MELO3C018318T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018318T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	PHD finger protein ALFIN-LIKE 1
Location	chr10 : 19298819 .. 19298998 (+)
Sequence length	180

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGGAACATGCGCAAGGCAGTCGCAGGCAACGGAAGAGGTAGAGACATACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGTGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAATTGGTTCCATGGGAAGTTTGTTGTATGA

mRNA sequence

ATGCAAGGAACATGCGCAAGGCAGTCGCAGGCAACGGAAGAGGTAGAGACATACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGTGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAATTGGTTCCATGGGAAGTTTGTTGTATGA

Coding sequence (CDS)

ATGCAAGGAACATGCGCAAGGCAGTCGCAGGCAACGGAAGAGGTAGAGACATACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGTGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAATTGGTTCCATGGGAAGTTTGTTGTATGA

Protein sequence

MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV*

Homology

[Close]

BLAST of MELO3C018318T1 vs. Swiss-Prot
Match: ALFL5_ARATH (PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.1e-15
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           E  E  +EDEDEHG+TLC ACG+NYASDEFWICCD+ E WFHG+ V
Sbjct: 190 EGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMCEKWFHGECV 235

[Close]

BLAST of MELO3C018318T1 vs. Swiss-Prot
Match: ALFL1_ARATH (PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana GN=AL1 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.0e-15
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 8   QSQATEEV--ETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           Q+++T ++  E+YE+++DEHGDTLC +CG NY +DEFWICCD+ E W+HGK V
Sbjct: 164 QTKSTPKLMEESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

[Close]

BLAST of MELO3C018318T1 vs. Swiss-Prot
Match: ALFL4_ARATH (PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana GN=AL4 PE=1 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 4.5e-14
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 1


Query: 7   RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           +  +  EE    EEDEDE G+T C ACGE+YA+DEFWICCD+ E WFHGK V
Sbjct: 179 KDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCV 230

[Close]

BLAST of MELO3C018318T1 vs. Swiss-Prot
Match: ALFL3_ARATH (PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-13
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 2   QGTCARQSQATEEVETY-EEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           +G  ++  Q  EE E   E+DED+HG+TLC ACG++  +DEFWICCD+ E WFHGK V
Sbjct: 168 EGKSSKTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCV 225

[Close]

BLAST of MELO3C018318T1 vs. Swiss-Prot
Match: ALFL2_ARATH (PHD finger protein ALFIN-LIKE 2 OS=Arabidopsis thaliana GN=AL2 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.9e-13
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1


Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           EE    EE+EDEHGDTLC +CG +Y ++EFWICCD+ E W+HGK V
Sbjct: 176 EESYEEEEEEDEHGDTLCGSCGGHYTNEEFWICCDVCERWYHGKCV 221

[Close]

BLAST of MELO3C018318T1 vs. TrEMBL
Match: A0A0A0K9L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G450620 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.6e-21
Identity = 51/59 (86.44%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 1   MQGTCARQSQATEEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           MQG  ARQSQA EEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 168 MQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 226

[Close]

BLAST of MELO3C018318T1 vs. TrEMBL
Match: A0A022QH79_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a011207mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-15
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 1


Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           EE E  EE+EDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 219 EEEEEEEEEEDEHGDTLCGACGENYASDEFWICCDICERWFHGKCV 264

[Close]

BLAST of MELO3C018318T1 vs. TrEMBL
Match: A0A103XNH6_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_003944 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-15
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 1


Query: 6   ARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           A+     E+ E  +EDEDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 178 AKMQGKEEDDEMEDEDEDEHGDTLCGACGENYASDEFWICCDICERWFHGKCV 230

[Close]

BLAST of MELO3C018318T1 vs. TrEMBL
Match: A5AQG6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021402 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-15
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1


Query: 2   QGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           QG  ++  Q  E+    EE+EDEHG+TLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 158 QGKYSKTPQKDEDEGLEEEEEDEHGETLCGACGENYASDEFWICCDICEKWFHGKCV 214

[Close]

BLAST of MELO3C018318T1 vs. TrEMBL
Match: D7TZV3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g01600 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-15
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1


Query: 2   QGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           QG  ++  Q  E+    EE+EDEHG+TLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 180 QGKYSKTPQKDEDEGLEEEEEDEHGETLCGACGENYASDEFWICCDICEKWFHGKCV 236

[Close]

BLAST of MELO3C018318T1 vs. TAIR10
Match: AT5G20510.1 (AT5G20510.1 alfin-like 5)

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-16
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           E  E  +EDEDEHG+TLC ACG+NYASDEFWICCD+ E WFHG+ V
Sbjct: 190 EGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMCEKWFHGECV 235

[Close]

BLAST of MELO3C018318T1 vs. TAIR10
Match: AT5G05610.1 (AT5G05610.1 alfin-like 1)

HSP 1 Score: 80.5 bits (197), Expect = 3.9e-16
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 8   QSQATEEV--ETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           Q+++T ++  E+YE+++DEHGDTLC +CG NY +DEFWICCD+ E W+HGK V
Sbjct: 164 QTKSTPKLMEESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

[Close]

BLAST of MELO3C018318T1 vs. TAIR10
Match: AT5G26210.1 (AT5G26210.1 alfin-like 4)

HSP 1 Score: 77.8 bits (190), Expect = 2.5e-15
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 1


Query: 7   RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           +  +  EE    EEDEDE G+T C ACGE+YA+DEFWICCD+ E WFHGK V
Sbjct: 179 KDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCV 230

[Close]

