MELO3C004758 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004758
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr12 : 10816123 .. 10816581 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCCATCAAATTTAAAATTCCAAAGTTCTTCAGAAAAACTGATCCAGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTGTTTGCCATAATTTTATTGATGAGCAGAAGGTTAGATTTTGTGTTTCCAAATTTAAGGATTATGCTCATACTTGGTGGGACAAATTAATGTCAAGAAGAAGAAGGAATCTGGAAGCACCAATTGATTCGTGTTATGAATTCAAAGAATCTACGAGAAAGCGGTTTGTTCCAAATCATTTCCAAAGAGACATGGCACAAAAGCTTCAAGCATTGAGGCAAGGTAGCAAGTTGGTGGAAGACTACTACAAAGAGATGGACACTTTGATGGATCGACTTGATCTTGATGAGGAGATGGAGACTCTCGTAGAACGATTTTTGAATGGCCTCAACAAGGAGATTGCTGACAAGGTTGATTGGCAGCCGTAG

mRNA sequence

ATGGGAGCCATCAAATTTAAAATTCCAAAGTTCTTCAGAAAAACTGATCCAGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTGTTTGCCATAATTTTATTGATGAGCAGAAGGTTAGATTTTGTGTTTCCAAATTTAAGGATTATGCTCATACTTGGTGGGACAAATTAATGTCAAGAAGAAGAAGGAATCTGGAAGCACCAATTGATTCGTGTTATGAATTCAAAGAATCTACGAGAAAGCGGTTTGTTCCAAATCATTTCCAAAGAGACATGGCACAAAAGCTTCAAGCATTGAGGCAAGGTAGCAAGTTGGTGGAAGACTACTACAAAGAGATGGACACTTTGATGGATCGACTTGATCTTGATGAGGAGATGGAGACTCTCGTAGAACGATTTTTGAATGGCCTCAACAAGGAGATTGCTGACAAGGTTGATTGGCAGCCGTAG

Coding sequence (CDS)

ATGGGAGCCATCAAATTTAAAATTCCAAAGTTCTTCAGAAAAACTGATCCAGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTGTTTGCCATAATTTTATTGATGAGCAGAAGGTTAGATTTTGTGTTTCCAAATTTAAGGATTATGCTCATACTTGGTGGGACAAATTAATGTCAAGAAGAAGAAGGAATCTGGAAGCACCAATTGATTCGTGTTATGAATTCAAAGAATCTACGAGAAAGCGGTTTGTTCCAAATCATTTCCAAAGAGACATGGCACAAAAGCTTCAAGCATTGAGGCAAGGTAGCAAGTTGGTGGAAGACTACTACAAAGAGATGGACACTTTGATGGATCGACTTGATCTTGATGAGGAGATGGAGACTCTCGTAGAACGATTTTTGAATGGCCTCAACAAGGAGATTGCTGACAAGGTTGATTGGCAGCCGTAG

Protein sequence

MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKLMSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLMDRLDLDEEMETLVERFLNGLNKEIADKVDWQP*

Homology

[Close]

BLAST of MELO3C004758 vs. TrEMBL
Match: A5BYV1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008811 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-37
Identity = 75/151 (49.67%), Postives = 108/151 (71.52%), Query Frame = 1


Query: 1   MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
           +G IK KIP F  K DPE Y++WEK+VE +F CHN+ +E+KV+    +F DYA  WWD+L
Sbjct: 122 LGNIKMKIPSFQGKNDPEVYLEWEKKVEFIFECHNYSEEKKVKLXXIEFTDYAIIWWDQL 181

Query: 61  MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
           + +RRRN E PI    E K + +KR VP+H+ RD+ QKLQ+L QG + V+DY+K+M+  M
Sbjct: 182 VMKRRRNYERPIXIWEEMKATMKKRXVPSHYYRDLYQKLQSLTQGYRSVDDYHKKMEIAM 241

Query: 121 DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
            R +++E+ E  + RFLNGLN++IA+ V+ Q
Sbjct: 242 IRANVEEDREVTMARFLNGLNRDIANVVELQ 272

[Close]

BLAST of MELO3C004758 vs. TrEMBL
Match: A5BSP7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001042 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.4e-36
Identity = 72/151 (47.68%), Postives = 107/151 (70.86%), Query Frame = 1


