Cla000620.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla000620
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ty3-gypsy retrotransposon protein (AHRD V1 ***- E5GCP6_CUCME)
Location	Chr3 : 14169515 .. 14169805 (-)
Sequence length	291

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGAGAAGGAACAAGGTTTTGTTGTCGCAGAGAACATCTGGAAGCGGTTGATAGAATCTCCTAAAGGCGGGATTGTCATCAAAGAAAATCCTTTGTTCGACAGCTCTGCTCCTACTTCTGATCGCTCCAAGAAAGAATCACATCCTGATGTTATGTCTGTCATGATGGCTGATGTAACAGCGGAGGCAGCCATGGCAAAGATGGAGAGAAAAATAGATCTTCTAATGAAAGTTGTCGATGAGCAAGATCATGAGATTGTTGCCTTAAGAGAGCAGATGCAGGCTTGA

mRNA sequence

ATGCAGGAGAAGGAACAAGGTTTTGTTGTCGCAGAGAACATCTGGAAGCGGTTGATAGAATCTCCTAAAGGCGGGATTGTCATCAAAGAAAATCCTTTGTTCGACAGCTCTGCTCCTACTTCTGATCGCTCCAAGAAAGAATCACATCCTGATGTTATGTCTGTCATGATGGCTGATGTAACAGCGGAGGCAGCCATGGCAAAGATGGAGAGAAAAATAGATCTTCTAATGAAAGTTGTCGATGAGCAAGATCATGAGATTGTTGCCTTAAGAGAGCAGATGCAGGCTTGA

Coding sequence (CDS)

ATGCAGGAGAAGGAACAAGGTTTTGTTGTCGCAGAGAACATCTGGAAGCGGTTGATAGAATCTCCTAAAGGCGGGATTGTCATCAAAGAAAATCCTTTGTTCGACAGCTCTGCTCCTACTTCTGATCGCTCCAAGAAAGAATCACATCCTGATGTTATGTCTGTCATGATGGCTGATGTAACAGCGGAGGCAGCCATGGCAAAGATGGAGAGAAAAATAGATCTTCTAATGAAAGTTGTCGATGAGCAAGATCATGAGATTGTTGCCTTAAGAGAGCAGATGCAGGCTTGA

Protein sequence

MQEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADVTAEAAMAKMERKIDLLMKVVDEQDHEIVALREQMQA

Homology

[Close]

BLAST of Cla000620 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.5e-26
Identity = 62/96 (64.58%), Postives = 83/96 (86.46%), Query Frame = 1


Query: 1  MQEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADV 60
          MQE+EQGFV+ +   ++LIES KGGI+I++NPLF++S PTS+ S KESH +V+SVMM DV
Sbjct: 1  MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDV 60

Query: 61 TAEAAMAKMERKIDLLMKVVDEQDHEIVALREQMQA 97
          TAEA MA+ME+KI+ LMKVV+E+DHEI AL++QM+A
Sbjct: 61 TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKA 96

[Close]

BLAST of Cla000620 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.8e-25
Identity = 58/95 (61.05%), Postives = 80/95 (84.21%), Query Frame = 1


Query: 2   QEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADVT 61
           QE+EQGFV+ +   ++LIESPKGGI+I++NPLF++S P S+ S K SH +V+SVMM DVT
Sbjct: 33  QEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNSTPASNLSDKASHLEVVSVMMVDVT 92

Query: 62  AEAAMAKMERKIDLLMKVVDEQDHEIVALREQMQA 97
           AEA + +MERKI+ LMKV++E+DHEI AL++QM+A
Sbjct: 93  AEATVTEMERKINFLMKVIEERDHEIAALKDQMKA 127

[Close]

BLAST of Cla000620 vs. TrEMBL
Match: E5GCE3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.0e-23
Identity = 57/96 (59.38%), Postives = 76/96 (79.17%), Query Frame = 1


Query: 1   MQEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADV 60
           +QE+EQ  V+ +  W++LIESPKGGI I+ENPLF++S P S+ S KESH +V+SV+MA V
Sbjct: 30  IQEQEQSSVLKKKSWEQLIESPKGGINIRENPLFNNSTPASNLSDKESHLEVVSVIMAAV 89

Query: 61  TAEAAMAKMERKIDLLMKVVDEQDHEIVALREQMQA 97
           TAE  M +MERKI+ LMK V ++DHEI AL +QM+A
Sbjct: 90  TAETTMVEMERKINFLMKAVKDRDHEITALEDQMKA 125

[Close]

BLAST of Cla000620 vs. TrEMBL
Match: E5GCM2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.2e-21
Identity = 52/89 (58.43%), Postives = 71/89 (79.78%), Query Frame = 1


Query: 2   QEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADVT 61
           Q++EQ  V+A+  W++L+ESPK GI+IKENPLF+ S P S+ S+KESH +V+S+MMADVT
Sbjct: 31  QKQEQNSVLAKKSWEQLMESPKCGIIIKENPLFEDSTPASNLSEKESHLEVVSIMMADVT 90

Query: 62  AEAAMAKMERKIDLLMKVVDEQDHEIVAL 91
            EA M +ME KI+ LMKVV+E+D+ I  L
Sbjct: 91  VEAVMVEMEMKINFLMKVVEERDYGITVL 119

[Close]

BLAST of Cla000620 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14
Identity = 41/91 (45.05%), Postives = 68/91 (74.73%), Query Frame = 1


