MELO3C024110 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024110
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Elongation factor P
Location	chr1 : 9388691 .. 9389472 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGCAAAACATTCTAATCCTAATATCTTATAAGTACACATTGATCTCCATAACTATGTACACTTCACATACTATAAGCAGCTGCAGCTTAAACTCCCCTTGAGAGTGTTCTCCAATGGGTAGGCACGATAGTGAACCTACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGATTTAGACAATTGCAGAAAAACAAGCAAAAAAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCAAATAGGGTCGATGCCTCGATAATGCATTTAGAACCAGAACCAAATGGCTCGTTGACCTCAAGAGTTTTGGATTCCAATTCCCTCTCCCTTGGTTTGAATTTGAAGCATAATGAGGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGGTGCCAAGTGACACCAAGTTCGGGCCCGAAAACTCATTCATGGTGAGTACATTAAGAAGTTTCGATACAAATGTCGATACCACTCTTCATCTATAGATAATTTCTTCACCTAGTATTTCTGTTAGCTTTATTTGCTTGGTTCTCTCCCCACCTAAGAATGAAAAAACGTGTGTTGAATTGATATCTGATGTGATCAATATGCATTCTATTGATGATGTCCTAGACATTTTGTAAGATGTCTATTTGCTTGGTTAGTTTAGCTCCAGGAATGTGCATAATGAGAGAGAGAGAGAGGGAAGGAAGGGAAGTGATGGAAAAACAACTCTTAAGTGAGACCATGTCTTTTACCAATTCCATTATGTTTAAATCTCTCTCTTTGGG

mRNA sequence

AAGAGCAAAACATTCTAATCCTAATATCTTATAAGTACACATTGATCTCCATAACTATGTACACTTCACATACTATAAGCAGCTGCAGCTTAAACTCCCCTTGAGAGTGTTCTCCAATGGGTAGGCACGATAGTGAACCTACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGATTTAGACAATTGCAGAAAAACAAGCAAAAAAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCAAATAGGGTCGATGCCTCGATAATGCATTTAGAACCAGAACCAAATGGCTCGTTGACCTCAAGAGTTTTGGATTCCAATTCCCTCTCCCTTGGTTTGAATTTGAAGCATAATGAGGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGGTGCCAAGTGACACCAAGTTCGGGCCCGAAAACTCATTCATGGTGAGTACATTAAGAAGTTTCGATACAAATGTCGATACCACTCTTCATCTATAGATAATTTCTTCACCTAGTATTTCTGTTAGCTTTATTTGCTTGGTTCTCTCCCCACCTAAGAATGAAAAAACGTGTGTTGAATTGATATCTGATGTGATCAATATGCATTCTATTGATGATGTCCTAGACATTTTGTAAGATGTCTATTTGCTTGGTTAGTTTAGCTCCAGGAATGTGCATAATGAGAGAGAGAGAGAGGGAAGGAAGGGAAGTGATGGAAAAACAACTCTTAAGTGAGACCATGTCTTTTACCAATTCCATTATGTTTAAATCTCTCTCTTTGGG

Coding sequence (CDS)

ATGGGTAGGCACGATAGTGAACCTACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGATTTAGACAATTGCAGAAAAACAAGCAAAAAAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCAAATAGGGTCGATGCCTCGATAATGCATTTAGAACCAGAACCAAATGGCTCGTTGACCTCAAGAGTTTTGGATTCCAATTCCCTCTCCCTTGGTTTGAATTTGAAGCATAATGAGGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGGTGCCAAGTGACACCAAGTTCGGGCCCGAAAACTCATTCATGGTGAGTACATTAAGAAGTTTCGATACAAATGTCGATACCACTCTTCATCTATAG

Protein sequence

MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNGSLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDTNVDTTLHL*

Homology

[Close]

