Csa2G223720 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGTTTCCGATGAACCAACGGCGACGTTTCTCCTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGCTTTCGACTTAAATTCCCTCAACCAAACTTCCTCTTCTGATTCAGTTTCTTTCTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATTGTTGGCGTTGTGGTCTTCCGTGACCTGAAACCTAACAGGTTTCTTAAATTCTCCGTTGACGATGGTACTGCCTGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCAAGATGTTCGTATTCTGGGAGATATGGCGACCCATTTCGCAGCTCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTACACCCACTTAGCTGTAGATTCCATGGCTTTAAAATGCCATCTCTAGTCTTCTGATTTCCCTTCTTTTTTTTTCCTTTCTGAAATGCTAAAAAGATTCCACTTTTTGTTATTTACTGTACATAATTTTGCTCAACAGCTTGGCCTTCGAAATGATTATATAATAATATTGAAATTAAGTTGCCTCCACCGA ATGAACCAACGGCGACGTTTCTCCTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGCTTTCGACTTAAATTCCCTCAACCAAACTTCCTCTTCTGATTCAGTTTCTTTCTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATTGTTGGCGTTGTGGTCTTCCGTGACCTGAAACCTAACAGGTTTCTTAAATTCTCCGTTGACGATGGTACTGCCTGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCAAGATGTTCGTATTCTGGGAGATATGGCGACCCATTTCGCAGCTCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTACACCCACTTAG ATGAACCAACGGCGACGTTTCTCCTTCTCCCTCTACCAAACCCATGTCAAGCTTCTTGCTTTCGACTTAAATTCCCTCAACCAAACTTCCTCTTCTGATTCAGTTTCTTTCTCTCGCAAAGGCTATGCCGTTTCCTGTACAGAGATTGTTGGCGTTGTGGTCTTCCGTGACCTGAAACCTAACAGGTTTCTTAAATTCTCCGTTGACGATGGTACTGCCTGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTATTTTGCTTCACGCCATCACCAAGATGTTCGTATTCTGGGAGATATGGCGACCCATTTCGCAGCTCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTACACCCACTTAG MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT*
BLAST of Csa2G223720 vs. Swiss-Prot
Match: STN1_ARATH (CST complex subunit STN1 OS=Arabidopsis thaliana GN=STN1 PE=1 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 4.8e-37 Identity = 84/153 (54.90%), Postives = 102/153 (66.67%), Query Frame = 1
BLAST of Csa2G223720 vs. Swiss-Prot
Match: STN1_BOVIN (CST complex subunit STN1 OS=Bos taurus GN=OBFC1 PE=2 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 5.7e-06 Identity = 41/162 (25.31%), Postives = 72/162 (44.44%), Query Frame = 1
BLAST of Csa2G223720 vs. TrEMBL
Match: A0A0A0LNV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G223720 PE=4 SV=1) HSP 1 Score: 339.3 bits (869), Expect = 2.6e-90 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1
BLAST of Csa2G223720 vs. TrEMBL
Match: A5B811_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0151g00570 PE=4 SV=1) HSP 1 Score: 204.9 bits (520), Expect = 7.7e-50 Identity = 97/161 (60.25%), Postives = 129/161 (80.12%), Query Frame = 1
BLAST of Csa2G223720 vs. TrEMBL
Match: M5VZA5_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020896mg PE=4 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 1.1e-48 Identity = 100/157 (63.69%), Postives = 119/157 (75.80%), Query Frame = 1
BLAST of Csa2G223720 vs. TrEMBL
Match: B9H8B6_POPTR (OB-fold nucleic acid binding domain-containing family protein OS=Populus trichocarpa GN=POPTR_0005s23460g PE=4 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 9.4e-48 Identity = 92/156 (58.97%), Postives = 122/156 (78.21%), Query Frame = 1
BLAST of Csa2G223720 vs. TrEMBL
Match: W9RR47_9ROSA (CST complex subunit STN1 OS=Morus notabilis GN=L484_002048 PE=4 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 1.4e-46 Identity = 97/155 (62.58%), Postives = 117/155 (75.48%), Query Frame = 1
BLAST of Csa2G223720 vs. TAIR10
Match: AT1G07130.1 (AT1G07130.1 Nucleic acid-binding, OB-fold-like protein) HSP 1 Score: 155.6 bits (392), Expect = 2.7e-38 Identity = 84/153 (54.90%), Postives = 102/153 (66.67%), Query Frame = 1
BLAST of Csa2G223720 vs. NCBI nr
Match: gi|449455286|ref|XP_004145384.1| (PREDICTED: CST complex subunit STN1 [Cucumis sativus]) HSP 1 Score: 339.3 bits (869), Expect = 3.7e-90 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1
BLAST of Csa2G223720 vs. NCBI nr
Match: gi|659096884|ref|XP_008449339.1| (PREDICTED: CST complex subunit STN1 [Cucumis melo]) HSP 1 Score: 327.4 bits (838), Expect = 1.5e-86 Identity = 162/168 (96.43%), Postives = 163/168 (97.02%), Query Frame = 1
BLAST of Csa2G223720 vs. NCBI nr
Match: gi|1009182051|ref|XP_015872500.1| (PREDICTED: CST complex subunit STN1 [Ziziphus jujuba]) HSP 1 Score: 208.8 bits (530), Expect = 7.6e-51 Identity = 102/154 (66.23%), Postives = 122/154 (79.22%), Query Frame = 1
BLAST of Csa2G223720 vs. NCBI nr
Match: gi|657954755|ref|XP_008368825.1| (PREDICTED: CST complex subunit STN1 [Malus domestica]) HSP 1 Score: 206.8 bits (525), Expect = 2.9e-50 Identity = 101/158 (63.92%), Postives = 122/158 (77.22%), Query Frame = 1
BLAST of Csa2G223720 vs. NCBI nr
Match: gi|645259484|ref|XP_008235383.1| (PREDICTED: CST complex subunit STN1 [Prunus mume]) HSP 1 Score: 206.1 bits (523), Expect = 4.9e-50 Identity = 102/160 (63.75%), Postives = 123/160 (76.88%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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