Csa2G150520.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa2G150520.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 9028891 .. 9029300 (+)
Sequence length294
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATTGCACAAGTAGCCTCTCAGTACATGTTCCGAAACGTTTTTTGCTTGCGGAGCCGGTTGGTCATTCCCGCTATCTTCGATTGGCTATCTTCTATTGCCTTTCTCCAGCCGCCAGTGCATAGCTACTTTGCTCAACTCGTCAGACTCTTCGCCTATCTCTTAAGAGATCACAGGTGAATCAAATCAAACTCATCAACCAACCTCCACATCTGTGTATCCCTTGCTACAAGTACATTATAGTTAATTGACTTTCCTAGAAGTTTCATGATCAAAGCCATTCGCTTCCCTCAATTCTTTCTTTTGAGCCTAGTCAGTTTCACCATTTTCATACCTTCCATTAGATAAAGATGAACAGATTCAACGTTCTAATGGATAGGACCGAGGCTCATCAAAAACAAGGTTGA

mRNA sequence

ATGGGGATTGCACAAGTAGCCTCTCAGTACATGTTCCGAAACGTTTTTTGCTTGCGGAGCCGGTTGGTCATTCCCGCTATCTTCGATTGGCTATCTTCTATTGCCTTTCTCCAGCCGCCAGTGCATAGCTACTTTGCTCAACTCGTCAGACTCTTCGCCTATCTCTTAAGAGATCACAGAAGTTTCATGATCAAAGCCATTCGCTTCCCTCAATTCTTTCTTTTGAGCCTAATAAAGATGAACAGATTCAACGTTCTAATGGATAGGACCGAGGCTCATCAAAAACAAGGTTGA

Coding sequence (CDS)

ATGGGGATTGCACAAGTAGCCTCTCAGTACATGTTCCGAAACGTTTTTTGCTTGCGGAGCCGGTTGGTCATTCCCGCTATCTTCGATTGGCTATCTTCTATTGCCTTTCTCCAGCCGCCAGTGCATAGCTACTTTGCTCAACTCGTCAGACTCTTCGCCTATCTCTTAAGAGATCACAGAAGTTTCATGATCAAAGCCATTCGCTTCCCTCAATTCTTTCTTTTGAGCCTAATAAAGATGAACAGATTCAACGTTCTAATGGATAGGACCGAGGCTCATCAAAAACAAGGTTGA

Protein sequence

MGIAQVASQYMFRNVFCLRSRLVIPAIFDWLSSIAFLQPPVHSYFAQLVRLFAYLLRDHRSFMIKAIRFPQFFLLSLIKMNRFNVLMDRTEAHQKQG*
Homology
[Close]
BLAST of Csa2G150520.1 vs. TrEMBL
Match: A0A0A0LI14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G150520 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.1e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MGIAQVASQYMFRNVFCLRSRLVIPAIFDWLSSIAFLQPPVHSYFAQLVRLFAYLLRDHR 60
          MGIAQVASQYMFRNVFCLRSRLVIPAIFDWLSSIAFLQPPVHSYFAQLVRLFAYLLRDHR
Sbjct: 1  MGIAQVASQYMFRNVFCLRSRLVIPAIFDWLSSIAFLQPPVHSYFAQLVRLFAYLLRDHR 60

Query: 61 SFMIKAIRFPQFFLLSLIKMNRFNVLMDRTEAHQKQG 98
          SFMIKAIRFPQFFLLSLIKMNRFNVLMDRTEAHQKQG
Sbjct: 61 SFMIKAIRFPQFFLLSLIKMNRFNVLMDRTEAHQKQG 97

[Close]
BLAST of Csa2G150520.1 vs. NCBI nr
Match: gi|700206391|gb|KGN61510.1| (hypothetical protein Csa_2G150520 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 3.0e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MGIAQVASQYMFRNVFCLRSRLVIPAIFDWLSSIAFLQPPVHSYFAQLVRLFAYLLRDHR 60
          MGIAQVASQYMFRNVFCLRSRLVIPAIFDWLSSIAFLQPPVHSYFAQLVRLFAYLLRDHR
Sbjct: 1  MGIAQVASQYMFRNVFCLRSRLVIPAIFDWLSSIAFLQPPVHSYFAQLVRLFAYLLRDHR 60

Query: 61 SFMIKAIRFPQFFLLSLIKMNRFNVLMDRTEAHQKQG 98
          SFMIKAIRFPQFFLLSLIKMNRFNVLMDRTEAHQKQG
Sbjct: 61 SFMIKAIRFPQFFLLSLIKMNRFNVLMDRTEAHQKQG 97

The following BLAST results are available for this feature:
BLAST of Csa2G150520.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI14_CUCSA2.1e-47100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G150520 PE=4 SV=1[more]
BLAST of Csa2G150520.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206391|gb|KGN61510.1|3.0e-47100.00hypothetical protein Csa_2G150520 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa2G150520Csa2G150520gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa2G150520.1Csa2G150520.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G150520.1.cds1Csa2G150520.1.cds1CDS
Csa2G150520.1.cds2Csa2G150520.1.cds2CDS
Csa2G150520.1.cds3Csa2G150520.1.cds3CDS