BLAST of MELO3C024110 vs. TrEMBL
Match: A0A0A0K617_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G272125 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.6e-50
Identity = 110/127 (86.61%), Postives = 116/127 (91.34%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGRH+SEPTMVGTSIALLQERFRQLQKNKQ+RERKELLNLLFESNRVDASIMHL  EPNG
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHL--EPNG 60

Query: 61  SLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120
           S TSR LDSNSLSLGLNL++N GKQVDIDIHEARS+P DTKF   NSFMVST RSFD+ N
Sbjct: 61  SSTSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPN 120

Query: 121 VDTTLHL 127
           VDTTLHL
Sbjct: 121 VDTTLHL 125

[Close]

BLAST of MELO3C024110 vs. TrEMBL
Match: G7KEN3_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_5g097300 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-16
Identity = 60/127 (47.24%), Postives = 78/127 (61.42%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGR D++PTMV +SIALLQERFRQL+K K++RE K+LL LL   N   AS   L   PN 
Sbjct: 1   MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLRLLSTENNTSASTQRL-VVPN- 60

Query: 61  SLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120
              +R    +SLSLGLNL   +G        +  ++ S+T   P +    ST R+FDT +
Sbjct: 61  ---NRQTHHDSLSLGLNLTSKQG--------DKSTMKSNTSLSPWSQGASSTSRNFDTSD 114

Query: 121 VDTTLHL 127
           VDT+LHL
Sbjct: 121 VDTSLHL 114

[Close]

BLAST of MELO3C024110 vs. TrEMBL
Match: A0A061DKX2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_002329 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-14
Identity = 58/132 (43.94%), Postives = 78/132 (59.09%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEP---- 60
           MGR   +PTMV +SIALLQERFRQLQK ++KRE KELL L  ES R+  + M  EP    
Sbjct: 1   MGRQGGDPTMVSSSIALLQERFRQLQKVREKREEKELLKLFAESERLSPT-MRYEPNRLS 60

Query: 61  -EPNGSLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRS 120
            +P   L  R    +SLSLGLN    + +Q D     A  +P+     P ++   S  ++
Sbjct: 61  FQPEVILPYRQPPQDSLSLGLN---PQSRQTDF---RAMGIPASPSSWPNSAATSSRSKN 120

Query: 121 FD-TNVDTTLHL 127
           F+ ++VDT+LHL
Sbjct: 121 FENSDVDTSLHL 125

[Close]

BLAST of MELO3C024110 vs. TrEMBL
Match: I3SBI7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.3e-13
Identity = 62/135 (45.93%), Postives = 78/135 (57.78%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLL--FESNRVDASIMHLEPEP 60
           MGR D +PTMV +SIALLQERFRQL+K KQKRE KEL+ LL   ES R  +S M+  P  
Sbjct: 1   MGRQDDDPTMVNSSIALLQERFRQLEKVKQKREGKELVRLLSSSESQRNTSSSMY-NPAS 60

Query: 61  NGSLTSRVLDSNS-----LSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTL 120
             S+  R+    S     LSLGLNL   +G   D D +     P  +    + +   ST 
Sbjct: 61  QQSMGVRLPPHRSIIHDPLSLGLNLATKQG---DHDHNNTMKSPQSSNLWSKGA---STS 120

Query: 121 RSFD--TNVDTTLHL 127
           R FD  ++VDT+LHL
Sbjct: 121 RKFDNYSDVDTSLHL 128

[Close]

BLAST of MELO3C024110 vs. TrEMBL
Match: A0A0D2M108_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G220800 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.7e-12
Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGR   +PTM  +SIALLQERFRQLQK +QKRE KELL L  E +R  ++  +   EP  
Sbjct: 1   MGRQSGDPTMASSSIALLQERFRQLQKVRQKREAKELLKLFSEPDRAGSTKSY---EPEV 60

Query: 61  SLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSF--DT 120
            L  R    +SL+LGLN   +  +Q D     A  +P+ T     ++   S+   +  ++
Sbjct: 61  HLPYRHPQQDSLTLGLN---SLSRQTDF---RAMGIPASTSLWTNSAPTSSSTSKYLENS 119

