MELO3C018318 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018318
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPHD finger protein ALFIN-LIKE 1
Locationchr10 : 19298819 .. 19298998 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGGAACATGCGCAAGGCAGTCGCAGGCAACGGAAGAGGTAGAGACATACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGTGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAATTGGTTCCATGGGAAGTTTGTTGTATGA

mRNA sequence

ATGCAAGGAACATGCGCAAGGCAGTCGCAGGCAACGGAAGAGGTAGAGACATACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGTGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAATTGGTTCCATGGGAAGTTTGTTGTATGA

Coding sequence (CDS)

ATGCAAGGAACATGCGCAAGGCAGTCGCAGGCAACGGAAGAGGTAGAGACATACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGTGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAATTGGTTCCATGGGAAGTTTGTTGTATGA

Protein sequence

MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV*
Homology
[Close]
BLAST of MELO3C018318 vs. Swiss-Prot
Match: ALFL5_ARATH (PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.1e-15
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 1 

Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           E  E  +EDEDEHG+TLC ACG+NYASDEFWICCD+ E WFHG+ V
Sbjct: 190 EGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMCEKWFHGECV 235

[Close]
BLAST of MELO3C018318 vs. Swiss-Prot
Match: ALFL1_ARATH (PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana GN=AL1 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.0e-15
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1 

Query: 8   QSQATEEV--ETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           Q+++T ++  E+YE+++DEHGDTLC +CG NY +DEFWICCD+ E W+HGK V
Sbjct: 164 QTKSTPKLMEESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

[Close]
BLAST of MELO3C018318 vs. Swiss-Prot
Match: ALFL4_ARATH (PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana GN=AL4 PE=1 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 4.5e-14
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 1 

Query: 7   RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           +  +  EE    EEDEDE G+T C ACGE+YA+DEFWICCD+ E WFHGK V
Sbjct: 179 KDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCV 230

[Close]
BLAST of MELO3C018318 vs. Swiss-Prot
Match: ALFL3_ARATH (PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-13
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 2   QGTCARQSQATEEVETY-EEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           +G  ++  Q  EE E   E+DED+HG+TLC ACG++  +DEFWICCD+ E WFHGK V
Sbjct: 168 EGKSSKTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCV 225

[Close]
BLAST of MELO3C018318 vs. Swiss-Prot
Match: ALFL2_ARATH (PHD finger protein ALFIN-LIKE 2 OS=Arabidopsis thaliana GN=AL2 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.9e-13
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1 

Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           EE    EE+EDEHGDTLC +CG +Y ++EFWICCD+ E W+HGK V
Sbjct: 176 EESYEEEEEEDEHGDTLCGSCGGHYTNEEFWICCDVCERWYHGKCV 221

[Close]
BLAST of MELO3C018318 vs. TrEMBL
Match: A0A0A0K9L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G450620 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.6e-21
Identity = 51/59 (86.44%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 1   MQGTCARQSQATEEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           MQG  ARQSQA EEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 168 MQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 226

[Close]
BLAST of MELO3C018318 vs. TrEMBL
Match: A0A022QH79_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a011207mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-15
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 1 

Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           EE E  EE+EDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 219 EEEEEEEEEEDEHGDTLCGACGENYASDEFWICCDICERWFHGKCV 264

[Close]
BLAST of MELO3C018318 vs. TrEMBL
Match: A0A103XNH6_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_003944 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-15
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 1 

Query: 6   ARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           A+     E+ E  +EDEDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 178 AKMQGKEEDDEMEDEDEDEHGDTLCGACGENYASDEFWICCDICERWFHGKCV 230

[Close]
BLAST of MELO3C018318 vs. TrEMBL
Match: A5AQG6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021402 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-15
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1 

Query: 2   QGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           QG  ++  Q  E+    EE+EDEHG+TLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 158 QGKYSKTPQKDEDEGLEEEEEDEHGETLCGACGENYASDEFWICCDICEKWFHGKCV 214

[Close]
BLAST of MELO3C018318 vs. TrEMBL
Match: D7TZV3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g01600 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-15
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1 

