MELO3C024110T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024110T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Elongation factor P
Location	chr1 : 9388691 .. 9389472 (-)
Sequence length	782

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGCAAAACATTCTAATCCTAATATCTTATAAGTACACATTGATCTCCATAACTATGTACACTTCACATACTATAAGCAGCTGCAGCTTAAACTCCCCTTGAGAGTGTTCTCCAATGGGTAGGCACGATAGTGAACCTACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGATTTAGACAATTGCAGAAAAACAAGCAAAAAAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCAAATAGGGTCGATGCCTCGATAATGCATTTAGAACCAGAACCAAATGGCTCGTTGACCTCAAGAGTTTTGGATTCCAATTCCCTCTCCCTTGGTTTGAATTTGAAGCATAATGAGGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGGTGCCAAGTGACACCAAGTTCGGGCCCGAAAACTCATTCATGGTGAGTACATTAAGAAGTTTCGATACAAATGTCGATACCACTCTTCATCTATAGATAATTTCTTCACCTAGTATTTCTGTTAGCTTTATTTGCTTGGTTCTCTCCCCACCTAAGAATGAAAAAACGTGTGTTGAATTGATATCTGATGTGATCAATATGCATTCTATTGATGATGTCCTAGACATTTTGTAAGATGTCTATTTGCTTGGTTAGTTTAGCTCCAGGAATGTGCATAATGAGAGAGAGAGAGAGGGAAGGAAGGGAAGTGATGGAAAAACAACTCTTAAGTGAGACCATGTCTTTTACCAATTCCATTATGTTTAAATCTCTCTCTTTGGG

mRNA sequence

AAGAGCAAAACATTCTAATCCTAATATCTTATAAGTACACATTGATCTCCATAACTATGTACACTTCACATACTATAAGCAGCTGCAGCTTAAACTCCCCTTGAGAGTGTTCTCCAATGGGTAGGCACGATAGTGAACCTACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGATTTAGACAATTGCAGAAAAACAAGCAAAAAAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCAAATAGGGTCGATGCCTCGATAATGCATTTAGAACCAGAACCAAATGGCTCGTTGACCTCAAGAGTTTTGGATTCCAATTCCCTCTCCCTTGGTTTGAATTTGAAGCATAATGAGGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGGTGCCAAGTGACACCAAGTTCGGGCCCGAAAACTCATTCATGGTGAGTACATTAAGAAGTTTCGATACAAATGTCGATACCACTCTTCATCTATAGATAATTTCTTCACCTAGTATTTCTGTTAGCTTTATTTGCTTGGTTCTCTCCCCACCTAAGAATGAAAAAACGTGTGTTGAATTGATATCTGATGTGATCAATATGCATTCTATTGATGATGTCCTAGACATTTTGTAAGATGTCTATTTGCTTGGTTAGTTTAGCTCCAGGAATGTGCATAATGAGAGAGAGAGAGAGGGAAGGAAGGGAAGTGATGGAAAAACAACTCTTAAGTGAGACCATGTCTTTTACCAATTCCATTATGTTTAAATCTCTCTCTTTGGG

Coding sequence (CDS)

ATGGGTAGGCACGATAGTGAACCTACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGATTTAGACAATTGCAGAAAAACAAGCAAAAAAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCAAATAGGGTCGATGCCTCGATAATGCATTTAGAACCAGAACCAAATGGCTCGTTGACCTCAAGAGTTTTGGATTCCAATTCCCTCTCCCTTGGTTTGAATTTGAAGCATAATGAGGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGGTGCCAAGTGACACCAAGTTCGGGCCCGAAAACTCATTCATGGTGAGTACATTAAGAAGTTTCGATACAAATGTCGATACCACTCTTCATCTATAG

Protein sequence

MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNGSLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDTNVDTTLHL*

Homology

[Close]

BLAST of MELO3C024110T1 vs. TrEMBL
Match: A0A0A0K617_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G272125 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.6e-50
Identity = 110/127 (86.61%), Postives = 116/127 (91.34%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGRH+SEPTMVGTSIALLQERFRQLQKNKQ+RERKELLNLLFESNRVDASIMHL  EPNG
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHL--EPNG 60

Query: 61  SLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120
           S TSR LDSNSLSLGLNL++N GKQVDIDIHEARS+P DTKF   NSFMVST RSFD+ N
Sbjct: 61  SSTSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPN 120

Query: 121 VDTTLHL 127
           VDTTLHL
Sbjct: 121 VDTTLHL 125

[Close]

BLAST of MELO3C024110T1 vs. TrEMBL
Match: G7KEN3_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_5g097300 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-16
Identity = 60/127 (47.24%), Postives = 78/127 (61.42%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGR D++PTMV +SIALLQERFRQL+K K++RE K+LL LL   N   AS   L   PN 
Sbjct: 1   MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLRLLSTENNTSASTQRL-VVPN- 60

