WMU76069 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU76069
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Disease resistance-responsive (Dirigent-like protein) family protein
Location	Chr2 : 33833943 .. 33834287 (-)
Sequence length	360

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGACGTTCGGTCGGTGGTTGGGAGGTTCGCAAGGGCTTTACGCTTCGACCGCACTAGGATCAGTGGGGCTGAACTAAGAATAAGGACTAATAGAAATTTCGCTTTGACTCAAGGTAAATACAAGGGCAGCACCATCACAATCTTGGGCCGGAACACCATTCTCCAAACGGTCAGGGAGTTGTCGGTCATCGGTGGTAGTGGCCGCTTCCGCTTTGCTAGAGGCTTCGCTCTTGCTAACACTTATTATTTCAACCCTGCCACTTTTGATGCCATCGTTCACTATGATATTCATGTCTTGCATTATTGATTTCATTTTAAACCAGTAATTCTATTTTTATATTTTGGAGTGATGATGAACCT

Library


Library category	ESTs
watermelon fruit 34d library	1

Homology

[Close]

BLAST of WMU76069 vs. TAIR10
Match: AT3G13660.1 (AT3G13660.1 Disease resistance-responsive (dirigent-like protein) family protein)

HSP 1 Score: 67.4 bits (163), Expect = 6.8e-12
Identity = 35/78 (44.87%), Postives = 41/78 (52.56%), Query Frame = 2


Query: 71  ELRIRTNRNFALTQGKYKGSTITILGRNTILQTVRELSVIXXXXXXXXXXXXXXXNTYYF 130
           EL      NFA   GKY GSTITILGRNT+   VRE++V+                T +F
Sbjct: 48  ELGFLMAMNFAFKTGKYNGSTITILGRNTVFSKVREMTVVGGSGIFRLARGYVEARTKWF 107

Query: 131 NPATFDAIVHYDIHVLHY 190
           +P T DA V Y+ +VLHY
Sbjct: 108 DPKTGDATVEYNCYVLHY 125

Query: 191  250
           
Sbjct: 168  125

Query: 251  305
           
Sbjct: 228  125

[Close]

BLAST of WMU76069 vs. TAIR10
Match: AT1G58170.1 (AT1G58170.1 Disease resistance-responsive (dirigent-like protein) family protein)

HSP 1 Score: 63.9 bits (154), Expect = 7.5e-11
Identity = 33/81 (40.74%), Postives = 44/81 (54.32%), Query Frame = 2


Query: 62  SGAELRIRTNRNFALTQGKYKGSTITILGRNTILQTVRELSVIXXXXXXXXXXXXXXXNT 121
           S  E+ +    NFA+  GKY GSTIT+LGRN++   VRE+ VI               +T
Sbjct: 105 SKEEIGLLMAMNFAILDGKYNGSTITVLGRNSVFDKVREMPVIGGSGLFRFARGYVQAST 164

Query: 122 YYFNPATFDAIVHYDIHVLHY 181
           + FN  T +AIV Y+ ++LHY
Sbjct: 165 HEFNLKTGNAIVEYNCYLLHY 185

Query: 182  241
           
Sbjct: 225  185

Query: 242  301
           
Sbjct: 285  185

Query: 302  305
           
Sbjct: 345  185

[Close]

BLAST of WMU76069 vs. TAIR10
Match: AT1G55210.1 (AT1G55210.1 Disease resistance-responsive (dirigent-like protein) family protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-09
Identity = 33/78 (42.31%), Postives = 36/78 (46.15%), Query Frame = 2


Query: 71  ELRIRTNRNFALTQGKYKGSTITILGRNTILQTVRELSVIXXXXXXXXXXXXXXXNTYYF 130
           EL      NFA   GKY GSTITILGRNT L  VRE+ ++                T + 
Sbjct: 110 ELGFLMAMNFAFKTGKYNGSTITILGRNTALSEVREMPIVGGSGLFRFARGYVEARTKWI 169

Query: 131 NPATFDAIVHYDIHVLHY 190
           N    DA V Y  +VLHY
Sbjct: 170 NLKNGDATVEYSCYVLHY 187

Query: 191  250
           
Sbjct: 230  187

Query: 251  305
           
Sbjct: 290  187

[Close]

BLAST of WMU76069 vs. TAIR10
Match: AT3G13650.1 (AT3G13650.1 Disease resistance-responsive (dirigent-like protein) family protein)

HSP 1 Score: 57.8 bits (138), Expect = 5.4e-09
Identity = 30/70 (42.86%), Postives = 35/70 (50.00%), Query Frame = 2


