSVLKKKSWEQLIESPKGGINIRENPLFNNSTPASNLSDKESHLEVVSVIMAAV 89

Query: 61  TAEAAMAKMERKIDLLMKVVDEQDHEIVALREQMQA 97
           TAE  M +MERKI+ LMK V ++DHEI AL +QM+A
Sbjct: 90  TAETTMVEMERKINFLMKAVKDRDHEITALEDQMKA 125

[Close]

BLAST of Cla000620 vs. NCBI nr
Match: gi|659118742|ref|XP_008459280.1| (PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-22
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 1


Query: 12 ENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADVTAEAAMAKMER 71
          ++I K+L+ SPK GI IKENPL+D+      + KKE+HPDVMSVMM D+TAEAAM +MER
Sbjct: 2  QSILKQLMLSPKAGIFIKENPLYDNFDSALSKLKKEAHPDVMSVMMVDITAEAAMTEMER 61

Query: 72 KIDLLMKVVDEQDHEIVALREQMQ 96
          KI+L+MKVV EQDH+I ALREQMQ
Sbjct: 62 KINLVMKVVKEQDHKITALREQMQ 85

[Close]

BLAST of Cla000620 vs. NCBI nr
Match: gi|307136413|gb|ADN34221.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 108.6 bits (270), Expect = 6.1e-21
Identity = 52/89 (58.43%), Postives = 71/89 (79.78%), Query Frame = 1


Query: 2   QEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADVT 61
           Q++EQ  V+A+  W++L+ESPK GI+IKENPLF+ S P S+ S+KESH +V+S+MMADVT
Sbjct: 31  QKQEQNSVLAKKSWEQLMESPKCGIIIKENPLFEDSTPASNLSEKESHLEVVSIMMADVT 90

Query: 62  AEAAMAKMERKIDLLMKVVDEQDHEIVAL 91
            EA M +ME KI+ LMKVV+E+D+ I  L
Sbjct: 91  VEAVMVEMEMKINFLMKVVEERDYGITVL 119

The following BLAST results are available for this feature:

BLAST of Cla000620 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB67_CUCME	1.5e-26	64.58	Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCP6_CUCME	2.8e-25	61.05	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCE3_CUCME	2.0e-23	59.38	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCM2_CUCME	4.2e-21	58.43	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBB0_CUCME	1.3e-14	45.05	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla000620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135838\|gb\|ADN33709.1\|	2.2e-26	64.58	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]
gi\|307136441\|gb\|ADN34247.1\|	4.1e-25	61.05	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|307136319\|gb\|ADN34142.1\|	2.9e-23	59.38	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659118742\|ref\|XP_008459280.1\|	2.5e-22	66.67	PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo]	[more]
gi\|307136413\|gb\|ADN34221.1\|	6.1e-21	58.43	hypothetical protein [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla000620	Cla000620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 66..96 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla000620	Cucumber (Gy14) v2	cgybwmB021
Cla000620	Melon (DHL92) v3.6.1	medwmB261
Cla000620	Watermelon (97103) v2	wmwmbB126
Cla000620	Cucumber (Gy14) v1	cgywmB713
Cla000620	Melon (DHL92) v3.5.1	mewmB270
Cla000620	Watermelon (Charleston Gray)	wcgwmB225
Cla000620	Cucumber (Chinese Long) v2	cuwmB018