MELO3C004758T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004758T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr12 : 10816123 .. 10816581 (+)
Sequence length	459

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCCATCAAATTTAAAATTCCAAAGTTCTTCAGAAAAACTGATCCAGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTGTTTGCCATAATTTTATTGATGAGCAGAAGGTTAGATTTTGTGTTTCCAAATTTAAGGATTATGCTCATACTTGGTGGGACAAATTAATGTCAAGAAGAAGAAGGAATCTGGAAGCACCAATTGATTCGTGTTATGAATTCAAAGAATCTACGAGAAAGCGGTTTGTTCCAAATCATTTCCAAAGAGACATGGCACAAAAGCTTCAAGCATTGAGGCAAGGTAGCAAGTTGGTGGAAGACTACTACAAAGAGATGGACACTTTGATGGATCGACTTGATCTTGATGAGGAGATGGAGACTCTCGTAGAACGATTTTTGAATGGCCTCAACAAGGAGATTGCTGACAAGGTTGATTGGCAGCCGTAG

mRNA sequence

ATGGGAGCCATCAAATTTAAAATTCCAAAGTTCTTCAGAAAAACTGATCCAGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTGTTTGCCATAATTTTATTGATGAGCAGAAGGTTAGATTTTGTGTTTCCAAATTTAAGGATTATGCTCATACTTGGTGGGACAAATTAATGTCAAGAAGAAGAAGGAATCTGGAAGCACCAATTGATTCGTGTTATGAATTCAAAGAATCTACGAGAAAGCGGTTTGTTCCAAATCATTTCCAAAGAGACATGGCACAAAAGCTTCAAGCATTGAGGCAAGGTAGCAAGTTGGTGGAAGACTACTACAAAGAGATGGACACTTTGATGGATCGACTTGATCTTGATGAGGAGATGGAGACTCTCGTAGAACGATTTTTGAATGGCCTCAACAAGGAGATTGCTGACAAGGTTGATTGGCAGCCGTAG

Coding sequence (CDS)

ATGGGAGCCATCAAATTTAAAATTCCAAAGTTCTTCAGAAAAACTGATCCAGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTGTTTGCCATAATTTTATTGATGAGCAGAAGGTTAGATTTTGTGTTTCCAAATTTAAGGATTATGCTCATACTTGGTGGGACAAATTAATGTCAAGAAGAAGAAGGAATCTGGAAGCACCAATTGATTCGTGTTATGAATTCAAAGAATCTACGAGAAAGCGGTTTGTTCCAAATCATTTCCAAAGAGACATGGCACAAAAGCTTCAAGCATTGAGGCAAGGTAGCAAGTTGGTGGAAGACTACTACAAAGAGATGGACACTTTGATGGATCGACTTGATCTTGATGAGGAGATGGAGACTCTCGTAGAACGATTTTTGAATGGCCTCAACAAGGAGATTGCTGACAAGGTTGATTGGCAGCCGTAG

Protein sequence

MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKLMSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLMDRLDLDEEMETLVERFLNGLNKEIADKVDWQP*

Homology

[Close]

BLAST of MELO3C004758T1 vs. TrEMBL
Match: A5BYV1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008811 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-37
Identity = 75/151 (49.67%), Postives = 108/151 (71.52%), Query Frame = 1


Query: 1   MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
           +G IK KIP F  K DPE Y++WEK+VE +F CHN+ +E+KV+    +F DYA  WWD+L
Sbjct: 122 LGNIKMKIPSFQGKNDPEVYLEWEKKVEFIFECHNYSEEKKVKLXXIEFTDYAIIWWDQL 181

Query: 61  MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
           + +RRRN E PI    E K + +KR VP+H+ RD+ QKLQ+L QG + V+DY+K+M+  M
Sbjct: 182 VMKRRRNYERPIXIWEEMKATMKKRXVPSHYYRDLYQKLQSLTQGYRSVDDYHKKMEIAM 241

Query: 121 DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
            R +++E+ E  + RFLNGLN++IA+ V+ Q
Sbjct: 242 IRANVEEDREVTMARFLNGLNRDIANVVELQ 272

[Close]

BLAST of MELO3C004758T1 vs. TrEMBL
Match: A5BSP7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001042 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.4e-36
Identity = 72/151 (47.68%), Postives = 107/151 (70.86%), Query Frame = 1