Query: 95  NFALTQGKYKGSTITILGRNTILQTVRELSVIXXXXXXXXXXXXXXXNTYYFNPATFDAI 154
           NFA   GKY GS+I ILGRN +L  VRE+ VI                T +F+  + DA 
Sbjct: 117 NFAFKTGKYNGSSIAILGRNAVLTKVREMPVIGGSGLFRFARGYVEARTMWFDQKSGDAT 176

Query: 155 VHYDIHVLHY 214
           V Y  +VLHY
Sbjct: 177 VEYSCYVLHY 186

Query: 215  274
           
Sbjct: 237  186

Query: 275  305
           
Sbjct: 297  186

[Close]

BLAST of WMU76069 vs. TAIR10
Match: AT5G49040.1 (AT5G49040.1 Disease resistance-responsive (dirigent-like protein) family protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-08
Identity = 30/78 (38.46%), Postives = 38/78 (48.72%), Query Frame = 2


Query: 71  ELRIRTNRNFALTQGKYKGSTITILGRNTILQTVRELSVIXXXXXXXXXXXXXXXNTYYF 130
           E+ +    N A   GKY GSTITILGRNT++  VRE+ V+                T  F
Sbjct: 114 EIGLLMAMNLAFKTGKYNGSTITILGRNTVMSKVREMPVVGGSGMFRFARGYVEARTKLF 173

Query: 131 NPATFDAIVHYDIHVLHY 190
           +  T DA V  + ++LHY
Sbjct: 174 DMKTGDATVESNCYILHY 191

Query: 191  250
           
Sbjct: 234  191

Query: 251  305
           
Sbjct: 294  191

[Close]

BLAST of WMU76069 vs. Swiss-Prot
Match: DIR22_ARATH (Dirigent protein 22 OS=Arabidopsis thaliana GN=DIR22 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 35/78 (44.87%), Postives = 41/78 (52.56%), Query Frame = 2


Query: 71  ELRIRTNRNFALTQGKYKGSTITILGRNTILQTVRELSVIXXXXXXXXXXXXXXXNTYYF 130
           EL      NFA   GKY GSTITILGRNT+   VRE++V+                T +F
Sbjct: 48  ELGFLMAMNFAFKTGKYNGSTITILGRNTVFSKVREMTVVGGSGIFRLARGYVEARTKWF 107

Query: 131 NPATFDAIVHYDIHVLHY 190
           +P T DA V Y+ +VLHY
Sbjct: 108 DPKTGDATVEYNCYVLHY 125

Query: 191  250
           
Sbjct: 168  125

Query: 251  305
           
Sbjct: 228  125

[Close]

BLAST of WMU76069 vs. Swiss-Prot
Match: DIR19_ARATH (Dirigent protein 19 OS=Arabidopsis thaliana GN=DIR19 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 33/81 (40.74%), Postives = 44/81 (54.32%), Query Frame = 2


Query: 62  SGAELRIRTNRNFALTQGKYKGSTITILGRNTILQTVRELSVIXXXXXXXXXXXXXXXNT 121
           S  E+ +    NFA+  GKY GSTIT+LGRN++   VRE+ VI               +T
Sbjct: 105 SKEEIGLLMAMNFAILDGKYNGSTITVLGRNSVFDKVREMPVIGGSGLFRFARGYVQAST 164

Query: 122 YYFNPATFDAIVHYDIHVLHY 181
           + FN  T +AIV Y+ ++LHY
Sbjct: 165 HEFNLKTGNAIVEYNCYLLHY 185

Query: 182  241
           
Sbjct: 225  185

Query: 242  301
           
Sbjct: 285  185

Query: 302  305
           
Sbjct: 345  185

[Close]

BLAST of WMU76069 vs. Swiss-Prot
Match: DIR20_ARATH (Dirigent protein 20 OS=Arabidopsis thaliana GN=DIR20 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-08
Identity = 33/78 (42.31%), Postives = 36/78 (46.15%), Query Frame = 2


Query: 71  ELRIRTNRNFALTQGKYKGSTITILGRNTILQTVRELSVIXXXXXXXXXXXXXXXNTYYF 130
           EL      NFA   GKY GSTITILGRNT L  VRE+ ++                T + 
Sbjct: 110 ELGFLMAMNFAFKTGKYNGSTITILGRNTALSEVREMPIVGGSGLFRFARGYVEARTKWI 169

Query: 131 NPATFDAIVHYDIHVLHY 190
           N    DA V Y  +VLHY
Sbjct: 170 NLKNGDATVEYSCYVLHY 187

Query: 191  250
           
Sbjct: 230  187

Query: 251  305
           
Sbjct: 290  187

[Close]

BLAST of WMU76069 vs. Swiss-Prot
Match: DIR7_ARATH (Dirigent protein 7 OS=Arabidopsis thaliana GN=DIR7 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.6e-08
Identity = 30/70 (42.86%), Postives = 35/70 (50.00%), Query Frame = 2


Query: 95  NFALTQGKYKGSTITILGRNTILQTVRELSVIXXXXXXXXXXXXXXXNTYYFNPATFDAI 154
           NFA   GKY GS+I ILGRN +L  VRE+ VI                T +F+  + DA 
Sbjct: 117 NFAFKTGKYNGSSIAILGRNAVLTKVREMPVIGGSGLFRFARGYVEARTMWFDQKSGDAT 176

Query: 155 VHYDIHVLHY 214
           V Y  +VLHY
Sbjct: 177 VEYSCYVLHY 186

Query: 215  274
           
Sbjct: 237  186

Query: 275  305
           
Sbjct: 297  186

[Close]

BLAST of WMU76069 vs. Swiss-Prot
Match: DIR3_ARATH (Dirigent protein 3 OS=Arabidopsis thaliana GN=DIR3 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-07
Identity = 30/78 (38.46%), Postives = 38/78 (48.72%), Query Frame = 2


Query: 71  ELRIRTNRNFALTQGKYKGSTITILGRNTILQTVRELSVIXXXXXXXXXXXXXXXNTYYF 130
           E+ +    N A   GKY GSTITILGRNT++  VRE+ V+                T  F
Sbjct: 114 EIGLLMAMNLAFKTGKYNGSTITILGRNTVMSKVREMPVVGGSGMFRFARGYVEARTKLF 173

Query: 131 NPATFDAIVHYDIHVLHY 190
           +  T DA V  + ++LHY
Sbjct: 174 DMKTGDATVESNCYILHY 191

Query: 191  250
           
Sbjct: 234  191

Query: 251  305
           
Sbjct: 294  191

[Close]

BLAST of WMU76069 vs. NCBI nr
Match: gi|778693014|ref|XP_011653564.1| (PREDICTED: dirigent protein 22-like [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-10
Identity = 39/78 (50.00%), Postives = 46/78 (58.97%), Query Frame = 2


Query: 71  ELRIRTNRNFALTQGKYKGSTITILGRNTILQTVRELSVIXXXXXXXXXXXXXXXNTYYF 130
           E+ +    NFA T GKYKGS+ITILGRN IL  VRE+ V+                T YF
Sbjct: 109 EIGLLMAMNFAFTYGKYKGSSITILGRNPILNQVREMPVVGGTGRFRFAKGHALAKTQYF 168

Query: 131 NPATFDAIVHYDIHVLHY 190
           N  T DA+V YDI+VLHY
Sbjct: 169 NATTLDAVVEYDIYVLHY 186

Query: 191  250
           
Sbjct: 229  186

Query: 251  305
           
Sbjct: 289  186

[Close]

BLAST of WMU76069 vs. NCBI nr
Match: gi|659097739|ref|XP_008449786.1| (PREDICTED: dirigent protein 22-like [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 6.0e-10
Identity = 39/78 (50.00%), Postives = 46/78 (58.97%), Query Frame = 2


Query: 71  ELRIRTNRNFALTQGKYKGSTITILGRNTILQTVRELSVIXXXXXXXXXXXXXXXNTYYF 130
           E+ +    NFA T GKYKGS+ITILGRN I+  VRE+ V+                T YF
Sbjct: 111 EIGLLMAMNFAFTYGKYKGSSITILGRNPIVNHVREMPVVGGTGRFRFARGHALAKTQYF 170

Query: 131 NPATFDAIVHYDIHVLHY 190
           N  T DAIV YDI+VLHY
Sbjct: 171 NATTLDAIVEYDIYVLHY 188

Query: 191  250
           
Sbjct: 231  188

Query: 251  305
           
Sbjct: 291  188

[Close]

BLAST of WMU76069 vs. NCBI nr
Match: gi|1009124088|ref|XP_015878883.1| (PREDICTED: dirigent protein 22-like [Ziziphus jujuba])

HSP 1 Score: 72.0 bits (175), Expect = 7.8e-10
Identity = 40/81 (49.38%), Postives = 48/81 (59.26%), Query Frame = 2


Query: 62  SGAELRIRTNRNFALTQGKYKGSTITILGRNTILQTVRELSVIXXXXXXXXXXXXXXXNT 121
           S  E+ +    NFA TQGKY GSTITILGRN +   VRE+ VI               +T
Sbjct: 127 SQQEVGLLMAMNFAFTQGKYNGSTITILGRNPVFNKVREMPVIGGSGLFRFARGYAQAST 186