Query: 121 NVDTTLHL 127
           +VDT+LHL
Sbjct: 121 DVDTSLHL 119

[Close]

BLAST of MELO3C024110 vs. NCBI nr
Match: gi|700189136|gb|KGN44369.1| (hypothetical protein Csa_7G272125 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 3.7e-50
Identity = 110/127 (86.61%), Postives = 116/127 (91.34%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGRH+SEPTMVGTSIALLQERFRQLQKNKQ+RERKELLNLLFESNRVDASIMHL  EPNG
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHL--EPNG 60

Query: 61  SLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120
           S TSR LDSNSLSLGLNL++N GKQVDIDIHEARS+P DTKF   NSFMVST RSFD+ N
Sbjct: 61  SSTSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPN 120

Query: 121 VDTTLHL 127
           VDTTLHL
Sbjct: 121 VDTTLHL 125

[Close]

BLAST of MELO3C024110 vs. NCBI nr
Match: gi|357495321|ref|XP_003617949.1| (hypothetical protein MTR_5g097300 [Medicago truncatula])

HSP 1 Score: 92.4 bits (228), Expect = 6.0e-16
Identity = 60/127 (47.24%), Postives = 78/127 (61.42%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGR D++PTMV +SIALLQERFRQL+K K++RE K+LL LL   N   AS   L   PN 
Sbjct: 1   MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLRLLSTENNTSASTQRL-VVPN- 60

Query: 61  SLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120
              +R    +SLSLGLNL   +G        +  ++ S+T   P +    ST R+FDT +
Sbjct: 61  ---NRQTHHDSLSLGLNLTSKQG--------DKSTMKSNTSLSPWSQGASSTSRNFDTSD 114

Query: 121 VDTTLHL 127
           VDT+LHL
Sbjct: 121 VDTSLHL 114

[Close]

BLAST of MELO3C024110 vs. NCBI nr
Match: gi|590712129|ref|XP_007049302.1| (Uncharacterized protein TCM_002329 [Theobroma cacao])

HSP 1 Score: 86.3 bits (212), Expect = 4.3e-14
Identity = 58/132 (43.94%), Postives = 78/132 (59.09%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEP---- 60
           MGR   +PTMV +SIALLQERFRQLQK ++KRE KELL L  ES R+  + M  EP    
Sbjct: 1   MGRQGGDPTMVSSSIALLQERFRQLQKVREKREEKELLKLFAESERLSPT-MRYEPNRLS 60

Query: 61  -EPNGSLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRS 120
            +P   L  R    +SLSLGLN    + +Q D     A  +P+     P ++   S  ++
Sbjct: 61  FQPEVILPYRQPPQDSLSLGLN---PQSRQTDF---RAMGIPASPSSWPNSAATSSRSKN 120

Query: 121 FD-TNVDTTLHL 127
           F+ ++VDT+LHL
Sbjct: 121 FENSDVDTSLHL 125

[Close]

BLAST of MELO3C024110 vs. NCBI nr
Match: gi|388499126|gb|AFK37629.1| (unknown [Lotus japonicus])

HSP 1 Score: 82.8 bits (203), Expect = 4.7e-13
Identity = 62/135 (45.93%), Postives = 78/135 (57.78%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLL--FESNRVDASIMHLEPEP 60
           MGR D +PTMV +SIALLQERFRQL+K KQKRE KEL+ LL   ES R  +S M+  P  
Sbjct: 1   MGRQDDDPTMVNSSIALLQERFRQLEKVKQKREGKELVRLLSSSESQRNTSSSMY-NPAS 60

Query: 61  NGSLTSRVLDSNS-----LSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTL 120
             S+  R+    S     LSLGLNL   +G   D D +     P  +    + +   ST 
Sbjct: 61  QQSMGVRLPPHRSIIHDPLSLGLNLATKQG---DHDHNNTMKSPQSSNLWSKGA---STS 120