Query: 1   MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
           +G IK KIP F  K DP+ Y++WEK+VE +F CHN+ +E+ V+  V +F DYA  WWD+L
Sbjct: 108 LGNIKMKIPLFQGKNDPKVYLEWEKKVEFIFECHNYSEEKNVKLVVIEFTDYAIIWWDQL 167

Query: 61  MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
           +  RRRN E PI++  E K + R+ FVP+H+ RD+ QKL +L  G + ++DY+KEM+  M
Sbjct: 168 VMNRRRNYERPIETWEEMKATMRRWFVPSHYYRDLYQKLXSLTXGYRSMDDYHKEMEIAM 227

Query: 121 DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
            R +++E+ E  + RFLNGLN++IA+ V+ Q
Sbjct: 228 IRANVEEDREATMARFLNGLNQDIANVVELQ 258

[Close]

BLAST of MELO3C004758 vs. TrEMBL
Match: A5AZG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020379 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-35
Identity = 72/144 (50.00%), Postives = 104/144 (72.22%), Query Frame = 1


Query: 8   IPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKLMSRRRRN 67
           IP F  K +PE Y++WEK+VE +F CHN+ +E+KV+  V +F DYA  WWD+L+  RRRN
Sbjct: 68  IPSFQGKNNPEVYLEWEKKVEFIFECHNYSEEKKVKLAVIEFTDYAIIWWDQLVMNRRRN 127

Query: 68  LEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLMDRLDLDE 127
            E PI++  E K + R+ FVP+H+ RD+ QKLQ+L QG + V+DY+KEM+  M R +++E
Sbjct: 128 YERPIETWEEMKATMRRWFVPSHYYRDLYQKLQSLTQGYRSVDDYHKEMEIAMIRANVEE 187

Query: 128 EMETLVERFLNGLNKEIADKVDWQ 152
           + E  + RFLNGLN +IA+ V+ Q
Sbjct: 188 DREATMARFLNGLNWDIANVVELQ 211

[Close]

BLAST of MELO3C004758 vs. TrEMBL
Match: A0A151U9W8_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_020294 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.2e-35
Identity = 73/151 (48.34%), Postives = 104/151 (68.87%), Query Frame = 1


Query: 1   MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
           +G IK  IP F  K DPE Y++WE++VE+VF CHN+ +E+KV+  V +F DY   WWD+ 
Sbjct: 28  LGNIKMTIPTFQGKNDPELYLEWERKVEHVFDCHNYSEEKKVKLAVVEFTDYVSIWWDQF 87

Query: 61  MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
           +  +RRN E  I +  E K   R+RFVP+H+ RD+ +KLQ+L QGS  VEDYYKEM+  M
Sbjct: 88  VINKRRNGERFICTWEEMKVVIRRRFVPSHYHRDLHRKLQSLTQGSMSVEDYYKEMELAM 147

Query: 121 DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
            R++++E+ E  + RF+ GL KE+ D V+ Q
Sbjct: 148 IRVNVEEDYEVTMARFIGGLKKEMVDVVELQ 178

[Close]

BLAST of MELO3C004758 vs. TrEMBL
Match: A5AY05_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009305 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.8e-35
Identity = 72/151 (47.68%), Postives = 108/151 (71.52%), Query Frame = 1


Query: 1   MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
           +G IK KIP F  K DP+ Y++WEK+VE +F CHN+ +E+ V+  V +F DYA  WWD+L
Sbjct: 85  LGNIKMKIPSFQGKNDPKVYLEWEKKVEFIFECHNYSEEKIVKLPVIEFTDYAIIWWDQL 144

Query: 61  MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
           +  RRRN E PI++  E K + R+RFV +H+ RD+ QKL++L QG + V+DY+KEM+  M
Sbjct: 145 VMNRRRNYERPIETWEEMKATMRRRFVLSHYYRDLYQKLKSLTQGYRSVDDYHKEMEIAM 204

Query: 121 DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
            R++++E+ E  + RFLN +N++IA+ V  Q
Sbjct: 205 IRVNVEEDREATMARFLNMMNRDIANVVKLQ 235

[Close]

BLAST of MELO3C004758 vs. NCBI nr
Match: gi|568833665|ref|XP_006470999.1| (PREDICTED: uncharacterized protein LOC102628703, partial [Citrus sinensis])

HSP 1 Score: 172.2 bits (435), Expect = 7.2e-40
Identity = 79/151 (52.32%), Postives = 112/151 (74.17%), Query Frame = 1


