Csa1G015800 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G015800
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionNuclear transcription factor Y subunit B-1; contains IPR009072 (Histone-fold), IPR027113 (Transcriptional regulator Dr1/Ncb2)
LocationChr1 : 2159806 .. 2163445 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAACCTCTGATAAAAATGCATATATCAACAATGCCCTTCCTCCACCACACCACCACCTCCTTCGCCTCCTACGATTCCGATCGTCTTCAATCCCTGGGATCGCCGTCGTCATTTTCCGGTTTTCTCTATTCCGTTTTTCTATTCTCTTCTGGGTCCTCGTAAGTTCCGATCTCCTTCTCTTTTCCTTGCTTCGTTTGTGTTTTATTTTTCCTGAATTTGTTTATGTTTTTATTTCCGCCCTTGGGGTTCTTTTTTCTCTGATTTTTTTTTTCTGGGTTGTATGTATTTCAGTTTTGAAGGTTCGGTATGGAGCCGATGGACATAGTAGGAAAGTCTAAAGAGGACGCCTCGCTTCCAAAGGGTACTTGTAATTTCTGCGGTGTTTTTGTTGTCTGATTTTTTAGGGTTTTTTTCCCTCATGGTGTAGTGAATTTGATGTGAGGATTCATGGACTAATACGGGCTTTCTCTTACTTTACAACGATTATTTTAATTTTGGGTTATTTTTTATAAATTCTGAAGAGGAAGTATGGAATTGTGTGTTGAAGTTTATGTCTGGAAAATCTATATTTTGTGAGTTGAGCGATTAGTGGTACCGTTAATTTTCGTTTCGACTGGAGAAGACAACCCTGGGTGCTTATTTTCTCGTTTATTGGATTTTGTTTACTCGGTACGGCTGCATGAGGCGGCAATTTTTGGTGGGAACTTGAAAGTCCATAATTTCAGGAGGAGTTCATGGAAGGGAACTCGTTTCCTGTTTTTCTTTTCTGTCTTTTTCTGTGGGGACAAGCGAGTGACTTGTTTGCTGTACGCCATAACTAAATATTGATGCTCTAGTGTTCATCAGTTCTTACTCTAATGTGTTCACGTTCTGTAAACGTGGATAGATATATTCTTTGGCTTCATTCATGTTTTTGCTTTCATCCCACATCTGCTACACGAATTACCAGTCACCCAGTTTACAAAACTTATTATAAGTATACTATGTAAGATGACAGGGTTTTCGAAAACAGTTGGATTTTCTTTTGTACTGGAGTTTCATCTTACTTCGAAATTCTTCCCTTCTTTTTGTTCTTTGCTGCCTTTGAATCGGGTTTGTTTTGTTGTTCTTGTTCAGCTTTCAAGCTAGATGCCTTTCTTTGGAAGAGTAGTTTTGTGGACATTTATGTTCCCAATTGTTTGGAGTTTCTCTACTCCTGTGTCCTTTTTCTTTCAGTTTCATTAGCTTACATGAATTGGTTCAAACTTTGATATGATGTAATATGGTGACAATAATATGGCACCCTTCCTTTCTTTCATTTTTTTATCGGTGAAAGTTGTTTACATTAAAAAAAAAAAAGACAACCTTCCTTGAACAAACAAGGTAATTGAAGACCATTTAATTGCCTAAGTAACTGCTGAAGTTTGCTTTGGTTTGTTCCTTTGTATGTGGGCGGATTTAAATCTCTTATATTTGTTAGAGGTTAAAACATTGACTGTCAACCCGTTGAGCCATGCATAGGGTAGCATGATGTTTCCCTGGTAGTTTTTTTTAATCATTAAATTTTTTGTTTTTTTTTCCAAATTTTCTTTTTCAGCGACTATGACCAAGATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCTCAAGATCTTCTGATTGAGTGTTGTGTAGGTGAGAATATCTTGCCATTTTCTTTGTACATTTTAACATTTTACGTGTTAGCACTTGATGTTGGTTTTCTGTGCTACTGTTAATGACCGTAATGGTTCTATTATTTTTCCAACAATAAGGGGCAGTAGTTGTCTTCAGACACTGTTGTTCTATTTTATTGTGTAGTTGATTTTTTGTACCTTTTTTTTACTATTGTCCTCCCCACATGAGCTATTTAAGGTGGTGGCAGGTTTTCATGACTGATCAATTATCACTTCTTACTCAAGAATTGCACTCTCTTTATTTTGCTGTTCTTGCAGAGTTTATAAACCTTGTATCGTCAGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTCTATGAACTATCCAAGTTTCATTTACATTCTTAATAATATAAACGTTTATGTGTTACTTGTTATTATGCTTTAGGATAATACATGCTAGTATTTTCTTGTTTACCATCCAGCTCCATGGATTCAAAATTCCCATTTTGTAGAAGTTTTATTCAGTATTGCTTGATAAGGCTGTACAGCTAAAGTACCTGATCCTTGTATGTTAAGTAAATGAATGTTATTCAGTGTAATAAAAATTTGAAGGTCTCAACTAGGACTTACCAATGTACTCCTTGTATGTTTGATCGATGGTTGGCAACCATTCTGATCATGGAATCATTTTAGTGCTCTGCTTTACTTTTTATTTTATGAGAAACCAGGCTTTCATTATGACTACAAGTAATAATAGAATTTTTTTTTTTTTTTTTACTTTAAGAACCGATCATATTGTTCTATCTTAATCTATTAATATTTTCAGCACAAAATTTATTTTAAATCTACTGTCTTTTATATATTTGAACTCAGCTTGGGTCAAGGATTAATCTACTCCGCAGAAATCTTAGTTTTCTCCTAATTCACAGTAATGGAGGAGAAACAAATCTCAATATATGTTAGCAATGTCATGTGCAGTTTAATGCCTCCATGTTCCAATTCAAACATATATCTTTCCAGCTTAGTCTTTATATTTTGTTCTTTGCTTTAGCATTTTTTATGTGTTTTACATTTTTATTATTTGTCTCCTTTTAATTTGAGCTCTAGTTTCTTCTCCTTTCTTCAATGAAAAGTTTCATCTCTTTTAAAAAAAAGAAAGGAAAAAAAAGAAGAAAAACCTATGTTCTTGTGCTTGAAGAGAGAGTGATTTGCAGCTTTTGCTTGGCTACTTTACATTATCTATGCTTTTGGGCTTACACTTATGTTTATATATATGATCAGGTGCTTGGTTTTAGTGAATACATTGCGGAAGTTTATGCTGCATATGAACAACACAGGATCGAAACTATGGTAATACTTCAGTATATTTACTATGGTACCTGTCCAATGAATTAATTGAAGTGATTGATCATATAGAAATTTGCTGCAGTCTAGATAATCAGTATGTATTTTATTTCATTCCATAAAGGATTATTTTCCATCATTCTCATAATTAGAATTAGGTCATAAAATTTAGTTCTGGTTTTGGCTCATGTGTGTTTCAAGACATCTAGAAGCACTAACATTTTTATTTTCTCTCTTTCGAGAAACTTCTGCAGCAAGACTCATTGAAAGGAGGAAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTAGCTGAGCAACAAAGAATGTTTGCCGAGGCACGTGCAAGAATGAACGGCAGTAATACTGCACCAAAGCAATCGGAGCCTGAGCAAAGTTTAGAGAGCTAATTTTAGGATCTTTATTTTCTTCAACAATAGGCAAGATTCCTTGACCCCTTCCATTTGTGCCTCAAATATGCCTTGTGCATATGTACAAAAAAGAAATGATTAACCTAGCTACTGGGCTCTGTGAAGATGCATTGTAATATATATCCATATTTGCGGATCCATGTTTAGTTATTAATACAAGTAGTGA