Query: 121 RSFD--TNVDTTLHL 127
           R FD  ++VDT+LHL
Sbjct: 121 RKFDNYSDVDTSLHL 128

[Close]

BLAST of MELO3C024110 vs. NCBI nr
Match: gi|502099857|ref|XP_004491576.1| (PREDICTED: uncharacterized protein LOC101505296 [Cicer arietinum])

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 57/128 (44.53%), Postives = 77/128 (60.16%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MG  D++PTMV +SIALLQERFRQL+K K++RE K+L+ LL   N    +I     +PN 
Sbjct: 1   MGGQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLVRLLSSQNN---TIQQRLVDPN- 60

Query: 61  SLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFD--T 120
                + D +SLSLGLNL +   KQ D   H+     S +   P +    ST R+FD  +
Sbjct: 61  --HRPLYDHDSLSLGLNLTN---KQSD---HQNNMKLSSSSLSPWSQGESSTSRNFDNYS 116

Query: 121 NVDTTLHL 127
           +VDT+LHL
Sbjct: 121 DVDTSLHL 116

The following BLAST results are available for this feature:

BLAST of MELO3C024110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K617_CUCSA	2.6e-50	86.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G272125 PE=4 SV=1	[more]
G7KEN3_MEDTR	4.2e-16	47.24	Uncharacterized protein OS=Medicago truncatula GN=MTR_5g097300 PE=4 SV=1	[more]
A0A061DKX2_THECC	3.0e-14	43.94	Uncharacterized protein OS=Theobroma cacao GN=TCM_002329 PE=4 SV=1	[more]
I3SBI7_LOTJA	3.3e-13	45.93	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A0D2M108_GOSRA	3.7e-12	41.41	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G220800 PE=4 SV=1	[more]

BLAST of MELO3C024110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189136\|gb\|KGN44369.1\|	3.7e-50	86.61	hypothetical protein Csa_7G272125 [Cucumis sativus]	[more]
gi\|357495321\|ref\|XP_003617949.1\|	6.0e-16	47.24	hypothetical protein MTR_5g097300 [Medicago truncatula]	[more]
gi\|590712129\|ref\|XP_007049302.1\|	4.3e-14	43.94	Uncharacterized protein TCM_002329 [Theobroma cacao]	[more]
gi\|388499126\|gb\|AFK37629.1\|	4.7e-13	45.93	unknown [Lotus japonicus]	[more]
gi\|502099857\|ref\|XP_004491576.1\|	1.4e-12	44.53	PREDICTED: uncharacterized protein LOC101505296 [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU46336	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024110T1	MELO3C024110T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU46336	MU46336	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 15..35 scor
None	No IPR available	PANTHER	PTHR34570	FAMILY NOT NAMED	coord: 2..126 score: 1.3
None	No IPR available	PANTHER	PTHR34570:SF2	SUBFAMILY NOT NAMED	coord: 2..126 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C024110	Cucsa.240630	Cucumber (Gy14) v1	cgymeB407
MELO3C024110	CsaV3_7G023710	Cucumber (Chinese Long) v3	cucmeB545

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024110	Watermelon (97103) v2	mewmbB221
MELO3C024110	Wax gourd	mewgoB251
MELO3C024110	Cucurbita maxima (Rimu)	cmameB400
MELO3C024110	Cucurbita moschata (Rifu)	cmomeB391
MELO3C024110	Wild cucumber (PI 183967)	cpimeB532
MELO3C024110	Cucumber (Chinese Long) v2	cumeB524
MELO3C024110	Watermelon (97103) v1	mewmB196
MELO3C024110	Cucurbita pepo (Zucchini)	cpemeB393
MELO3C024110	Bottle gourd (USVL1VR-Ls)	lsimeB200
MELO3C024110	Cucumber (Gy14) v2	cgybmeB465