MELO3C018318 (gene) Melon (DHL92) v3.5.1

NameMELO3C018318
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPHD finger protein ALFIN-LIKE 1
Locationchr10 : 19298819 .. 19298998 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGGAACATGCGCAAGGCAGTCGCAGGCAACGGAAGAGGTAGAGACATACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGTGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAATTGGTTCCATGGGAAGTTTGTTGTATGA

mRNA sequence

ATGCAAGGAACATGCGCAAGGCAGTCGCAGGCAACGGAAGAGGTAGAGACATACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGTGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAATTGGTTCCATGGGAAGTTTGTTGTATGA

Coding sequence (CDS)

ATGCAAGGAACATGCGCAAGGCAGTCGCAGGCAACGGAAGAGGTAGAGACATACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTAGGGCATGTGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAATTGGTTCCATGGGAAGTTTGTTGTATGA

Protein sequence

MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFVV*
BLAST of MELO3C018318 vs. Swiss-Prot
Match: ALFL5_ARATH (PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.1e-15
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 1

Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           E  E  +EDEDEHG+TLC ACG+NYASDEFWICCD+ E WFHG+ V
Sbjct: 190 EGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMCEKWFHGECV 235

BLAST of MELO3C018318 vs. Swiss-Prot
Match: ALFL1_ARATH (PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana GN=AL1 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.0e-15
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1

Query: 8   QSQATEEV--ETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           Q+++T ++  E+YE+++DEHGDTLC +CG NY +DEFWICCD+ E W+HGK V
Sbjct: 164 QTKSTPKLMEESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

BLAST of MELO3C018318 vs. Swiss-Prot
Match: ALFL4_ARATH (PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana GN=AL4 PE=1 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 4.5e-14
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 1

Query: 7   RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           +  +  EE    EEDEDE G+T C ACGE+YA+DEFWICCD+ E WFHGK V
Sbjct: 179 KDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCV 230

BLAST of MELO3C018318 vs. Swiss-Prot
Match: ALFL3_ARATH (PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-13
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1

Query: 2   QGTCARQSQATEEVETY-EEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           +G  ++  Q  EE E   E+DED+HG+TLC ACG++  +DEFWICCD+ E WFHGK V
Sbjct: 168 EGKSSKTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCV 225

BLAST of MELO3C018318 vs. Swiss-Prot
Match: ALFL2_ARATH (PHD finger protein ALFIN-LIKE 2 OS=Arabidopsis thaliana GN=AL2 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.9e-13
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1

Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           EE    EE+EDEHGDTLC +CG +Y ++EFWICCD+ E W+HGK V
Sbjct: 176 EESYEEEEEEDEHGDTLCGSCGGHYTNEEFWICCDVCERWYHGKCV 221

BLAST of MELO3C018318 vs. TrEMBL
Match: A0A0A0K9L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G450620 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.6e-21
Identity = 51/59 (86.44%), Postives = 51/59 (86.44%), Query Frame = 1

Query: 1   MQGTCARQSQATEEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           MQG  ARQSQA EEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 168 MQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 226

BLAST of MELO3C018318 vs. TrEMBL
Match: A0A022QH79_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a011207mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-15
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 1

Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           EE E  EE+EDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 219 EEEEEEEEEEDEHGDTLCGACGENYASDEFWICCDICERWFHGKCV 264

BLAST of MELO3C018318 vs. TrEMBL
Match: A0A103XNH6_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_003944 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-15
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 1

Query: 6   ARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           A+     E+ E  +EDEDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 178 AKMQGKEEDDEMEDEDEDEHGDTLCGACGENYASDEFWICCDICERWFHGKCV 230

BLAST of MELO3C018318 vs. TrEMBL
Match: A5AQG6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021402 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-15
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1

Query: 2   QGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           QG  ++  Q  E+    EE+EDEHG+TLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 158 QGKYSKTPQKDEDEGLEEEEEDEHGETLCGACGENYASDEFWICCDICEKWFHGKCV 214

BLAST of MELO3C018318 vs. TrEMBL
Match: D7TZV3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g01600 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-15
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1

Query: 2   QGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           QG  ++  Q  E+    EE+EDEHG+TLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 180 QGKYSKTPQKDEDEGLEEEEEDEHGETLCGACGENYASDEFWICCDICEKWFHGKCV 236

BLAST of MELO3C018318 vs. TAIR10
Match: AT5G20510.1 (AT5G20510.1 alfin-like 5)

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-16
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 1

Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           E  E  +EDEDEHG+TLC ACG+NYASDEFWICCD+ E WFHG+ V
Sbjct: 190 EGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMCEKWFHGECV 235

BLAST of MELO3C018318 vs. TAIR10
Match: AT5G05610.1 (AT5G05610.1 alfin-like 1)

HSP 1 Score: 80.5 bits (197), Expect = 3.9e-16
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1

Query: 8   QSQATEEV--ETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           Q+++T ++  E+YE+++DEHGDTLC +CG NY +DEFWICCD+ E W+HGK V
Sbjct: 164 QTKSTPKLMEESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

BLAST of MELO3C018318 vs. TAIR10
Match: AT5G26210.1 (AT5G26210.1 alfin-like 4)

HSP 1 Score: 77.8 bits (190), Expect = 2.5e-15
Identity = 32/52 (61.54%), Postives = 36/52 (69.23%), Query Frame = 1

Query: 7   RQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           +  +  EE    EEDEDE G+T C ACGE+YA+DEFWICCD+ E WFHGK V
Sbjct: 179 KDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCV 230

