Csa1G015800.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G015800.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Nuclear transcription factor Y subunit B-1; contains IPR009072 (Histone-fold), IPR027113 (Transcriptional regulator Dr1/Ncb2)
Location	Chr1 : 2159806 .. 2163445 (+)
Sequence length	471

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAACCTCTGATAAAAATGCATATATCAACAATGCCCTTCCTCCACCACACCACCACCTCCTTCGCCTCCTACGATTCCGATCGTCTTCAATCCCTGGGATCGCCGTCGTCATTTTCCGGTTTTCTCTATTCCGTTTTTCTATTCTCTTCTGGGTCCTCGTAAGTTCCGATCTCCTTCTCTTTTCCTTGCTTCGTTTGTGTTTTATTTTTCCTGAATTTGTTTATGTTTTTATTTCCGCCCTTGGGGTTCTTTTTTCTCTGATTTTTTTTTTCTGGGTTGTATGTATTTCAGTTTTGAAGGTTCGGTATGGAGCCGATGGACATAGTAGGAAAGTCTAAAGAGGACGCCTCGCTTCCAAAGGGTACTTGTAATTTCTGCGGTGTTTTTGTTGTCTGATTTTTTAGGGTTTTTTTCCCTCATGGTGTAGTGAATTTGATGTGAGGATTCATGGACTAATACGGGCTTTCTCTTACTTTACAACGATTATTTTAATTTTGGGTTATTTTTTATAAATTCTGAAGAGGAAGTATGGAATTGTGTGTTGAAGTTTATGTCTGGAAAATCTATATTTTGTGAGTTGAGCGATTAGTGGTACCGTTAATTTTCGTTTCGACTGGAGAAGACAACCCTGGGTGCTTATTTTCTCGTTTATTGGATTTTGTTTACTCGGTACGGCTGCATGAGGCGGCAATTTTTGGTGGGAACTTGAAAGTCCATAATTTCAGGAGGAGTTCATGGAAGGGAACTCGTTTCCTGTTTTTCTTTTCTGTCTTTTTCTGTGGGGACAAGCGAGTGACTTGTTTGCTGTACGCCATAACTAAATATTGATGCTCTAGTGTTCATCAGTTCTTACTCTAATGTGTTCACGTTCTGTAAACGTGGATAGATATATTCTTTGGCTTCATTCATGTTTTTGCTTTCATCCCACATCTGCTACACGAATTACCAGTCACCCAGTTTACAAAACTTATTATAAGTATACTATGTAAGATGACAGGGTTTTCGAAAACAGTTGGATTTTCTTTTGTACTGGAGTTTCATCTTACTTCGAAATTCTTCCCTTCTTTTTGTTCTTTGCTGCCTTTGAATCGGGTTTGTTTTGTTGTTCTTGTTCAGCTTTCAAGCTAGATGCCTTTCTTTGGAAGAGTAGTTTTGTGGACATTTATGTTCCCAATTGTTTGGAGTTTCTCTACTCCTGTGTCCTTTTTCTTTCAGTTTCATTAGCTTACATGAATTGGTTCAAACTTTGATATGATGTAATATGGTGACAATAATATGGCACCCTTCCTTTCTTTCATTTTTTTATCGGTGAAAGTTGTTTACATTAAAAAAAAAAAAGACAACCTTCCTTGAACAAACAAGGTAATTGAAGACCATTTAATTGCCTAAGTAACTGCTGAAGTTTGCTTTGGTTTGTTCCTTTGTATGTGGGCGGATTTAAATCTCTTATATTTGTTAGAGGTTAAAACATTGACTGTCAACCCGTTGAGCCATGCATAGGGTAGCATGATGTTTCCCTGGTAGTTTTTTTTAATCATTAAATTTTTTGTTTTTTTTTCCAAATTTTCTTTTTCAGCGACTATGACCAAGATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCTCAAGATCTTCTGATTGAGTGTTGTGTAGGTGAGAATATCTTGCCATTTTCTTTGTACATTTTAACATTTTACGTGTTAGCACTTGATGTTGGTTTTCTGTGCTACTGTTAATGACCGTAATGGTTCTATTATTTTTCCAACAATAAGGGGCAGTAGTTGTCTTCAGACACTGTTGTTCTATTTTATTGTGTAGTTGATTTTTTGTACCTTTTTTTTACTATTGTCCTCCCCACATGAGCTATTTAAGGTGGTGGCAGGTTTTCATGACTGATCAATTATCACTTCTTACTCAAGAATTGCACTCTCTTTATTTTGCTGTTCTTGCAGAGTTTATAAACCTTGTATCGTCAGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTCTATGAACTATCCAAGTTTCATTTACATTCTTAATAATATAAACGTTTATGTGTTACTTGTTATTATGCTTTAGGATAATACATGCTAGTATTTTCTTGTTTACCATCCAGCTCCATGGATTCAAAATTCCCATTTTGTAGAAGTTTTATTCAGTATTGCTTGATAAGGCTGTACAGCTAAAGTACCTGATCCTTGTATGTTAAGTAAATGAATGTTATTCAGTGTAATAAAAATTTGAAGGTCTCAACTAGGACTTACCAATGTACTCCTTGTATGTTTGATCGATGGTTGGCAACCATTCTGATCATGGAATCATTTTAGTGCTCTGCTTTACTTTTTATTTTATGAGAAACCAGGCTTTCATTATGACTACAAGTAATAATAGAATTTTTTTTTTTTTTTTTACTTTAAGAACCGATCATATTGTTCTATCTTAATCTATTAATATTTTCAGCACAAAATTTATTTTAAATCTACTGTCTTTTATATATTTGAACTCAGCTTGGGTCAAGGATTAATCTACTCCGCAGAAATCTTAGTTTTCTCCTAATTCACAGTAATGGAGGAGAAACAAATCTCAATATATGTTAGCAATGTCATGTGCAGTTTAATGCCTCCATGTTCCAATTCAAACATATATCTTTCCAGCTTAGTCTTTATATTTTGTTCTTTGCTTTAGCATTTTTTATGTGTTTTACATTTTTATTATTTGTCTCCTTTTAATTTGAGCTCTAGTTTCTTCTCCTTTCTTCAATGAAAAGTTTCATCTCTTTTAAAAAAAAGAAAGGAAAAAAAAGAAGAAAAACCTATGTTCTTGTGCTTGAAGAGAGAGTGATTTGCAGCTTTTGCTTGGCTACTTTACATTATCTATGCTTTTGGGCTTACACTTATGTTTATATATATGATCAGGTGCTTGGTTTTAGTGAATACATTGCGGAAGTTTATGCTGCATATGAACAACACAGGATCGAAACTATGGTAATACTTCAGTATATTTACTATGGTACCTGTCCAATGAATTAATTGAAGTGATTGATCATATAGAAATTTGCTGCAGTCTAGATAATCAGTATGTATTTTATTTCATTCCATAAAGGATTATTTTCCATCATTCTCATAATTAGAATTAGGTCATAAAATTTAGTTCTGGTTTTGGCTCATGTGTGTTTCAAGACATCTAGAAGCACTAACATTTTTATTTTCTCTCTTTCGAGAAACTTCTGCAGCAAGACTCATTGAAAGGAGGAAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTAGCTGAGCAACAAAGAATGTTTGCCGAGGCACGTGCAAGAATGAACGGCAGTAATACTGCACCAAAGCAATCGGAGCCTGAGCAAAGTTTAGAGAGCTAATTTTAGGATCTTTATTTTCTTCAACAATAGGCAAGATTCCTTGACCCCTTCCATTTGTGCCTCAAATATGCCTTGTGCATATGTACAAAAAAGAAATGATTAACCTAGCTACTGGGCTCTGTGAAGATGCATTGTAATATATATCCATATTTGCGGATCCATGTTTAGTTATTAATACAAGTAGTGA