Query: 2   QGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           QG  ++  Q  E+    EE+EDEHG+TLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 180 QGKYSKTPQKDEDEGLEEEEEDEHGETLCGACGENYASDEFWICCDICEKWFHGKCV 236

[Close]
BLAST of MELO3C018318 vs. TAIR10
Match: AT5G20510.1 (AT5G20510.1 alfin-like 5)

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-16
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 1 

Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           E  E  +EDEDEHG+TLC ACG+NYASDEFWICCD+ E WFHG+ V
Sbjct: 190 EGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMCEKWFHGECV 235

[Close]
BLAST of MELO3C018318 vs. TAIR10
Match: AT5G05610.1 (AT5G05610.1 alfin-like 1)

HSP 1 Score: 80.5 bits (197), Expect = 3.9e-16
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1 

Query: 8   QSQATEEV--ETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           Q+++T ++  E+YE+++DEHGDTLC +CG NY +DEFWICCD+ E W+HGK V
Sbjct: 164 QTKSTPKLMEESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

[Close]
BLAST of MELO3C018318 vs. TAIR10
Match: AT5G26210.1 (AT5G26210.1 alfin-like 4)

HSP 1 Score: 77.8 bits (190), Expect = 2.5e-15
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 1 

Query: 7   RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           +  +  EE    EEDEDE G+T C ACGE+YA+DEFWICCD+ E WFHGK V
Sbjct: 179 KDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCV 230

[Close]
BLAST of MELO3C018318 vs. TAIR10
Match: AT3G42790.1 (AT3G42790.1 alfin-like 3)

HSP 1 Score: 76.3 bits (186), Expect = 7.4e-15
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 2   QGTCARQSQATEEVETY-EEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           +G  ++  Q  EE E   E+DED+HG+TLC ACG++  +DEFWICCD+ E WFHGK V
Sbjct: 168 EGKSSKTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCV 225

[Close]
BLAST of MELO3C018318 vs. TAIR10
Match: AT3G11200.1 (AT3G11200.1 alfin-like 2)

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-14
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1 

Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           EE    EE+EDEHGDTLC +CG +Y ++EFWICCD+ E W+HGK V
Sbjct: 176 EESYEEEEEEDEHGDTLCGSCGGHYTNEEFWICCDVCERWYHGKCV 221

[Close]
BLAST of MELO3C018318 vs. NCBI nr
Match: gi|449447876|ref|XP_004141692.1| (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-21
Identity = 51/59 (86.44%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 1   MQGTCARQSQATEEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           MQG  ARQSQA EEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 168 MQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 226

[Close]
BLAST of MELO3C018318 vs. NCBI nr
Match: gi|659124754|ref|XP_008462330.1| (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 8.5e-21
Identity = 50/58 (86.21%), Postives = 50/58 (86.21%), Query Frame = 1 

Query: 2   QGTCARQSQATEEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           QG  ARQSQA EEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 172 QGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 229

[Close]
BLAST of MELO3C018318 vs. NCBI nr
Match: gi|659124756|ref|XP_008462331.1| (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 8.5e-21
Identity = 50/58 (86.21%), Postives = 50/58 (86.21%), Query Frame = 1 

Query: 2   QGTCARQSQATEEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           QG  ARQSQA EEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 169 QGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 226

[Close]
BLAST of MELO3C018318 vs. NCBI nr
Match: gi|659089469|ref|XP_008445525.1| (PREDICTED: PHD finger protein ALFIN-LIKE 4 [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-15
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 1 

Query: 1   MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           ++ T A QS+  EE    EEDE+EHG+TLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 171 IKNTKAVQSKDEEEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCV 228

[Close]
BLAST of MELO3C018318 vs. NCBI nr
Match: gi|604311891|gb|EYU25885.1| (hypothetical protein MIMGU_mgv1a011207mg [Erythranthe guttata])

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-15
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 1 

Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           EE E  EE+EDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 219 EEEEEEEEEEDEHGDTLCGACGENYASDEFWICCDICERWFHGKCV 264