Query: 8   FVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKES-HPDVMSVMMADV-TAEAA 67
           F VA+NIW+++ + PKGGI+IKENP  D     S+ S +E+  P++MSVM+ DV T+EA 
Sbjct: 36  FEVAKNIWEQISKPPKGGIIIKENPAIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEAR 95

Query: 68  MAKMERKIDLLMKVVDEQDHEIVALREQMQA 97
           M ++E+K+++LMK V+E+D +I +L+  +++
Sbjct: 96  MVELEKKVNMLMKAVEERDFKIASLKNHIES 126

[Close]

BLAST of Cla000620 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 126.7 bits (317), Expect = 2.2e-26
Identity = 62/96 (64.58%), Postives = 83/96 (86.46%), Query Frame = 1


Query: 1  MQEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADV 60
          MQE+EQGFV+ +   ++LIES KGGI+I++NPLF++S PTS+ S KESH +V+SVMM DV
Sbjct: 1  MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDV 60

Query: 61 TAEAAMAKMERKIDLLMKVVDEQDHEIVALREQMQA 97
          TAEA MA+ME+KI+ LMKVV+E+DHEI AL++QM+A
Sbjct: 61 TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKA 96

[Close]

BLAST of Cla000620 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 122.5 bits (306), Expect = 4.1e-25
Identity = 58/95 (61.05%), Postives = 80/95 (84.21%), Query Frame = 1


Query: 2   QEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADVT 61
           QE+EQGFV+ +   ++LIESPKGGI+I++NPLF++S P S+ S K SH +V+SVMM DVT
Sbjct: 33  QEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNSTPASNLSDKASHLEVVSVMMVDVT 92

Query: 62  AEAAMAKMERKIDLLMKVVDEQDHEIVALREQMQA 97
           AEA + +MERKI+ LMKV++E+DHEI AL++QM+A
Sbjct: 93  AEATVTEMERKINFLMKVIEERDHEIAALKDQMKA 127

[Close]

BLAST of Cla000620 vs. NCBI nr
Match: gi|307136319|gb|ADN34142.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 116.3 bits (290), Expect = 2.9e-23
Identity = 57/96 (59.38%), Postives = 76/96 (79.17%), Query Frame = 1


Query: 1   MQEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADV 60
           +QE+EQ  V+ +  W++LIESPKGGI I+ENPLF++S P S+ S KESH +V+SV+MA V
Sbjct: 30  IQEQEQSSVLKKKSWEQLIESPKGGINIRENPLFNNSTPASNLSDKESHLEVVSVIMAAV 89

Query: 61  TAEAAMAKMERKIDLLMKVVDEQDHEIVALREQMQA 97
           TAE  M +MERKI+ LMK V ++DHEI AL +QM+A
Sbjct: 90  TAETTMVEMERKINFLMKAVKDRDHEITALEDQMKA 125

[Close]

BLAST of Cla000620 vs. NCBI nr
Match: gi|659118742|ref|XP_008459280.1| (PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-22
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 1


Query: 12 ENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADVTAEAAMAKMER 71
          ++I K+L+ SPK GI IKENPL+D+      + KKE+HPDVMSVMM D+TAEAAM +MER
Sbjct: 2  QSILKQLMLSPKAGIFIKENPLYDNFDSALSKLKKEAHPDVMSVMMVDITAEAAMTEMER 61

Query: 72 KIDLLMKVVDEQDHEIVALREQMQ 96
          KI+L+MKVV EQDH+I ALREQMQ
Sbjct: 62 KINLVMKVVKEQDHKITALREQMQ 85

[Close]

BLAST of Cla000620 vs. NCBI nr
Match: gi|307136413|gb|ADN34221.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 108.6 bits (270), Expect = 6.1e-21
Identity = 52/89 (58.43%), Postives = 71/89 (79.78%), Query Frame = 1


Query: 2   QEKEQGFVVAENIWKRLIESPKGGIVIKENPLFDSSAPTSDRSKKESHPDVMSVMMADVT 61
           Q++EQ  V+A+  W++L+ESPK GI+IKENPLF+ S P S+ S+KESH +V+S+MMADVT
Sbjct: 31  QKQEQNSVLAKKSWEQLMESPKCGIIIKENPLFEDSTPASNLSEKESHLEVVSIMMADVT 90

Query: 62  AEAAMAKMERKIDLLMKVVDEQDHEIVAL 91
            EA M +ME KI+ LMKVV+E+D+ I  L
Sbjct: 91  VEAVMVEMEMKINFLMKVVEERDYGITVL 119

The following BLAST results are available for this feature:

BLAST of Cla000620 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB67_CUCME	1.5e-26	64.58	Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCP6_CUCME	2.8e-25	61.05	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCE3_CUCME	2.0e-23	59.38	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCM2_CUCME	4.2e-21	58.43	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBB0_CUCME	1.3e-14	45.05	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla000620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135838\|gb\|ADN33709.1\|	2.2e-26	64.58	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]
gi\|307136441\|gb\|ADN34247.1\|	4.1e-25	61.05	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|307136319\|gb\|ADN34142.1\|	2.9e-23	59.38	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659118742\|ref\|XP_008459280.1\|	2.5e-22	66.67	PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo]	[more]
gi\|307136413\|gb\|ADN34221.1\|	6.1e-21	58.43	hypothetical protein [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla000620	Cla000620	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla000620	Cla000620.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla000620.1.cds1	Cla000620.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 66..96 scor