mRNA sequence

ATGGAGCCGATGGACATAGTAGGAAAGTCTAAAGAGGACGCCTCGCTTCCAAAGGCGACTATGACCAAGATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCTCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTATCGTCAGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGCGGAAGTTTATGCTGCATATGAACAACACAGGATCGAAACTATGCAAGACTCATTGAAAGGAGGAAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTAGCTGAGCAACAAAGAATGTTTGCCGAGGCACGTGCAAGAATGAACGGCAGTAATACTGCACCAAAGCAATCGGAGCCTGAGCAAAGTTTAGAGAGCTAA

Coding sequence (CDS)

ATGGAGCCGATGGACATAGTAGGAAAGTCTAAAGAGGACGCCTCGCTTCCAAAGGCGACTATGACCAAGATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCTCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTATCGTCAGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGCGGAAGTTTATGCTGCATATGAACAACACAGGATCGAAACTATGCAAGACTCATTGAAAGGAGGAAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTAGCTGAGCAACAAAGAATGTTTGCCGAGGCACGTGCAAGAATGAACGGCAGTAATACTGCACCAAAGCAATCGGAGCCTGAGCAAAGTTTAGAGAGCTAA

Protein sequence

MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES*

Homology

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BLAST of Csa1G015800.1 vs. Swiss-Prot
Match: NC2B_ARATH (Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 9.2e-67
Identity = 126/156 (80.77%), Postives = 136/156 (87.18%), Query Frame = 1


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           M+PMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESN+
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESND 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VC+KE+KRTIAPEHVLKAL+VLGF EYI EVYAAYEQH+ ETMQD+ +  KW+ GA+MTE
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPGAQMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEA AEQQRMFAEARARMNG  + P+   PE    S
Sbjct: 121 EEAAAEQQRMFAEARARMNGGVSVPQPEHPETDQRS 156

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BLAST of Csa1G015800.1 vs. Swiss-Prot
Match: NC2B_DICDI (Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 9.6e-32
Identity = 66/142 (46.48%), Postives = 101/142 (71.13%), Query Frame = 1


Query: 11  KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTI 70
           +++ SLPKAT++K+IKEMLP DV+ + + +DL++ECCVEFI+L+SSE+N++C +E+KRTI
Sbjct: 8   EDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTI 67

Query: 71  APEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTEEEALAEQQRM 130
           A EHV+KAL  LGFS+Y  +V   Y++H++E    S    K+ N  + T E+ + EQQ +
Sbjct: 68  AAEHVIKALTELGFSDYTQKVSDVYDKHKLEVSTKSKSSKKFENLGKPT-EQLIREQQLL 127

Query: 131 FAEARARMNGSNTAPKQSEPEQ 153
           FA+AR+    S  A +  + +Q
Sbjct: 128 FAKARSAFQASPEAQQLQQLQQ 148

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BLAST of Csa1G015800.1 vs. Swiss-Prot
Match: NC2B_SCHPO (Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.9e-28
Identity = 61/137 (44.53%), Postives = 89/137 (64.96%), Query Frame = 1


Query: 8   GKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEK 67
           G + ++ SLPKAT+ K++ ++LP D+   ++A+DLLIECCVEFI+LVSSE+NE+C KE K
Sbjct: 4   GFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAK 63

Query: 68  RTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTEEEALAEQ 127
           +TIA EH++KALE L F EYIAE      +H+ +      K  K+     ++ +E L +Q
Sbjct: 64  KTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSG-VSRDELLRQQ 123

Query: 128 QRMFAEARARMNGSNTA 145
           + + + AR R    N A
Sbjct: 124 EELLSRARERFKNQNIA 139

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BLAST of Csa1G015800.1 vs. Swiss-Prot
Match: NC2B_CHICK (Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.6e-26
Identity = 58/124 (46.77%), Postives = 87/124 (70.16%), Query Frame = 1


Query: 12  EDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIA 71
           +D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C+K EK+TI+
Sbjct: 9   DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS 68

Query: 72  PEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTEEEALAEQQRMF 131
           PEHV++ALE LGF  YI+EV    ++ +   ++      +  N   + EEE L +QQ +F
Sbjct: 69  PEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLEN-LGIPEEELLRQQQELF 128

Query: 132 AEAR 136
           A+AR
Sbjct: 129 AKAR 130

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BLAST of Csa1G015800.1 vs. Swiss-Prot
Match: NC2B_HUMAN (Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.6e-26
Identity = 58/124 (46.77%), Postives = 87/124 (70.16%), Query Frame = 1


Query: 12  EDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIA 71
           +D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C+K EK+TI+
Sbjct: 9   DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS 68

Query: 72  PEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTEEEALAEQQRMF 131
           PEHV++ALE LGF  YI+EV    ++ +   ++      +  N   + EEE L +QQ +F
Sbjct: 69  PEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLEN-LGIPEEELLRQQQELF 128

Query: 132 AEAR 136
           A+AR
Sbjct: 129 AKAR 130

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BLAST of Csa1G015800.1 vs. TrEMBL
Match: A0A0A0LPP9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015800 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 7.8e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES
Sbjct: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 156