mRNA sequence

ATGGAGCCGATGGACATAGTAGGAAAGTCTAAAGAGGACGCCTCGCTTCCAAAGGCGACTATGACCAAGATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCTCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTATCGTCAGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGCGGAAGTTTATGCTGCATATGAACAACACAGGATCGAAACTATGCAAGACTCATTGAAAGGAGGAAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTAGCTGAGCAACAAAGAATGTTTGCCGAGGCACGTGCAAGAATGAACGGCAGTAATACTGCACCAAAGCAATCGGAGCCTGAGCAAAGTTTAGAGAGCTAA

Coding sequence (CDS)

ATGGAGCCGATGGACATAGTAGGAAAGTCTAAAGAGGACGCCTCGCTTCCAAAGGCGACTATGACCAAGATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCTCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTATCGTCAGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGCGGAAGTTTATGCTGCATATGAACAACACAGGATCGAAACTATGCAAGACTCATTGAAAGGAGGAAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTAGCTGAGCAACAAAGAATGTTTGCCGAGGCACGTGCAAGAATGAACGGCAGTAATACTGCACCAAAGCAATCGGAGCCTGAGCAAAGTTTAGAGAGCTAA

Protein sequence

MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES*
Homology
[Close]
BLAST of Csa1G015800 vs. Swiss-Prot
Match: NC2B_ARATH (Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 9.2e-67
Identity = 126/156 (80.77%), Postives = 136/156 (87.18%), Query Frame = 1 

Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           M+PMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESN+
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESND 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VC+KE+KRTIAPEHVLKAL+VLGF EYI EVYAAYEQH+ ETMQD+ +  KW+ GA+MTE
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPGAQMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEA AEQQRMFAEARARMNG  + P+   PE    S
Sbjct: 121 EEAAAEQQRMFAEARARMNGGVSVPQPEHPETDQRS 156

[Close]
BLAST of Csa1G015800 vs. Swiss-Prot
Match: NC2B_DICDI (Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 9.6e-32
Identity = 66/142 (46.48%), Postives = 101/142 (71.13%), Query Frame = 1 

Query: 11  KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTI 70
           +++ SLPKAT++K+IKEMLP DV+ + + +DL++ECCVEFI+L+SSE+N++C +E+KRTI
Sbjct: 8   EDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTI 67

Query: 71  APEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTEEEALAEQQRM 130
           A EHV+KAL  LGFS+Y  +V   Y++H++E    S    K+ N  + T E+ + EQQ +
Sbjct: 68  AAEHVIKALTELGFSDYTQKVSDVYDKHKLEVSTKSKSSKKFENLGKPT-EQLIREQQLL 127

Query: 131 FAEARARMNGSNTAPKQSEPEQ 153
           FA+AR+    S  A +  + +Q
Sbjct: 128 FAKARSAFQASPEAQQLQQLQQ 148

[Close]
BLAST of Csa1G015800 vs. Swiss-Prot
Match: NC2B_SCHPO (Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.9e-28
Identity = 61/137 (44.53%), Postives = 89/137 (64.96%), Query Frame = 1 

Query: 8   GKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEK 67
           G + ++ SLPKAT+ K++ ++LP D+   ++A+DLLIECCVEFI+LVSSE+NE+C KE K
Sbjct: 4   GFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAK 63

Query: 68  RTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTEEEALAEQ 127
           +TIA EH++KALE L F EYIAE      +H+ +      K  K+     ++ +E L +Q
Sbjct: 64  KTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSG-VSRDELLRQQ 123

Query: 128 QRMFAEARARMNGSNTA 145
           + + + AR R    N A
Sbjct: 124 EELLSRARERFKNQNIA 139

[Close]
BLAST of Csa1G015800 vs. Swiss-Prot
Match: NC2B_CHICK (Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.6e-26
Identity = 58/124 (46.77%), Postives = 87/124 (70.16%), Query Frame = 1 

Query: 12  EDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIA 71
           +D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C+K EK+TI+
Sbjct: 9   DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS 68

Query: 72  PEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTEEEALAEQQRMF 131
           PEHV++ALE LGF  YI+EV    ++ +   ++      +  N   + EEE L +QQ +F
Sbjct: 69  PEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLEN-LGIPEEELLRQQQELF 128

Query: 132 AEAR 136
           A+AR
Sbjct: 129 AKAR 130

[Close]
BLAST of Csa1G015800 vs. Swiss-Prot
Match: NC2B_HUMAN (Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.6e-26
Identity = 58/124 (46.77%), Postives = 87/124 (70.16%), Query Frame = 1 

Query: 12  EDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIA 71
           +D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C+K EK+TI+
Sbjct: 9   DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS 68

Query: 72  PEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTEEEALAEQQRMF 131
           PEHV++ALE LGF  YI+EV    ++ +   ++      +  N   + EEE L +QQ +F
Sbjct: 69  PEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLEN-LGIPEEELLRQQQELF 128