The following BLAST results are available for this feature:
BLAST of MELO3C018318 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ALFL5_ARATH3.1e-1571.74PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1[more]
ALFL1_ARATH7.0e-1558.49PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana GN=AL1 PE=1 SV=1[more]
ALFL4_ARATH4.5e-1461.54PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana GN=AL4 PE=1 SV=2[more]
ALFL3_ARATH1.3e-1355.17PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=1 SV=1[more]
ALFL2_ARATH2.9e-1363.04PHD finger protein ALFIN-LIKE 2 OS=Arabidopsis thaliana GN=AL2 PE=1 SV=1[more]
BLAST of MELO3C018318 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9L1_CUCSA1.6e-2186.44Uncharacterized protein OS=Cucumis sativus GN=Csa_7G450620 PE=4 SV=1[more]
A0A022QH79_ERYGU1.7e-1582.61Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a011207mg PE=4 SV=1[more]
A0A103XNH6_CYNCS2.2e-1571.70Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_003944 PE=4 ... [more]
A5AQG6_VITVI2.8e-1566.67Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021402 PE=4 SV=1[more]
D7TZV3_VITVI2.8e-1566.67Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g01600 PE=4 SV=... [more]
BLAST of MELO3C018318 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G20510.11.8e-1671.74 alfin-like 5[more]
AT5G05610.13.9e-1658.49 alfin-like 1[more]
AT5G26210.12.5e-1561.54 alfin-like 4[more]
AT3G42790.17.4e-1555.17 alfin-like 3[more]
AT3G11200.11.6e-1463.04 alfin-like 2[more]
BLAST of MELO3C018318 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449447876|ref|XP_004141692.1|2.2e-2186.44PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis sativus][more]
gi|659124754|ref|XP_008462330.1|8.5e-2186.21PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo][more]
gi|659124756|ref|XP_008462331.1|8.5e-2186.21PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo][more]
gi|659089469|ref|XP_008445525.1|1.8e-1568.97PREDICTED: PHD finger protein ALFIN-LIKE 4 [Cucumis melo][more]
gi|604311891|gb|EYU25885.1|2.4e-1582.61hypothetical protein MIMGU_mgv1a011207mg [Erythranthe guttata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR013083Znf_RING/FYVE/PHD
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0042393 histone binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018318T1MELO3C018318T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011011Zinc finger, FYVE/PHD-typeunknownSSF57903FYVE/PHD zinc fingercoord: 18..56
score: 3.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 22..58
score: 2.
NoneNo IPR availablePANTHERPTHR12321CPG BINDING PROTEINcoord: 6..58
score: 6.1
NoneNo IPR availablePANTHERPTHR12321:SF61PHD FINGER PROTEIN ALFIN-LIKE 5coord: 6..58
score: 6.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018318Wax gourdmewgoB085
MELO3C018318Cucumber (Gy14) v1cgymeB395
MELO3C018318Cucurbita maxima (Rimu)cmameB659
MELO3C018318Cucurbita maxima (Rimu)cmameB660
MELO3C018318Cucurbita moschata (Rifu)cmomeB651
MELO3C018318Cucurbita moschata (Rifu)cmomeB653
MELO3C018318Wild cucumber (PI 183967)cpimeB265
MELO3C018318Cucumber (Chinese Long) v2cumeB266
MELO3C018318Watermelon (Charleston Gray)mewcgB068
MELO3C018318Watermelon (97103) v1mewmB059
MELO3C018318Watermelon (97103) v1mewmB060
MELO3C018318Cucurbita pepo (Zucchini)cpemeB383
MELO3C018318Cucurbita pepo (Zucchini)cpemeB384
MELO3C018318Bottle gourd (USVL1VR-Ls)lsimeB284
MELO3C018318Cucumber (Gy14) v2cgybmeB314
MELO3C018318Silver-seed gourdcarmeB0183
MELO3C018318Silver-seed gourdcarmeB0662
MELO3C018318Cucumber (Chinese Long) v3cucmeB374
MELO3C018318Watermelon (97103) v2mewmbB067