[Close]

BLAST of Csa1G015800.1 vs. TrEMBL
Match: A0A061FYD7_THECC (Nuclear factor Y, subunit B13 isoform 2 OS=Theobroma cacao GN=TCM_014477 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.2e-73
Identity = 140/156 (89.74%), Postives = 149/156 (95.51%), Query Frame = 1


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINL+SSESN+
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESND 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VC++E+KRTIAPEHVLKALEVLGF EYI EVYAAYEQH+IETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCNREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKIETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEA+AEQQRMFAEARARMNG   APKQ +P+ SLES
Sbjct: 121 EEAVAEQQRMFAEARARMNGGAVAPKQPDPDPSLES 156

[Close]

BLAST of Csa1G015800.1 vs. TrEMBL
Match: A0A067J8H8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05835 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.5e-73
Identity = 144/157 (91.72%), Postives = 149/157 (94.90%), Query Frame = 1


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VCSKEEKRTIAPEHVLKALEVLGF EYI EVYAAYEQH++ETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQS-EPEQSLES 157
           EEA+AEQQRMFAEARARMNG   APKQ  E ++SLES
Sbjct: 121 EEAVAEQQRMFAEARARMNGGAIAPKQQPETDRSLES 157

[Close]

BLAST of Csa1G015800.1 vs. TrEMBL
Match: A0A0D2LS17_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G064700 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.5e-73
Identity = 139/156 (89.10%), Postives = 149/156 (95.51%), Query Frame = 1


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINL+SSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VC++E+KRTIAPEHVLKALEVLGF +YI EVYAAYEQH+IET+QDSLKGGKWSNGAEMTE
Sbjct: 61  VCNREDKRTIAPEHVLKALEVLGFGKYIEEVYAAYEQHKIETLQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEA+AEQQRMFAEARARMNG   APKQ +P+ SLES
Sbjct: 121 EEAVAEQQRMFAEARARMNGGAVAPKQPDPDPSLES 156

[Close]

BLAST of Csa1G015800.1 vs. TrEMBL
Match: A0A0B0MXM4_GOSAR (Protein Dr1-like protein OS=Gossypium arboreum GN=F383_10506 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.5e-73
Identity = 139/156 (89.10%), Postives = 149/156 (95.51%), Query Frame = 1


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINL+SSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VC++E+KRTIAPEHVLKALEVLGF +YI EVYAAYEQH+IET+QDSLKGGKWSNGAEMTE
Sbjct: 61  VCNREDKRTIAPEHVLKALEVLGFGKYIEEVYAAYEQHKIETLQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEA+AEQQRMFAEARARMNG   APKQ +P+ SLES
Sbjct: 121 EEAVAEQQRMFAEARARMNGGAVAPKQPDPDPSLES 156

[Close]

BLAST of Csa1G015800.1 vs. TAIR10
Match: AT5G23090.2 (AT5G23090.2 nuclear factor Y, subunit B13)

HSP 1 Score: 254.2 bits (648), Expect = 5.2e-68
Identity = 126/156 (80.77%), Postives = 136/156 (87.18%), Query Frame = 1


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           M+PMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESN+
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESND 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VC+KE+KRTIAPEHVLKAL+VLGF EYI EVYAAYEQH+ ETMQD+ +  KW+ GA+MTE
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPGAQMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEA AEQQRMFAEARARMNG  + P+   PE    S
Sbjct: 121 EEAAAEQQRMFAEARARMNGGVSVPQPEHPETDQRS 156

[Close]

BLAST of Csa1G015800.1 vs. TAIR10
Match: AT5G08190.1 (AT5G08190.1 nuclear factor Y, subunit B12)

HSP 1 Score: 249.2 bits (635), Expect = 1.7e-66
Identity = 124/152 (81.58%), Postives = 135/152 (88.82%), Query Frame = 1


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           M+PMDIVGKSKEDASLPKATMTKIIKEMLP DVRVARDAQDLLIECCVEFINL+SSESNE
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VC+KE+KRTIAPEHVLKAL+VLGF EY+ EVYAAYEQH+ ETMQDS +  K ++GAEMTE
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHKYETMQDSQRSVKMNSGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQ 153
           EEA AEQQRMFAEARARMNG  T P+  + E+
Sbjct: 121 EEAAAEQQRMFAEARARMNGGVTVPQPEQLEE 152