Query: 61  SLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120
              +R    +SLSLGLNL   +G        +  ++ S+T   P +    ST R+FDT +
Sbjct: 61  ---NRQTHHDSLSLGLNLTSKQG--------DKSTMKSNTSLSPWSQGASSTSRNFDTSD 114

Query: 121 VDTTLHL 127
           VDT+LHL
Sbjct: 121 VDTSLHL 114

[Close]

BLAST of MELO3C024110T1 vs. TrEMBL
Match: A0A061DKX2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_002329 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-14
Identity = 58/132 (43.94%), Postives = 78/132 (59.09%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEP---- 60
           MGR   +PTMV +SIALLQERFRQLQK ++KRE KELL L  ES R+  + M  EP    
Sbjct: 1   MGRQGGDPTMVSSSIALLQERFRQLQKVREKREEKELLKLFAESERLSPT-MRYEPNRLS 60

Query: 61  -EPNGSLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRS 120
            +P   L  R    +SLSLGLN    + +Q D     A  +P+     P ++   S  ++
Sbjct: 61  FQPEVILPYRQPPQDSLSLGLN---PQSRQTDF---RAMGIPASPSSWPNSAATSSRSKN 120

Query: 121 FD-TNVDTTLHL 127
           F+ ++VDT+LHL
Sbjct: 121 FENSDVDTSLHL 125

[Close]

BLAST of MELO3C024110T1 vs. TrEMBL
Match: I3SBI7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.3e-13
Identity = 62/135 (45.93%), Postives = 78/135 (57.78%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLL--FESNRVDASIMHLEPEP 60
           MGR D +PTMV +SIALLQERFRQL+K KQKRE KEL+ LL   ES R  +S M+  P  
Sbjct: 1   MGRQDDDPTMVNSSIALLQERFRQLEKVKQKREGKELVRLLSSSESQRNTSSSMY-NPAS 60

Query: 61  NGSLTSRVLDSNS-----LSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTL 120
             S+  R+    S     LSLGLNL   +G   D D +     P  +    + +   ST 
Sbjct: 61  QQSMGVRLPPHRSIIHDPLSLGLNLATKQG---DHDHNNTMKSPQSSNLWSKGA---STS 120

Query: 121 RSFD--TNVDTTLHL 127
           R FD  ++VDT+LHL
Sbjct: 121 RKFDNYSDVDTSLHL 128

[Close]

BLAST of MELO3C024110T1 vs. TrEMBL
Match: A0A0D2M108_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G220800 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.7e-12
Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGR   +PTM  +SIALLQERFRQLQK +QKRE KELL L  E +R  ++  +   EP  
Sbjct: 1   MGRQSGDPTMASSSIALLQERFRQLQKVRQKREAKELLKLFSEPDRAGSTKSY---EPEV 60

Query: 61  SLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSF--DT 120
            L  R    +SL+LGLN   +  +Q D     A  +P+ T     ++   S+   +  ++
Sbjct: 61  HLPYRHPQQDSLTLGLN---SLSRQTDF---RAMGIPASTSLWTNSAPTSSSTSKYLENS 119

Query: 121 NVDTTLHL 127
           +VDT+LHL
Sbjct: 121 DVDTSLHL 119

[Close]

BLAST of MELO3C024110T1 vs. NCBI nr
Match: gi|700189136|gb|KGN44369.1| (hypothetical protein Csa_7G272125 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 3.7e-50
Identity = 110/127 (86.61%), Postives = 116/127 (91.34%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGRH+SEPTMVGTSIALLQERFRQLQKNKQ+RERKELLNLLFESNRVDASIMHL  EPNG
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHL--EPNG 60

Query: 61  SLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120
           S TSR LDSNSLSLGLNL++N GKQVDIDIHEARS+P DTKF   NSFMVST RSFD+ N
Sbjct: 61  SSTSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPN 120

Query: 121 VDTTLHL 127
           VDTTLHL
Sbjct: 121 VDTTLHL 125

[Close]

BLAST of MELO3C024110T1 vs. NCBI nr
Match: gi|357495321|ref|XP_003617949.1| (hypothetical protein MTR_5g097300 [Medicago truncatula])

HSP 1 Score: 92.4 bits (228), Expect = 6.0e-16
Identity = 60/127 (47.24%), Postives = 78/127 (61.42%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGR D++PTMV +SIALLQERFRQL+K K++RE K+LL LL   N   AS   L   PN 
Sbjct: 1   MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLRLLSTENNTSASTQRL-VVPN- 60

Query: 61  SLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120
              +R    +SLSLGLNL   +G        +  ++ S+T   P +    ST R+FDT +
Sbjct: 61  ---NRQTHHDSLSLGLNLTSKQG--------DKSTMKSNTSLSPWSQGASSTSRNFDTSD 114

Query: 121 VDTTLHL 127
           VDT+LHL
Sbjct: 121 VDTSLHL 114

[Close]

BLAST of MELO3C024110T1 vs. NCBI nr
Match: gi|590712129|ref|XP_007049302.1| (Uncharacterized protein TCM_002329 [Theobroma cacao])