Query: 132 AEAR 136
           A+AR
Sbjct: 129 AKAR 130

[Close]
BLAST of Csa1G015800 vs. TrEMBL
Match: A0A0A0LPP9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015800 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 7.8e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 

Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES
Sbjct: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 156

[Close]
BLAST of Csa1G015800 vs. TrEMBL
Match: A0A061FYD7_THECC (Nuclear factor Y, subunit B13 isoform 2 OS=Theobroma cacao GN=TCM_014477 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.2e-73
Identity = 140/156 (89.74%), Postives = 149/156 (95.51%), Query Frame = 1 

Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINL+SSESN+
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESND 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VC++E+KRTIAPEHVLKALEVLGF EYI EVYAAYEQH+IETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCNREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKIETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEA+AEQQRMFAEARARMNG   APKQ +P+ SLES
Sbjct: 121 EEAVAEQQRMFAEARARMNGGAVAPKQPDPDPSLES 156

[Close]
BLAST of Csa1G015800 vs. TrEMBL
Match: A0A067J8H8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05835 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.5e-73
Identity = 144/157 (91.72%), Postives = 149/157 (94.90%), Query Frame = 1 

Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VCSKEEKRTIAPEHVLKALEVLGF EYI EVYAAYEQH++ETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQS-EPEQSLES 157
           EEA+AEQQRMFAEARARMNG   APKQ  E ++SLES
Sbjct: 121 EEAVAEQQRMFAEARARMNGGAIAPKQQPETDRSLES 157

[Close]
BLAST of Csa1G015800 vs. TrEMBL
Match: A0A0D2LS17_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G064700 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.5e-73
Identity = 139/156 (89.10%), Postives = 149/156 (95.51%), Query Frame = 1 

Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINL+SSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VC++E+KRTIAPEHVLKALEVLGF +YI EVYAAYEQH+IET+QDSLKGGKWSNGAEMTE
Sbjct: 61  VCNREDKRTIAPEHVLKALEVLGFGKYIEEVYAAYEQHKIETLQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEA+AEQQRMFAEARARMNG   APKQ +P+ SLES
Sbjct: 121 EEAVAEQQRMFAEARARMNGGAVAPKQPDPDPSLES 156

[Close]
BLAST of Csa1G015800 vs. TrEMBL
Match: A0A0B0MXM4_GOSAR (Protein Dr1-like protein OS=Gossypium arboreum GN=F383_10506 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.5e-73
Identity = 139/156 (89.10%), Postives = 149/156 (95.51%), Query Frame = 1 

Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINL+SSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VC++E+KRTIAPEHVLKALEVLGF +YI EVYAAYEQH+IET+QDSLKGGKWSNGAEMTE
Sbjct: 61  VCNREDKRTIAPEHVLKALEVLGFGKYIEEVYAAYEQHKIETLQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEA+AEQQRMFAEARARMNG   APKQ +P+ SLES
Sbjct: 121 EEAVAEQQRMFAEARARMNGGAVAPKQPDPDPSLES 156

[Close]
BLAST of Csa1G015800 vs. TAIR10
Match: AT5G23090.2 (AT5G23090.2 nuclear factor Y, subunit B13)

HSP 1 Score: 254.2 bits (648), Expect = 5.2e-68
Identity = 126/156 (80.77%), Postives = 136/156 (87.18%), Query Frame = 1 

Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           M+PMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESN+
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESND 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VC+KE+KRTIAPEHVLKAL+VLGF EYI EVYAAYEQH+ ETMQD+ +  KW+ GA+MTE
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPGAQMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEA AEQQRMFAEARARMNG  + P+   PE    S
Sbjct: 121 EEAAAEQQRMFAEARARMNGGVSVPQPEHPETDQRS 156

[Close]
BLAST of Csa1G015800 vs. TAIR10
Match: AT5G08190.1 (AT5G08190.1 nuclear factor Y, subunit B12)

HSP 1 Score: 249.2 bits (635), Expect = 1.7e-66
Identity = 124/152 (81.58%), Postives = 135/152 (88.82%), Query Frame = 1 

Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           M+PMDIVGKSKEDASLPKATMTKIIKEMLP DVRVARDAQDLLIECCVEFINL+SSESNE
Sbjct: 1   MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VC+KE+KRTIAPEHVLKAL+VLGF EY+ EVYAAYEQH+ ETMQDS +  K ++GAEMTE
Sbjct: 61  VCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHKYETMQDSQRSVKMNSGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQ 153
           EEA AEQQRMFAEARARMNG  T P+  + E+
Sbjct: 121 EEAAAEQQRMFAEARARMNGGVTVPQPEQLEE 152

[Close]
BLAST of Csa1G015800 vs. TAIR10
Match: AT2G38880.8 (AT2G38880.8 nuclear factor Y, subunit B1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-13
Identity = 33/94 (35.11%), Postives = 62/94 (65.96%), Query Frame = 1 

Query: 11  KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTI 70
           ++D  LP A +++I+K+ LPP+ ++ +DA+D + EC  EFI+ ++SE+++ C KE+++T+
Sbjct: 21  EQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTV 80

Query: 71  APEHVLKALEVLGFSEYI--AEVYAAYEQHRIET 103
             + +L A+  LGF +Y+   ++Y A  +   ET
Sbjct: 81  NGDDLLWAMATLGFEDYLEPLKIYLARYREVFET 114

[Close]
BLAST of Csa1G015800 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 71.2 bits (173), Expect = 6.2e-13
Identity = 36/112 (32.14%), Postives = 66/112 (58.93%), Query Frame = 1 

Query: 11  KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTI 70
           ++D  LP A +++I+K+ LP + ++++DA++ + EC  EFI+ V+ E+++ C KE+++TI
Sbjct: 27  EQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTI 86

Query: 71  APEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTEEE 123
             + +L A+  LGF +Y+ E    Y Q   E   +    G+   G E+ E +
Sbjct: 87  NGDDLLWAMTTLGFEDYV-EPLKVYLQRFREIEGERTGLGRPQTGGEVGEHQ 137

[Close]
BLAST of Csa1G015800 vs. TAIR10
Match: AT2G37060.1 (AT2G37060.1 nuclear factor Y, subunit B8)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-12
Identity = 35/102 (34.31%), Postives = 64/102 (62.75%), Query Frame = 1 

Query: 11  KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTI 70
           ++D  LP A +++I+K  LP + ++A+DA++++ EC  EFI+ V+SE+++ C +E+++TI
Sbjct: 30  EQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTI 89

Query: 71  APEHVLKALEVLGFSEYI--AEVYAAYEQHRIETMQDSLKGG 111
             + +L A+  LGF +Y+   +VY    +      + S KGG
Sbjct: 90  NGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGG 131

[Close]
BLAST of Csa1G015800 vs. NCBI nr
Match: gi|449440901|ref|XP_004138222.1| (PREDICTED: protein Dr1 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 307.8 bits (787), Expect = 1.1e-80
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 

Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES
Sbjct: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 156

[Close]
BLAST of Csa1G015800 vs. NCBI nr
Match: gi|659106495|ref|XP_008453352.1| (PREDICTED: protein Dr1 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 303.9 bits (777), Expect = 1.6e-79
Identity = 154/156 (98.72%), Postives = 154/156 (98.72%), Query Frame = 1 

Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VCSKEEKRTIAPEHVLKALEVLGFSEYI EVYAAYEQHRIETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEALAEQQRMFAEARARMNGSNTAPKQ EPEQSLES
Sbjct: 121 EEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 156

[Close]
BLAST of Csa1G015800 vs. NCBI nr
Match: gi|778656255|ref|XP_011648700.1| (PREDICTED: protein Dr1 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 302.0 bits (772), Expect = 6.1e-79
Identity = 156/160 (97.50%), Postives = 156/160 (97.50%), Query Frame = 1 

Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETM----QDSLKGGKWSNGA 120
           VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETM    QDSLKGGKWSNGA
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMKLLQQDSLKGGKWSNGA 120

Query: 121 EMTEEEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EMTEEEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES
Sbjct: 121 EMTEEEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 160

[Close]
BLAST of Csa1G015800 vs. NCBI nr
Match: gi|659106493|ref|XP_008453351.1| (PREDICTED: protein Dr1 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 298.1 bits (762), Expect = 8.9e-78
Identity = 154/160 (96.25%), Postives = 154/160 (96.25%), Query Frame = 1 

Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETM----QDSLKGGKWSNGA 120
           VCSKEEKRTIAPEHVLKALEVLGFSEYI EVYAAYEQHRIETM    QDSLKGGKWSNGA
Sbjct: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRIETMKLLQQDSLKGGKWSNGA 120

Query: 121 EMTEEEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EMTEEEALAEQQRMFAEARARMNGSNTAPKQ EPEQSLES
Sbjct: 121 EMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 160

[Close]
BLAST of Csa1G015800 vs. NCBI nr
Match: gi|590669369|ref|XP_007037755.1| (Nuclear factor Y, subunit B13 isoform 2 [Theobroma cacao])

HSP 1 Score: 283.9 bits (725), Expect = 1.7e-73
Identity = 140/156 (89.74%), Postives = 149/156 (95.51%), Query Frame = 1 

Query: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNE 60
           MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINL+SSESN+
Sbjct: 1   MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESND 60

Query: 61  VCSKEEKRTIAPEHVLKALEVLGFSEYIAEVYAAYEQHRIETMQDSLKGGKWSNGAEMTE 120
           VC++E+KRTIAPEHVLKALEVLGF EYI EVYAAYEQH+IETMQDSLKGGKWSNGAEMTE
Sbjct: 61  VCNREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKIETMQDSLKGGKWSNGAEMTE 120

Query: 121 EEALAEQQRMFAEARARMNGSNTAPKQSEPEQSLES 157
           EEA+AEQQRMFAEARARMNG   APKQ +P+ SLES
Sbjct: 121 EEAVAEQQRMFAEARARMNGGAVAPKQPDPDPSLES 156