[Close]

BLAST of Csa1G015800.1 vs. TAIR10
Match: AT2G38880.8 (AT2G38880.8 nuclear factor Y, subunit B1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-13
Identity = 33/94 (35.11%), Postives = 62/94 (65.96%), Query Frame = 1


Query: 11  KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTI 70
           ++D  LP A +++I+K+ LPP+ ++ +DA+D + EC  EFI+ ++SE+++ C KE+++T+
Sbjct: 21  EQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTV 80

Query: 71  APEHVLKALEVLGFSEYI--AEVYAAYEQHRIET 103
             + +L A+  LGF +Y+   ++Y A  +   ET
Sbjct: 81  NGDDLLWAMATLGFEDYLEPLKIYLARYREVFET 114

[Close]

BLAST of Csa1G015800.1 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 71.2 bits (173), Expect = 6.2e-13
Identity = 36/112 (32.14%), Postives = 66/112 (58.93%), Query Frame = 1


Query: 11  KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTI 70
           ++D  LP A +++I+K+ LP + ++++DA++ + EC  EFI+ V+ E+++ C KE+++TI
Sbjct: 27  EQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTI 86

Query: 71  APEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTEEE 123
             + +L A+  LGF +Y+ E    Y Q   E   +    G+   G E+ E +
Sbjct: 87  NGDDLLWAMTTLGFEDYV-EPLKVYLQRFREIEGERTGLGRPQTGGEVGEHQ 137

[Close]

BLAST of Csa1G015800.1 vs. TAIR10
Match: AT2G37060.1 (AT2G37060.1 nuclear factor Y, subunit B8)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-12
Identity = 35/102 (34.31%), Postives = 64/102 (62.75%), Query Frame = 1


Query: 11  KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTI 70
           ++D  LP A +++I+K  LP + ++A+DA++++ EC  EFI+ V+SE+++ C +E+++TI
Sbjct: 30  EQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTI 89

Query: 71  APEHVLKALEVLGFSEYI--AEVYAAYEQHRIETMQDSLKGG 111
             + +L A+  LGF +Y+   +VY    +      + S KGG
Sbjct: 90  NGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGG 131

[Close]

BLAST of Csa1G015800.1 vs. NCBI nr
Match: gi|449440901|ref|XP_004138222.1| (PREDICTED: protein Dr1 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 307.8 bits (787), Expect = 1.1e-80
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES
Sbjct: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 156

[Close]

BLAST of Csa1G015800.1 vs. NCBI nr
Match: gi|659106495|ref|XP_008453352.1| (PREDICTED: protein Dr1 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 303.9 bits (777), Expect = 1.6e-79
Identity = 154/156 (98.72%), Postives = 154/156 (98.72%), Query Frame = 1


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VCSKEEKRTIAPEHVLKALEVLGFSEYI EVYAAYEQHRIETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEALAEQQRMFAEARARMNGSNTAPKQ EPEQSLES
Sbjct: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 156

[Close]

BLAST of Csa1G015800.1 vs. NCBI nr
Match: gi|778656255|ref|XP_011648700.1| (PREDICTED: protein Dr1 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 302.0 bits (772), Expect = 6.1e-79
Identity = 156/160 (97.50%), Postives = 156/160 (97.50%), Query Frame = 1


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETM----QDSLKGGKWSNGA 120
           VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETM    QDSLKGGKWSNGA
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMKLLQQDSLKGGKWSNGA 120

Query: 121 EMTEEEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EMTEEEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES
Sbjct: 121 EMTEEEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 160

[Close]

BLAST of Csa1G015800.1 vs. NCBI nr
Match: gi|659106493|ref|XP_008453351.1| (PREDICTED: protein Dr1 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 298.1 bits (762), Expect = 8.9e-78
Identity = 154/160 (96.25%), Postives = 154/160 (96.25%), Query Frame = 1


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETM----QDSLKGGKWSNGA 120
           VCSKEEKRTIAPEHVLKALEVLGFSEYI EVYAAYEQHRIETM    QDSLKGGKWSNGA
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRIETMKLLQQDSLKGGKWSNGA 120

Query: 121 EMTEEEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EMTEEEALAEQQRMFAEARARMNGSNTAPKQ EPEQSLES
Sbjct: 121 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 160