Query: 1   MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
           +G+IK KIP F  K DPE Y++WEK+VE VF CHN+ +E+KV+    +F DYA  WWD+L
Sbjct: 99  LGSIKLKIPSFQGKNDPEAYLEWEKKVELVFDCHNYSEEKKVKLAAVEFTDYAIIWWDQL 158

Query: 61  MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
           +  RRRN E PI++  E K   R+RFVP+H+ R++ Q+LQ+L QGS+ VEDY+KEM+ +M
Sbjct: 159 VLSRRRNRERPINTWEEMKAIMRRRFVPSHYYRELHQRLQSLTQGSRSVEDYHKEMEIIM 218

Query: 121 DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
            R +++EE E  + RFL+GLN++IA+ VD Q
Sbjct: 219 IRANIEEEREATMARFLHGLNQDIANVVDLQ 249

[Close]

BLAST of MELO3C004758 vs. NCBI nr
Match: gi|985466622|ref|XP_015389621.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC102627722 [Citrus sinensis])

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-39
Identity = 78/151 (51.66%), Postives = 111/151 (73.51%), Query Frame = 1


Query: 1   MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
           +G+IK KIP F  K DPE Y++WEK+VE VF CHN+  E+KV+    +F DYA  WWD+L
Sbjct: 99  LGSIKLKIPSFQGKNDPEAYLEWEKKVELVFDCHNYFKEKKVKLAAVEFTDYAIIWWDQL 158

Query: 61  MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
           +  RRRN E PI++  E K   R+RFVP+H+ R++ Q+LQ+L QGS+ VEDY+KEM+ +M
Sbjct: 159 VLSRRRNRERPINTWEEMKAIMRRRFVPSHYYRELHQRLQSLTQGSRSVEDYHKEMEIIM 218

Query: 121 DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
            R +++EE E  + RFL+GLN++IA+ +D Q
Sbjct: 219 IRANIEEEREATMARFLHGLNQDIANVIDLQ 249

[Close]

BLAST of MELO3C004758 vs. NCBI nr
Match: gi|985456365|ref|XP_015387373.1| (PREDICTED: uncharacterized protein LOC102617792 [Citrus sinensis])

HSP 1 Score: 169.5 bits (428), Expect = 4.6e-39
Identity = 80/151 (52.98%), Postives = 113/151 (74.83%), Query Frame = 1


Query: 1   MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
           +G+IK KIP F  K DPE Y++WEK+VE VF CHN+ +E+KV+    +F DYA  WWD+L
Sbjct: 99  LGSIKLKIPSFQGKHDPEAYLEWEKKVELVFDCHNYSEEKKVKLVAVEFTDYAIIWWDQL 158

Query: 61  MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
           +  RRRN E PI++  E K   R+RFVP+H+ R++ Q+LQ+L QGS+ VEDY+KEM+ +M
Sbjct: 159 VLSRRRNRERPINTWEEMKAIMRRRFVPSHYYRELHQRLQSLTQGSRSVEDYHKEMEIIM 218

Query: 121 DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
            R +++EE ET+  RFL+GLN++IA+ VD Q
Sbjct: 219 IRANIEEERETMA-RFLHGLNQDIANVVDLQ 248

[Close]

BLAST of MELO3C004758 vs. NCBI nr
Match: gi|923733656|ref|XP_013668961.1| (PREDICTED: uncharacterized protein LOC106373318 [Brassica napus])

HSP 1 Score: 164.1 bits (414), Expect = 1.9e-37
Identity = 74/151 (49.01%), Postives = 108/151 (71.52%), Query Frame = 1


Query: 1    MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
            +G +K +IP F  K DP+ Y++WEK++E VF C  F +E+KVR   ++F  YA +WWD++
Sbjct: 1843 LGNLKLRIPPFHGKNDPDAYLEWEKKIELVFNCQQFTEERKVRLAATEFCGYAISWWDQI 1902

Query: 61   MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
             + RRRN E  + S +E K   +KRFVPNH+ RD+ QKL+ L QGSK VEDY++EM+TLM
Sbjct: 1903 ATTRRRNGEPQVASWFEMKTVMKKRFVPNHYGRDLHQKLRRLSQGSKSVEDYHQEMETLM 1962

Query: 121  DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
             + DL+EE+E  + RF  GLN++I D+++ Q
Sbjct: 1963 LKADLEEEVEATMARFQGGLNRDIQDRLELQ 1993