Query: 1   MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
           +G IK KIP F  K DP+ Y++WEK+VE +F CHN+ +E+ V+  V +F DYA  WWD+L
Sbjct: 108 LGNIKMKIPLFQGKNDPKVYLEWEKKVEFIFECHNYSEEKNVKLVVIEFTDYAIIWWDQL 167

Query: 61  MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
           +  RRRN E PI++  E K + R+ FVP+H+ RD+ QKL +L  G + ++DY+KEM+  M
Sbjct: 168 VMNRRRNYERPIETWEEMKATMRRWFVPSHYYRDLYQKLXSLTXGYRSMDDYHKEMEIAM 227

Query: 121 DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
            R +++E+ E  + RFLNGLN++IA+ V+ Q
Sbjct: 228 IRANVEEDREATMARFLNGLNQDIANVVELQ 258

[Close]

BLAST of MELO3C004758T1 vs. TrEMBL
Match: A5AZG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020379 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-35
Identity = 72/144 (50.00%), Postives = 104/144 (72.22%), Query Frame = 1


Query: 8   IPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKLMSRRRRN 67
           IP F  K +PE Y++WEK+VE +F CHN+ +E+KV+  V +F DYA  WWD+L+  RRRN
Sbjct: 68  IPSFQGKNNPEVYLEWEKKVEFIFECHNYSEEKKVKLAVIEFTDYAIIWWDQLVMNRRRN 127

Query: 68  LEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLMDRLDLDE 127
            E PI++  E K + R+ FVP+H+ RD+ QKLQ+L QG + V+DY+KEM+  M R +++E
Sbjct: 128 YERPIETWEEMKATMRRWFVPSHYYRDLYQKLQSLTQGYRSVDDYHKEMEIAMIRANVEE 187

Query: 128 EMETLVERFLNGLNKEIADKVDWQ 152
           + E  + RFLNGLN +IA+ V+ Q
Sbjct: 188 DREATMARFLNGLNWDIANVVELQ 211

[Close]

BLAST of MELO3C004758T1 vs. TrEMBL
Match: A0A151U9W8_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_020294 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.2e-35
Identity = 73/151 (48.34%), Postives = 104/151 (68.87%), Query Frame = 1


Query: 1   MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
           +G IK  IP F  K DPE Y++WE++VE+VF CHN+ +E+KV+  V +F DY   WWD+ 
Sbjct: 28  LGNIKMTIPTFQGKNDPELYLEWERKVEHVFDCHNYSEEKKVKLAVVEFTDYVSIWWDQF 87

Query: 61  MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
           +  +RRN E  I +  E K   R+RFVP+H+ RD+ +KLQ+L QGS  VEDYYKEM+  M
Sbjct: 88  VINKRRNGERFICTWEEMKVVIRRRFVPSHYHRDLHRKLQSLTQGSMSVEDYYKEMELAM 147

Query: 121 DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
            R++++E+ E  + RF+ GL KE+ D V+ Q
Sbjct: 148 IRVNVEEDYEVTMARFIGGLKKEMVDVVELQ 178

[Close]

BLAST of MELO3C004758T1 vs. TrEMBL
Match: A5AY05_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009305 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.8e-35
Identity = 72/151 (47.68%), Postives = 108/151 (71.52%), Query Frame = 1


Query: 1   MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
           +G IK KIP F  K DP+ Y++WEK+VE +F CHN+ +E+ V+  V +F DYA  WWD+L
Sbjct: 85  LGNIKMKIPSFQGKNDPKVYLEWEKKVEFIFECHNYSEEKIVKLPVIEFTDYAIIWWDQL 144

Query: 61  MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
           +  RRRN E PI++  E K + R+RFV +H+ RD+ QKL++L QG + V+DY+KEM+  M
Sbjct: 145 VMNRRRNYERPIETWEEMKATMRRRFVLSHYYRDLYQKLKSLTQGYRSVDDYHKEMEIAM 204

Query: 121 DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
            R++++E+ E  + RFLN +N++IA+ V  Q
Sbjct: 205 IRVNVEEDREATMARFLNMMNRDIANVVKLQ 235

[Close]

BLAST of MELO3C004758T1 vs. NCBI nr
Match: gi|568833665|ref|XP_006470999.1| (PREDICTED: uncharacterized protein LOC102628703, partial [Citrus sinensis])