BLAST of MELO3C018318T1 vs. TAIR10
Match: AT3G42790.1 (AT3G42790.1 alfin-like 3)

HSP 1 Score: 76.3 bits (186), Expect = 7.4e-15
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 2   QGTCARQSQATEEVETY-EEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           +G  ++  Q  EE E   E+DED+HG+TLC ACG++  +DEFWICCD+ E WFHGK V
Sbjct: 168 EGKSSKTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCV 225

[Close]

BLAST of MELO3C018318T1 vs. TAIR10
Match: AT3G11200.1 (AT3G11200.1 alfin-like 2)

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-14
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1


Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           EE    EE+EDEHGDTLC +CG +Y ++EFWICCD+ E W+HGK V
Sbjct: 176 EESYEEEEEEDEHGDTLCGSCGGHYTNEEFWICCDVCERWYHGKCV 221

[Close]

BLAST of MELO3C018318T1 vs. NCBI nr
Match: gi|449447876|ref|XP_004141692.1| (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-21
Identity = 51/59 (86.44%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 1   MQGTCARQSQATEEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           MQG  ARQSQA EEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 168 MQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 226

[Close]

BLAST of MELO3C018318T1 vs. NCBI nr
Match: gi|659124754|ref|XP_008462330.1| (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 8.5e-21
Identity = 50/58 (86.21%), Postives = 50/58 (86.21%), Query Frame = 1


Query: 2   QGTCARQSQATEEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           QG  ARQSQA EEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 172 QGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 229

[Close]

BLAST of MELO3C018318T1 vs. NCBI nr
Match: gi|659124756|ref|XP_008462331.1| (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 8.5e-21
Identity = 50/58 (86.21%), Postives = 50/58 (86.21%), Query Frame = 1


Query: 2   QGTCARQSQATEEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           QG  ARQSQA EEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 169 QGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 226

[Close]

BLAST of MELO3C018318T1 vs. NCBI nr
Match: gi|659089469|ref|XP_008445525.1| (PREDICTED: PHD finger protein ALFIN-LIKE 4 [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-15
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 1


Query: 1   MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           ++ T A QS+  EE    EEDE+EHG+TLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 171 IKNTKAVQSKDEEEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCV 228

[Close]

BLAST of MELO3C018318T1 vs. NCBI nr
Match: gi|604311891|gb|EYU25885.1| (hypothetical protein MIMGU_mgv1a011207mg [Erythranthe guttata])

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-15
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 1


Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           EE E  EE+EDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 219 EEEEEEEEEEDEHGDTLCGACGENYASDEFWICCDICERWFHGKCV 264

The following BLAST results are available for this feature:

BLAST of MELO3C018318T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ALFL5_ARATH	3.1e-15	71.74	PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1	[more]
ALFL1_ARATH	7.0e-15	58.49	PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana GN=AL1 PE=1 SV=1	[more]
ALFL4_ARATH	4.5e-14	61.54	PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana GN=AL4 PE=1 SV=2	[more]
ALFL3_ARATH	1.3e-13	55.17	PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=1 SV=1	[more]
ALFL2_ARATH	2.9e-13	63.04	PHD finger protein ALFIN-LIKE 2 OS=Arabidopsis thaliana GN=AL2 PE=1 SV=1	[more]

BLAST of MELO3C018318T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9L1_CUCSA	1.6e-21	86.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G450620 PE=4 SV=1	[more]
A0A022QH79_ERYGU	1.7e-15	82.61	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a011207mg PE=4 SV=1	[more]
A0A103XNH6_CYNCS	2.2e-15	71.70	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_003944 PE=4 ...	[more]
A5AQG6_VITVI	2.8e-15	66.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021402 PE=4 SV=1	[more]
D7TZV3_VITVI	2.8e-15	66.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g01600 PE=4 SV=...	[more]

BLAST of MELO3C018318T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20510.1	1.8e-16	71.74	alfin-like 5	[more]
AT5G05610.1	3.9e-16	58.49	alfin-like 1	[more]
AT5G26210.1	2.5e-15	61.54	alfin-like 4	[more]
AT3G42790.1	7.4e-15	55.17	alfin-like 3	[more]
AT3G11200.1	1.6e-14	63.04	alfin-like 2	[more]

BLAST of MELO3C018318T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447876\|ref\|XP_004141692.1\|	2.2e-21	86.44	PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis sativus]	[more]
gi\|659124754\|ref\|XP_008462330.1\|	8.5e-21	86.21	PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo]	[more]
gi\|659124756\|ref\|XP_008462331.1\|	8.5e-21	86.21	PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo]	[more]
gi\|659089469\|ref\|XP_008445525.1\|	1.8e-15	68.97	PREDICTED: PHD finger protein ALFIN-LIKE 4 [Cucumis melo]	[more]
gi\|604311891\|gb\|EYU25885.1\|	2.4e-15	82.61	hypothetical protein MIMGU_mgv1a011207mg [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011011	Znf_FYVE_PHD
IPR013083	Znf_RING/FYVE/PHD

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0042393	histone binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C018318	MELO3C018318	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C018318T1	MELO3C018318T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018318T1.cds1	MELO3C018318T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011011	Zinc finger, FYVE/PHD-type	unknown	SSF57903	FYVE/PHD zinc finger	coord: 18..56 score: 3.3
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 22..58 score: 2.
None	No IPR available	PANTHER	PTHR12321	CPG BINDING PROTEIN	coord: 6..58 score: 6.1
None	No IPR available	PANTHER	PTHR12321:SF61	PHD FINGER PROTEIN ALFIN-LIKE 5	coord: 6..58 score: 6.1