[Close]


Query: 1    MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
            +G +K +IP F  K DP+ Y++WEK++E VF C  F +E+KVR   ++F  YA +WWD++
Sbjct: 3269 LGNLKLRIPPFHGKNDPDAYLEWEKKIELVFNCQQFTEERKVRLAATEFCGYAISWWDQI 3328

Query: 61   MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
             + RRRN E  + S +E K   +KRFVPNH+ RD+ QKL+ L QGSK VEDY++EM+TLM
Sbjct: 3329 ATTRRRNGEPQVASWFEMKTVMKKRFVPNHYGRDLHQKLRRLSQGSKSVEDYHQEMETLM 3388

Query: 121  DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
             + DL+EE+E  + RF  GLN++I D+++ Q
Sbjct: 3389 LKADLEEEVEATMARFQGGLNRDIQDRLELQ 3419

HSP 2 Score: 164.1 bits (414), Expect = 1.9e-37
Identity = 75/151 (49.67%), Postives = 108/151 (71.52%), Query Frame = 1


Query: 1   MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
           +G IK KIP F  K DPE Y++WEK+VE +F CHN+ +E+KV+    +F DYA  WWD+L
Sbjct: 122 LGNIKMKIPSFQGKNDPEVYLEWEKKVEFIFECHNYSEEKKVKLXXIEFTDYAIIWWDQL 181

Query: 61  MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
           + +RRRN E PI    E K + +KR VP+H+ RD+ QKLQ+L QG + V+DY+K+M+  M
Sbjct: 182 VMKRRRNYERPIXIWEEMKATMKKRXVPSHYYRDLYQKLQSLTQGYRSVDDYHKKMEIAM 241

Query: 121 DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
            R +++E+ E  + RFLNGLN++IA+ V+ Q
Sbjct: 242 IRANVEEDREVTMARFLNGLNRDIANVVELQ 272

The following BLAST results are available for this feature:

BLAST of MELO3C004758 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BYV1_VITVI	1.4e-37	49.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008811 PE=4 SV=1	[more]
A5BSP7_VITVI	7.4e-36	47.68	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001042 PE=4 SV=1	[more]
A5AZG1_VITVI	1.3e-35	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020379 PE=4 SV=1	[more]
A0A151U9W8_CAJCA	2.2e-35	48.34	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_020294 PE=4 SV=1	[more]
A5AY05_VITVI	2.8e-35	47.68	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009305 PE=4 SV=1	[more]

BLAST of MELO3C004758 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|568833665\|ref\|XP_006470999.1\|	7.2e-40	52.32	PREDICTED: uncharacterized protein LOC102628703, partial [Citrus sinensis]	[more]
gi\|985466622\|ref\|XP_015389621.1\|	1.2e-39	51.66	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC102627722 [Citrus sin...	[more]
gi\|985456365\|ref\|XP_015387373.1\|	4.6e-39	52.98	PREDICTED: uncharacterized protein LOC102617792 [Citrus sinensis]	[more]
gi\|923733656\|ref\|XP_013668961.1\|	1.9e-37	49.01	PREDICTED: uncharacterized protein LOC106373318 [Brassica napus]	[more]
gi\|923733656\|ref\|XP_013668961.1\|	1.9e-37	49.01	PREDICTED: uncharacterized protein LOC106373318 [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004758T1	MELO3C004758T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 44..141 score: 1.3
None	No IPR available	PANTHER	PTHR22847	WD40 REPEAT PROTEIN	coord: 1..146 score: 4.2
None	No IPR available	PANTHER	PTHR22847:SF430	MZB10.11 PROTEIN-RELATED	coord: 1..146 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004758	Wax gourd	mewgoB174
MELO3C004758	Cucumber (Gy14) v1	cgymeB365
MELO3C004758	Wild cucumber (PI 183967)	cpimeB011
MELO3C004758	Cucumber (Chinese Long) v2	cumeB015
MELO3C004758	Watermelon (Charleston Gray)	mewcgB141
MELO3C004758	Watermelon (97103) v1	mewmB159
MELO3C004758	Bottle gourd (USVL1VR-Ls)	lsimeB244
MELO3C004758	Cucumber (Gy14) v2	cgybmeB010
MELO3C004758	Cucumber (Chinese Long) v3	cucmeB010
MELO3C004758	Watermelon (97103) v2	mewmbB143