BLAST of MELO3C018318 vs. TAIR10
Match: AT3G42790.1 (AT3G42790.1 alfin-like 3)

HSP 1 Score: 76.3 bits (186), Expect = 7.4e-15
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1

Query: 2   QGTCARQSQATEEVETY-EEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           +G  ++  Q  EE E   E+DED+HG+TLC ACG++  +DEFWICCD+ E WFHGK V
Sbjct: 168 EGKSSKTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCV 225

BLAST of MELO3C018318 vs. TAIR10
Match: AT3G11200.1 (AT3G11200.1 alfin-like 2)

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-14
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1

Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           EE    EE+EDEHGDTLC +CG +Y ++EFWICCD+ E W+HGK V
Sbjct: 176 EESYEEEEEEDEHGDTLCGSCGGHYTNEEFWICCDVCERWYHGKCV 221

BLAST of MELO3C018318 vs. NCBI nr
Match: gi|449447876|ref|XP_004141692.1| (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-21
Identity = 51/59 (86.44%), Postives = 51/59 (86.44%), Query Frame = 1

Query: 1   MQGTCARQSQATEEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           MQG  ARQSQA EEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 168 MQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 226

BLAST of MELO3C018318 vs. NCBI nr
Match: gi|659124754|ref|XP_008462330.1| (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 8.5e-21
Identity = 50/58 (86.21%), Postives = 50/58 (86.21%), Query Frame = 1

Query: 2   QGTCARQSQATEEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           QG  ARQSQA EEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 172 QGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 229

BLAST of MELO3C018318 vs. NCBI nr
Match: gi|659124756|ref|XP_008462331.1| (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 8.5e-21
Identity = 50/58 (86.21%), Postives = 50/58 (86.21%), Query Frame = 1

Query: 2   QGTCARQSQATEEVET-YEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           QG  ARQSQA EEVET YEEDEDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 169 QGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCV 226

BLAST of MELO3C018318 vs. NCBI nr
Match: gi|659089469|ref|XP_008445525.1| (PREDICTED: PHD finger protein ALFIN-LIKE 4 [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-15
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 1

Query: 1   MQGTCARQSQATEEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           ++ T A QS+  EE    EEDE+EHG+TLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 171 IKNTKAVQSKDEEEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCV 228

BLAST of MELO3C018318 vs. NCBI nr
Match: gi|604311891|gb|EYU25885.1| (hypothetical protein MIMGU_mgv1a011207mg [Erythranthe guttata])

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-15
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 1

Query: 13  EEVETYEEDEDEHGDTLCRACGENYASDEFWICCDIYENWFHGKFV 59
           EE E  EE+EDEHGDTLC ACGENYASDEFWICCDI E WFHGK V
Sbjct: 219 EEEEEEEEEEDEHGDTLCGACGENYASDEFWICCDICERWFHGKCV 264

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ALFL5_ARATH3.1e-1571.74PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1[more]
ALFL1_ARATH7.0e-1558.49PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana GN=AL1 PE=1 SV=1[more]
ALFL4_ARATH4.5e-1461.54PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana GN=AL4 PE=1 SV=2[more]
ALFL3_ARATH1.3e-1355.17PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=1 SV=1[more]
ALFL2_ARATH2.9e-1363.04PHD finger protein ALFIN-LIKE 2 OS=Arabidopsis thaliana GN=AL2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K9L1_CUCSA1.6e-2186.44Uncharacterized protein OS=Cucumis sativus GN=Csa_7G450620 PE=4 SV=1[more]
A0A022QH79_ERYGU1.7e-1582.61Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a011207mg PE=4 SV=1[more]
A0A103XNH6_CYNCS2.2e-1571.70Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_003944 PE=4 ... [more]
A5AQG6_VITVI2.8e-1566.67Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021402 PE=4 SV=1[more]
D7TZV3_VITVI2.8e-1566.67Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g01600 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT5G20510.11.8e-1671.74 alfin-like 5[more]
AT5G05610.13.9e-1658.49 alfin-like 1[more]
AT5G26210.12.5e-1561.54 alfin-like 4[more]
AT3G42790.17.4e-1555.17 alfin-like 3[more]
AT3G11200.11.6e-1463.04 alfin-like 2[more]
Match NameE-valueIdentityDescription
gi|449447876|ref|XP_004141692.1|2.2e-2186.44PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis sativus][more]
gi|659124754|ref|XP_008462330.1|8.5e-2186.21PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo][more]
gi|659124756|ref|XP_008462331.1|8.5e-2186.21PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo][more]
gi|659089469|ref|XP_008445525.1|1.8e-1568.97PREDICTED: PHD finger protein ALFIN-LIKE 4 [Cucumis melo][more]
gi|604311891|gb|EYU25885.1|2.4e-1582.61hypothetical protein MIMGU_mgv1a011207mg [Erythranthe guttata][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR013083Znf_RING/FYVE/PHD
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0042393 histone binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018318T1MELO3C018318T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011011Zinc finger, FYVE/PHD-typeunknownSSF57903FYVE/PHD zinc fingercoord: 18..56
score: 3.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 22..58
score: 2.
NoneNo IPR availablePANTHERPTHR12321CPG BINDING PROTEINcoord: 6..58
score: 6.1
NoneNo IPR availablePANTHERPTHR12321:SF61PHD FINGER PROTEIN ALFIN-LIKE 5coord: 6..58
score: 6.1

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None