HSP 1 Score: 172.2 bits (435), Expect = 7.2e-40
Identity = 79/151 (52.32%), Postives = 112/151 (74.17%), Query Frame = 1


Query: 1   MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
           +G+IK KIP F  K DPE Y++WEK+VE VF CHN+ +E+KV+    +F DYA  WWD+L
Sbjct: 99  LGSIKLKIPSFQGKNDPEAYLEWEKKVELVFDCHNYSEEKKVKLAAVEFTDYAIIWWDQL 158

Query: 61  MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
           +  RRRN E PI++  E K   R+RFVP+H+ R++ Q+LQ+L QGS+ VEDY+KEM+ +M
Sbjct: 159 VLSRRRNRERPINTWEEMKAIMRRRFVPSHYYRELHQRLQSLTQGSRSVEDYHKEMEIIM 218

Query: 121 DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
            R +++EE E  + RFL+GLN++IA+ VD Q
Sbjct: 219 IRANIEEEREATMARFLHGLNQDIANVVDLQ 249

[Close]

BLAST of MELO3C004758T1 vs. NCBI nr
Match: gi|985466622|ref|XP_015389621.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC102627722 [Citrus sinensis])

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-39
Identity = 78/151 (51.66%), Postives = 111/151 (73.51%), Query Frame = 1


Query: 1   MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
           +G+IK KIP F  K DPE Y++WEK+VE VF CHN+  E+KV+    +F DYA  WWD+L
Sbjct: 99  LGSIKLKIPSFQGKNDPEAYLEWEKKVELVFDCHNYFKEKKVKLAAVEFTDYAIIWWDQL 158

Query: 61  MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
           +  RRRN E PI++  E K   R+RFVP+H+ R++ Q+LQ+L QGS+ VEDY+KEM+ +M
Sbjct: 159 VLSRRRNRERPINTWEEMKAIMRRRFVPSHYYRELHQRLQSLTQGSRSVEDYHKEMEIIM 218

Query: 121 DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
            R +++EE E  + RFL+GLN++IA+ +D Q
Sbjct: 219 IRANIEEEREATMARFLHGLNQDIANVIDLQ 249

[Close]

BLAST of MELO3C004758T1 vs. NCBI nr
Match: gi|985456365|ref|XP_015387373.1| (PREDICTED: uncharacterized protein LOC102617792 [Citrus sinensis])

HSP 1 Score: 169.5 bits (428), Expect = 4.6e-39
Identity = 80/151 (52.98%), Postives = 113/151 (74.83%), Query Frame = 1


Query: 1   MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
           +G+IK KIP F  K DPE Y++WEK+VE VF CHN+ +E+KV+    +F DYA  WWD+L
Sbjct: 99  LGSIKLKIPSFQGKHDPEAYLEWEKKVELVFDCHNYSEEKKVKLVAVEFTDYAIIWWDQL 158

Query: 61  MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
           +  RRRN E PI++  E K   R+RFVP+H+ R++ Q+LQ+L QGS+ VEDY+KEM+ +M
Sbjct: 159 VLSRRRNRERPINTWEEMKAIMRRRFVPSHYYRELHQRLQSLTQGSRSVEDYHKEMEIIM 218

Query: 121 DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
            R +++EE ET+  RFL+GLN++IA+ VD Q
Sbjct: 219 IRANIEEERETMA-RFLHGLNQDIANVVDLQ 248

[Close]

BLAST of MELO3C004758T1 vs. NCBI nr
Match: gi|923733656|ref|XP_013668961.1| (PREDICTED: uncharacterized protein LOC106373318 [Brassica napus])

HSP 1 Score: 164.1 bits (414), Expect = 1.9e-37
Identity = 74/151 (49.01%), Postives = 108/151 (71.52%), Query Frame = 1


Query: 1    MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
            +G +K +IP F  K DP+ Y++WEK++E VF C  F +E+KVR   ++F  YA +WWD++
Sbjct: 1843 LGNLKLRIPPFHGKNDPDAYLEWEKKIELVFNCQQFTEERKVRLAATEFCGYAISWWDQI 1902

Query: 61   MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
             + RRRN E  + S +E K   +KRFVPNH+ RD+ QKL+ L QGSK VEDY++EM+TLM
Sbjct: 1903 ATTRRRNGEPQVASWFEMKTVMKKRFVPNHYGRDLHQKLRRLSQGSKSVEDYHQEMETLM 1962