[Close]

BLAST of Csa1G015800.1 vs. NCBI nr
Match: gi|590669369|ref|XP_007037755.1| (Nuclear factor Y, subunit B13 isoform 2 [Theobroma cacao])

HSP 1 Score: 283.9 bits (725), Expect = 1.7e-73
Identity = 140/156 (89.74%), Postives = 149/156 (95.51%), Query Frame = 1


Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINL+SSESN+
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESND 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VC++E+KRTIAPEHVLKALEVLGF EYI EVYAAYEQH+IETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCNREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKIETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEA+AEQQRMFAEARARMNG   APKQ +P+ SLES
Sbjct: 121 EEAVAEQQRMFAEARARMNGGAVAPKQPDPDPSLES 156

The following BLAST results are available for this feature:

BLAST of Csa1G015800.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NC2B_ARATH	9.2e-67	80.77	Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1	[more]
NC2B_DICDI	9.6e-32	46.48	Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1	[more]
NC2B_SCHPO	4.9e-28	44.53	Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces pombe (strain 97...	[more]
NC2B_CHICK	4.6e-26	46.77	Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1	[more]
NC2B_HUMAN	4.6e-26	46.77	Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1	[more]

BLAST of Csa1G015800.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPP9_CUCSA	7.8e-81	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015800 PE=4 SV=1	[more]
A0A061FYD7_THECC	1.2e-73	89.74	Nuclear factor Y, subunit B13 isoform 2 OS=Theobroma cacao GN=TCM_014477 PE=4 SV...	[more]
A0A067J8H8_JATCU	3.5e-73	91.72	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05835 PE=4 SV=1	[more]
A0A0D2LS17_GOSRA	3.5e-73	89.10	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G064700 PE=4 SV=1	[more]
A0A0B0MXM4_GOSAR	3.5e-73	89.10	Protein Dr1-like protein OS=Gossypium arboreum GN=F383_10506 PE=4 SV=1	[more]

BLAST of Csa1G015800.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G23090.2	5.2e-68	80.77	nuclear factor Y, subunit B13	[more]
AT5G08190.1	1.7e-66	81.58	nuclear factor Y, subunit B12	[more]
AT2G38880.8	1.6e-13	35.11	nuclear factor Y, subunit B1	[more]
AT5G47640.1	6.2e-13	32.14	nuclear factor Y, subunit B2	[more]
AT2G37060.1	1.8e-12	34.31	nuclear factor Y, subunit B8	[more]

BLAST of Csa1G015800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440901\|ref\|XP_004138222.1\|	1.1e-80	100.00	PREDICTED: protein Dr1 homolog isoform X2 [Cucumis sativus]	[more]
gi\|659106495\|ref\|XP_008453352.1\|	1.6e-79	98.72	PREDICTED: protein Dr1 homolog isoform X2 [Cucumis melo]	[more]
gi\|778656255\|ref\|XP_011648700.1\|	6.1e-79	97.50	PREDICTED: protein Dr1 homolog isoform X1 [Cucumis sativus]	[more]
gi\|659106493\|ref\|XP_008453351.1\|	8.9e-78	96.25	PREDICTED: protein Dr1 homolog isoform X1 [Cucumis melo]	[more]
gi\|590669369\|ref\|XP_007037755.1\|	1.7e-73	89.74	Nuclear factor Y, subunit B13 isoform 2 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G015800	Csa1G015800	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa1G015800.1	Csa1G015800.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G015800.1.utr5p1	Csa1G015800.1.utr5p1	five_prime_UTR
Csa1G015800.1.utr5p2	Csa1G015800.1.utr5p2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G015800.1.cds2	Csa1G015800.1.cds2	CDS
Csa1G015800.1.cds3	Csa1G015800.1.cds3	CDS
Csa1G015800.1.cds4	Csa1G015800.1.cds4	CDS
Csa1G015800.1.cds5	Csa1G015800.1.cds5	CDS
Csa1G015800.1.cds6	Csa1G015800.1.cds6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G015800.1.utr3p1	Csa1G015800.1.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 14..79 score: 7.5
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 8..141 score: 5.7
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 12..142 score: 5.03
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 1..156 score: 5.8E
None	No IPR available	PANTHER	PTHR11064:SF35	PROTEIN DR1 HOMOLOG	coord: 1..156 score: 5.8E