HSP 1 Score: 86.3 bits (212), Expect = 4.3e-14
Identity = 58/132 (43.94%), Postives = 78/132 (59.09%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEP---- 60
           MGR   +PTMV +SIALLQERFRQLQK ++KRE KELL L  ES R+  + M  EP    
Sbjct: 1   MGRQGGDPTMVSSSIALLQERFRQLQKVREKREEKELLKLFAESERLSPT-MRYEPNRLS 60

Query: 61  -EPNGSLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRS 120
            +P   L  R    +SLSLGLN    + +Q D     A  +P+     P ++   S  ++
Sbjct: 61  FQPEVILPYRQPPQDSLSLGLN---PQSRQTDF---RAMGIPASPSSWPNSAATSSRSKN 120

Query: 121 FD-TNVDTTLHL 127
           F+ ++VDT+LHL
Sbjct: 121 FENSDVDTSLHL 125

[Close]

BLAST of MELO3C024110T1 vs. NCBI nr
Match: gi|388499126|gb|AFK37629.1| (unknown [Lotus japonicus])

HSP 1 Score: 82.8 bits (203), Expect = 4.7e-13
Identity = 62/135 (45.93%), Postives = 78/135 (57.78%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLL--FESNRVDASIMHLEPEP 60
           MGR D +PTMV +SIALLQERFRQL+K KQKRE KEL+ LL   ES R  +S M+  P  
Sbjct: 1   MGRQDDDPTMVNSSIALLQERFRQLEKVKQKREGKELVRLLSSSESQRNTSSSMY-NPAS 60

Query: 61  NGSLTSRVLDSNS-----LSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTL 120
             S+  R+    S     LSLGLNL   +G   D D +     P  +    + +   ST 
Sbjct: 61  QQSMGVRLPPHRSIIHDPLSLGLNLATKQG---DHDHNNTMKSPQSSNLWSKGA---STS 120

Query: 121 RSFD--TNVDTTLHL 127
           R FD  ++VDT+LHL
Sbjct: 121 RKFDNYSDVDTSLHL 128

[Close]

BLAST of MELO3C024110T1 vs. NCBI nr
Match: gi|502099857|ref|XP_004491576.1| (PREDICTED: uncharacterized protein LOC101505296 [Cicer arietinum])

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 57/128 (44.53%), Postives = 77/128 (60.16%), Query Frame = 1


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MG  D++PTMV +SIALLQERFRQL+K K++RE K+L+ LL   N    +I     +PN 
Sbjct: 1   MGGQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLVRLLSSQNN---TIQQRLVDPN- 60

Query: 61  SLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFD--T 120
                + D +SLSLGLNL +   KQ D   H+     S +   P +    ST R+FD  +
Sbjct: 61  --HRPLYDHDSLSLGLNLTN---KQSD---HQNNMKLSSSSLSPWSQGESSTSRNFDNYS 116

Query: 121 NVDTTLHL 127
           +VDT+LHL
Sbjct: 121 DVDTSLHL 116

The following BLAST results are available for this feature:

BLAST of MELO3C024110T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K617_CUCSA	2.6e-50	86.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G272125 PE=4 SV=1	[more]
G7KEN3_MEDTR	4.2e-16	47.24	Uncharacterized protein OS=Medicago truncatula GN=MTR_5g097300 PE=4 SV=1	[more]
A0A061DKX2_THECC	3.0e-14	43.94	Uncharacterized protein OS=Theobroma cacao GN=TCM_002329 PE=4 SV=1	[more]
I3SBI7_LOTJA	3.3e-13	45.93	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A0D2M108_GOSRA	3.7e-12	41.41	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G220800 PE=4 SV=1	[more]

BLAST of MELO3C024110T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189136\|gb\|KGN44369.1\|	3.7e-50	86.61	hypothetical protein Csa_7G272125 [Cucumis sativus]	[more]
gi\|357495321\|ref\|XP_003617949.1\|	6.0e-16	47.24	hypothetical protein MTR_5g097300 [Medicago truncatula]	[more]
gi\|590712129\|ref\|XP_007049302.1\|	4.3e-14	43.94	Uncharacterized protein TCM_002329 [Theobroma cacao]	[more]
gi\|388499126\|gb\|AFK37629.1\|	4.7e-13	45.93	unknown [Lotus japonicus]	[more]
gi\|502099857\|ref\|XP_004491576.1\|	1.4e-12	44.53	PREDICTED: uncharacterized protein LOC101505296 [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C024110	MELO3C024110	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C024110T1	MELO3C024110T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C024110T1.cds1	MELO3C024110T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 15..35 scor
None	No IPR available	PANTHER	PTHR34570	FAMILY NOT NAMED	coord: 2..126 score: 1.3
None	No IPR available	PANTHER	PTHR34570:SF2	SUBFAMILY NOT NAMED	coord: 2..126 score: 1.3