Query: 121  DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
             + DL+EE+E  + RF  GLN++I D+++ Q
Sbjct: 1963 LKADLEEEVEATMARFQGGLNRDIQDRLELQ 1993

[Close]


Query: 1    MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
            +G +K +IP F  K DP+ Y++WEK++E VF C  F +E+KVR   ++F  YA +WWD++
Sbjct: 3269 LGNLKLRIPPFHGKNDPDAYLEWEKKIELVFNCQQFTEERKVRLAATEFCGYAISWWDQI 3328

Query: 61   MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
             + RRRN E  + S +E K   +KRFVPNH+ RD+ QKL+ L QGSK VEDY++EM+TLM
Sbjct: 3329 ATTRRRNGEPQVASWFEMKTVMKKRFVPNHYGRDLHQKLRRLSQGSKSVEDYHQEMETLM 3388

Query: 121  DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
             + DL+EE+E  + RF  GLN++I D+++ Q
Sbjct: 3389 LKADLEEEVEATMARFQGGLNRDIQDRLELQ 3419

HSP 2 Score: 164.1 bits (414), Expect = 1.9e-37
Identity = 75/151 (49.67%), Postives = 108/151 (71.52%), Query Frame = 1


Query: 1   MGAIKFKIPKFFRKTDPEEYIQWEKEVENVFVCHNFIDEQKVRFCVSKFKDYAHTWWDKL 60
           +G IK KIP F  K DPE Y++WEK+VE +F CHN+ +E+KV+    +F DYA  WWD+L
Sbjct: 122 LGNIKMKIPSFQGKNDPEVYLEWEKKVEFIFECHNYSEEKKVKLXXIEFTDYAIIWWDQL 181

Query: 61  MSRRRRNLEAPIDSCYEFKESTRKRFVPNHFQRDMAQKLQALRQGSKLVEDYYKEMDTLM 120
           + +RRRN E PI    E K + +KR VP+H+ RD+ QKLQ+L QG + V+DY+K+M+  M
Sbjct: 182 VMKRRRNYERPIXIWEEMKATMKKRXVPSHYYRDLYQKLQSLTQGYRSVDDYHKKMEIAM 241

Query: 121 DRLDLDEEMETLVERFLNGLNKEIADKVDWQ 152
            R +++E+ E  + RFLNGLN++IA+ V+ Q
Sbjct: 242 IRANVEEDREVTMARFLNGLNRDIANVVELQ 272

The following BLAST results are available for this feature:

BLAST of MELO3C004758T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BYV1_VITVI	1.4e-37	49.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008811 PE=4 SV=1	[more]
A5BSP7_VITVI	7.4e-36	47.68	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001042 PE=4 SV=1	[more]
A5AZG1_VITVI	1.3e-35	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020379 PE=4 SV=1	[more]
A0A151U9W8_CAJCA	2.2e-35	48.34	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_020294 PE=4 SV=1	[more]
A5AY05_VITVI	2.8e-35	47.68	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009305 PE=4 SV=1	[more]

BLAST of MELO3C004758T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|568833665\|ref\|XP_006470999.1\|	7.2e-40	52.32	PREDICTED: uncharacterized protein LOC102628703, partial [Citrus sinensis]	[more]
gi\|985466622\|ref\|XP_015389621.1\|	1.2e-39	51.66	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC102627722 [Citrus sin...	[more]
gi\|985456365\|ref\|XP_015387373.1\|	4.6e-39	52.98	PREDICTED: uncharacterized protein LOC102617792 [Citrus sinensis]	[more]
gi\|923733656\|ref\|XP_013668961.1\|	1.9e-37	49.01	PREDICTED: uncharacterized protein LOC106373318 [Brassica napus]	[more]
gi\|923733656\|ref\|XP_013668961.1\|	1.9e-37	49.01	PREDICTED: uncharacterized protein LOC106373318 [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C004758	MELO3C004758	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C004758T1	MELO3C004758T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C004758T1.cds1	MELO3C004758T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 44..141 score: 1.3
None	No IPR available	PANTHER	PTHR22847	WD40 REPEAT PROTEIN	coord: 1..146 score: 4.2
None	No IPR available	PANTHER	PTHR22847:SF430	MZB10.11 PROTEIN-RELATED	coord: 1..146 score: 4.2