Query: 122 YYFNPATFDAIVHYDIHVLHY 181
           + F PAT DAIV Y+I+VLHY
Sbjct: 187 HKFTPATGDAIVEYNIYVLHY 207

Query: 182  241
           
Sbjct: 247  207

Query: 242  301
           
Sbjct: 307  207

Query: 302  305
           
Sbjct: 367  207

[Close]

BLAST of WMU76069 vs. NCBI nr
Match: gi|356521072|ref|XP_003529182.1| (PREDICTED: dirigent protein 22-like [Glycine max])

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-09
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 2


Query: 62  SGAELRIRTNRNFALTQGKYKGSTITILGRNTILQTVRELSVIXXXXXXXXXXXXXXXNT 121
           S +E+ +    NFA+T+GKY GSTITILGRN++    RE+ VI                T
Sbjct: 109 SQSEITLLMAMNFAITEGKYNGSTITILGRNSVYDKEREMPVIGGSGLFRFARGYAQLRT 168

Query: 122 YYFNPATFDAIVHYDIHVLHY 181
           ++F+P T DAIV Y+I+VLHY
Sbjct: 169 HWFSPTTKDAIVEYNIYVLHY 189

Query: 182  241
           
Sbjct: 229  189

Query: 242  301
           
Sbjct: 289  189

Query: 302  305
           
Sbjct: 349  189

[Close]

BLAST of WMU76069 vs. NCBI nr
Match: gi|672175263|ref|XP_008807680.1| (PREDICTED: dirigent protein 22-like [Phoenix dactylifera])

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-09
Identity = 37/81 (45.68%), Postives = 47/81 (58.02%), Query Frame = 2


Query: 62  SGAELRIRTNRNFALTQGKYKGSTITILGRNTILQTVRELSVIXXXXXXXXXXXXXXXNT 121
           S  E  +  + NFA T+GKY GST+TILGRNT+   VRE+ VI                T
Sbjct: 112 SKEESGLLMSMNFAFTEGKYNGSTVTILGRNTVFSEVREMPVIGGSGLFRMAQGYAQART 171

Query: 122 YYFNPATFDAIVHYDIHVLHY 181
           + FNP T DA+V Y++ VLHY
Sbjct: 172 HSFNPKTGDAVVEYNVFVLHY 192

Query: 182  241
           
Sbjct: 232  192

Query: 242  301
           
Sbjct: 292  192

Query: 302  305
           
Sbjct: 352  192

The following BLAST results are available for this feature:

BLAST of WMU76069 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13660.1	6.8e-12	44.87	Disease resistance-responsive (dirigent-like protein) family protein	[more]
AT1G58170.1	7.5e-11	40.74	Disease resistance-responsive (dirigent-like protein) family protein	[more]
AT1G55210.1	1.4e-09	42.31	Disease resistance-responsive (dirigent-like protein) family protein	[more]
AT3G13650.1	5.4e-09	42.86	Disease resistance-responsive (dirigent-like protein) family protein	[more]
AT5G49040.1	1.2e-08	38.46	Disease resistance-responsive (dirigent-like protein) family protein	[more]

BLAST of WMU76069 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DIR22_ARATH	1.2e-10	44.87	Dirigent protein 22 OS=Arabidopsis thaliana GN=DIR22 PE=2 SV=1	[more]
DIR19_ARATH	1.3e-09	40.74	Dirigent protein 19 OS=Arabidopsis thaliana GN=DIR19 PE=2 SV=1	[more]
DIR20_ARATH	2.5e-08	42.31	Dirigent protein 20 OS=Arabidopsis thaliana GN=DIR20 PE=2 SV=1	[more]
DIR7_ARATH	9.6e-08	42.86	Dirigent protein 7 OS=Arabidopsis thaliana GN=DIR7 PE=2 SV=1	[more]
DIR3_ARATH	2.1e-07	38.46	Dirigent protein 3 OS=Arabidopsis thaliana GN=DIR3 PE=3 SV=1	[more]

BLAST of WMU76069 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778693014\|ref\|XP_011653564.1\|	2.7e-10	50.00	PREDICTED: dirigent protein 22-like [Cucumis sativus]	[more]
gi\|659097739\|ref\|XP_008449786.1\|	6.0e-10	50.00	PREDICTED: dirigent protein 22-like [Cucumis melo]	[more]
gi\|1009124088\|ref\|XP_015878883.1\|	7.8e-10	49.38	PREDICTED: dirigent protein 22-like [Ziziphus jujuba]	[more]
gi\|356521072\|ref\|XP_003529182.1\|	1.3e-09	45.68	PREDICTED: dirigent protein 22-like [Glycine max]	[more]
gi\|672175263\|ref\|XP_008807680.1\|	1.7e-09	45.68	PREDICTED: dirigent protein 22-like [Phoenix dactylifera]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla003180	Cla003180	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S4_0074858	S4_0074858	EST