The following BLAST results are available for this feature:
BLAST of Csa1G015800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NC2B_ARATH9.2e-6780.77Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1[more]
NC2B_DICDI9.6e-3246.48Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1[more]
NC2B_SCHPO4.9e-2844.53Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces pombe (strain 97... [more]
NC2B_CHICK4.6e-2646.77Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1[more]
NC2B_HUMAN4.6e-2646.77Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1[more]
BLAST of Csa1G015800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPP9_CUCSA7.8e-81100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015800 PE=4 SV=1[more]
A0A061FYD7_THECC1.2e-7389.74Nuclear factor Y, subunit B13 isoform 2 OS=Theobroma cacao GN=TCM_014477 PE=4 SV... [more]
A0A067J8H8_JATCU3.5e-7391.72Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05835 PE=4 SV=1[more]
A0A0D2LS17_GOSRA3.5e-7389.10Uncharacterized protein OS=Gossypium raimondii GN=B456_001G064700 PE=4 SV=1[more]
A0A0B0MXM4_GOSAR3.5e-7389.10Protein Dr1-like protein OS=Gossypium arboreum GN=F383_10506 PE=4 SV=1[more]
BLAST of Csa1G015800 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23090.25.2e-6880.77 nuclear factor Y, subunit B13[more]
AT5G08190.11.7e-6681.58 nuclear factor Y, subunit B12[more]
AT2G38880.81.6e-1335.11 nuclear factor Y, subunit B1[more]
AT5G47640.16.2e-1332.14 nuclear factor Y, subunit B2[more]
AT2G37060.11.8e-1234.31 nuclear factor Y, subunit B8[more]
BLAST of Csa1G015800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449440901|ref|XP_004138222.1|1.1e-80100.00PREDICTED: protein Dr1 homolog isoform X2 [Cucumis sativus][more]
gi|659106495|ref|XP_008453352.1|1.6e-7998.72PREDICTED: protein Dr1 homolog isoform X2 [Cucumis melo][more]
gi|778656255|ref|XP_011648700.1|6.1e-7997.50PREDICTED: protein Dr1 homolog isoform X1 [Cucumis sativus][more]
gi|659106493|ref|XP_008453351.1|8.9e-7896.25PREDICTED: protein Dr1 homolog isoform X1 [Cucumis melo][more]
gi|590669369|ref|XP_007037755.1|1.7e-7389.74Nuclear factor Y, subunit B13 isoform 2 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU111377cucumber EST collection version 3.0transcribed_cluster
CU128160cucumber EST collection version 3.0transcribed_cluster
CU145098cucumber EST collection version 3.0transcribed_cluster
CU145405cucumber EST collection version 3.0transcribed_cluster
CU150747cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G015800.1Csa1G015800.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU145098CU145098transcribed_cluster
CU145405CU145405transcribed_cluster
CU150747CU150747transcribed_cluster
CU128160CU128160transcribed_cluster
CU111377CU111377transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 14..79
score: 7.5
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 8..141
score: 5.7
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 12..142
score: 5.03
NoneNo IPR availablePANTHERPTHR11064CCAAT-BINDING TRANSCRIPTION FACTOR-RELATEDcoord: 1..156
score: 5.8E
NoneNo IPR availablePANTHERPTHR11064:SF35PROTEIN DR1 HOMOLOGcoord: 1..156
score: 5.8E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G015800Cla019003Watermelon (97103) v1cuwmB095
Csa1G015800MELO3C017276Melon (DHL92) v3.5.1cumeB055
Csa1G015800ClCG06G015130Watermelon (Charleston Gray)cuwcgB082
Csa1G015800Lsi06G013610Bottle gourd (USVL1VR-Ls)culsiB071
Csa1G015800MELO3C017276.2Melon (DHL92) v3.6.1cumedB047
Csa1G015800Cla97C06G124610Watermelon (97103) v2cuwmbB079
Csa1G015800Bhi02G000012Wax gourdcuwgoB114
Csa1G015800CSPI01G03480Wild cucumber (PI 183967)cpicuB000
Csa1G015800Cucsa.198760Cucumber (Gy14) v1cgycuB299
Csa1G015800CmaCh10G002600Cucurbita maxima (Rimu)cmacuB061
Csa1G015800CmaCh11G002510Cucurbita maxima (Rimu)cmacuB110
Csa1G015800CmoCh10G002780Cucurbita moschata (Rifu)cmocuB050
Csa1G015800CmoCh11G002570Cucurbita moschata (Rifu)cmocuB095
Csa1G015800Cp4.1LG04g14210Cucurbita pepo (Zucchini)cpecuB643
Csa1G015800CsGy1G003430Cucumber (Gy14) v2cgybcuB001
Csa1G015800Carg09159Silver-seed gourdcarcuB0621
Csa1G015800Carg17898Silver-seed gourdcarcuB0491
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G015800Watermelon (97103) v2cuwmbB055
Csa1G015800Watermelon (97103) v2cuwmbB061
Csa1G015800Cucumber (Chinese Long) v2cucuB000
Csa1G015800Cucumber (Chinese Long) v2cucuB030
Csa1G015800Cucumber (Gy14) v1cgycuB405
Csa1G015800Cucurbita maxima (Rimu)cmacuB087
Csa1G015800Cucurbita maxima (Rimu)cmacuB221
Csa1G015800Cucurbita maxima (Rimu)cmacuB393
Csa1G015800Cucurbita maxima (Rimu)cmacuB686
Csa1G015800Cucurbita moschata (Rifu)cmocuB076
Csa1G015800Cucurbita moschata (Rifu)cmocuB207
Csa1G015800Cucurbita moschata (Rifu)cmocuB385
Csa1G015800Melon (DHL92) v3.5.1cumeB010
Csa1G015800Watermelon (Charleston Gray)cuwcgB058
Csa1G015800Watermelon (97103) v1cuwmB039
Csa1G015800Watermelon (97103) v1cuwmB063
Csa1G015800Cucurbita pepo (Zucchini)cpecuB033
Csa1G015800Cucurbita pepo (Zucchini)cpecuB352
Csa1G015800Cucurbita pepo (Zucchini)cpecuB381
Csa1G015800Cucurbita pepo (Zucchini)cpecuB509
Csa1G015800Bottle gourd (USVL1VR-Ls)culsiB025
Csa1G015800Bottle gourd (USVL1VR-Ls)culsiB054
Csa1G015800Cucumber (Gy14) v2cgybcuB005
Csa1G015800Cucumber (Gy14) v2cgybcuB196
Csa1G015800Melon (DHL92) v3.6.1cumedB005
Csa1G015800Silver-seed gourdcarcuB0416
Csa1G015800Silver-seed gourdcarcuB0543
Csa1G015800Silver-seed gourdcarcuB0622