WMU68587 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU68587
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Peptidyl-prolyl cis-trans isomerase
Location	Chr1 : 14437759 .. 14438375 (+)
Sequence length	169

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GTTTCAATGGCTAATGCAGGCCCAAAACACAAATGGGTCTCAGTTTTTTATCACAACCGTAGCCACTCCTTGGCTGGACAACAAGCATACAGTGTTTGGACGAGTTATTAAAAGGCATGGACGTTGTGCAGACAATCGAGAAAGTGAAAACCAGACAAGGCAGACAAGC

Library


Library category	ESTs
watermelon fruit 18d library	1

Homology

[Close]

BLAST of WMU68587 vs. TAIR10
Match: AT3G44600.1 (AT3G44600.1 cyclophilin71)

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-11
Identity = 28/29 (96.55%), Postives = 27/29 (93.10%), Query Frame = 2


Query: 26  NTNGSQFFITTVATPWLDNKHTVFGRVIK 85
           NTNGSQFFITTVATPWLDNKHTVFGRV+K
Sbjct: 570 NTNGSQFFITTVATPWLDNKHTVFGRVVK 598

Query: 86   113
           
Sbjct: 630  598

[Close]

BLAST of WMU68587 vs. TAIR10
Match: AT3G62030.2 (AT3G62030.2 rotamase CYP 4)

HSP 1 Score: 52.8 bits (125), Expect = 8.2e-08
Identity = 23/29 (79.31%), Postives = 23/29 (79.31%), Query Frame = 2


Query: 26  NTNGSQFFITTVATPWLDNKHTVFGRVIK 85
           NTNGSQFFI TV T WLDNKH VFG+VI+
Sbjct: 250 NTNGSQFFICTVKTSWLDNKHVVFGQVIE 278

Query: 86   113
           
Sbjct: 310  278

[Close]

BLAST of WMU68587 vs. TAIR10
Match: AT5G58710.1 (AT5G58710.1 rotamase CYP 7)

HSP 1 Score: 51.6 bits (122), Expect = 1.8e-07
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 2


Query: 23  QNTNGSQFFITTVATPWLDNKHTVFGRVI 82
           Q+TNGSQFFITTV T WLD +H VFG+V+
Sbjct: 143 QDTNGSQFFITTVTTSWLDGRHVVFGKVV 171

Query: 83   110
           
Sbjct: 203  171

[Close]

BLAST of WMU68587 vs. TAIR10
Match: AT2G29960.1 (AT2G29960.1 cyclophilin 5)

HSP 1 Score: 50.8 bits (120), Expect = 3.1e-07
Identity = 20/30 (66.67%), Postives = 24/30 (80.00%), Query Frame = 2


Query: 23  QNTNGSQFFITTVATPWLDNKHTVFGRVIK 82
           ++TNGSQFFITTV T WLD +H VFG+V++
Sbjct: 140 EDTNGSQFFITTVTTSWLDGRHVVFGKVVQ 169

Query: 83   113
           
Sbjct: 200  169

[Close]

BLAST of WMU68587 vs. TAIR10
Match: AT2G21130.1 (AT2G21130.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein)

HSP 1 Score: 50.1 bits (118), Expect = 5.3e-07
Identity = 21/29 (72.41%), Postives = 22/29 (75.86%), Query Frame = 2


Query: 26  NTNGSQFFITTVATPWLDNKHTVFGRVIK 85
           NTNGSQFFI TV T WLD KH VFG+V++
Sbjct: 114 NTNGSQFFICTVKTDWLDGKHVVFGQVVE 142

Query: 86   113
           
Sbjct: 174  142

[Close]

BLAST of WMU68587 vs. Swiss-Prot
Match: CPY71_ARATH (Peptidyl-prolyl cis-trans isomerase CYP71 OS=Arabidopsis thaliana GN=CYP71 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.7e-10
Identity = 28/29 (96.55%), Postives = 27/29 (93.10%), Query Frame = 2


Query: 26  NTNGSQFFITTVATPWLDNKHTVFGRVIK 85
           NTNGSQFFITTVATPWLDNKHTVFGRV+K
Sbjct: 570 NTNGSQFFITTVATPWLDNKHTVFGRVVK 598

Query: 86   113
           
Sbjct: 630  598

[Close]

BLAST of WMU68587 vs. Swiss-Prot
Match: PPWD1_PONAB (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Pongo abelii GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-08
Identity = 26/29 (89.66%), Postives = 24/29 (82.76%), Query Frame = 2


Query: 26  NTNGSQFFITTVATPWLDNKHTVFGRVIK 85
           NTNGSQFFIT V TPWLDNKHTVFGRV K
Sbjct: 586 NTNGSQFFITVVPTPWLDNKHTVFGRVTK 614

Query: 86   113
           
Sbjct: 646  614

[Close]

BLAST of WMU68587 vs. Swiss-Prot
Match: PPWD1_MOUSE (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus musculus GN=Ppwd1 PE=1 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-08
Identity = 26/29 (89.66%), Postives = 24/29 (82.76%), Query Frame = 2


Query: 26  NTNGSQFFITTVATPWLDNKHTVFGRVIK 85
           NTNGSQFFIT V TPWLDNKHTVFGRV K
Sbjct: 586 NTNGSQFFITVVPTPWLDNKHTVFGRVTK 614

Query: 86   113
           
Sbjct: 646  614

[Close]

BLAST of WMU68587 vs. Swiss-Prot
Match: PPWD1_BOVIN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Bos taurus GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-08
Identity = 26/29 (89.66%), Postives = 24/29 (82.76%), Query Frame = 2


Query: 26  NTNGSQFFITTVATPWLDNKHTVFGRVIK 85
           NTNGSQFFIT V TPWLDNKHTVFGRV K
Sbjct: 584 NTNGSQFFITVVPTPWLDNKHTVFGRVTK 612

Query: 86   113
           
Sbjct: 644  612

[Close]

BLAST of WMU68587 vs. Swiss-Prot
Match: PPWD1_HUMAN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-08
Identity = 26/29 (89.66%), Postives = 24/29 (82.76%), Query Frame = 2


Query: 26  NTNGSQFFITTVATPWLDNKHTVFGRVIK 85
           NTNGSQFFIT V TPWLDNKHTVFGRV K
Sbjct: 586 NTNGSQFFITVVPTPWLDNKHTVFGRVTK 614

Query: 86   113
           
Sbjct: 646  614

[Close]

BLAST of WMU68587 vs. NCBI nr
Match: gi|764560000|ref|XP_011461124.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 [Fragaria vesca subsp. vesca])

HSP 1 Score: 67.4 bits (163), Expect = 9.1e-09
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 2


Query: 23  QNTNGSQFFITTVATPWLDNKHTVFGRVIK 82
           QNTNGSQFFITTVATPWLDNKHTVFGRVIK
Sbjct: 557 QNTNGSQFFITTVATPWLDNKHTVFGRVIK 586

Query: 83   113
           
Sbjct: 617  586

[Close]

BLAST of WMU68587 vs. NCBI nr
Match: gi|922431517|ref|XP_013621854.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 [Brassica oleracea var. oleracea])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 2


Query: 23  QNTNGSQFFITTVATPWLDNKHTVFGRVIK 82
           QNTNGSQFFITTVATPWLDNKHTVFGRV+K
Sbjct: 560 QNTNGSQFFITTVATPWLDNKHTVFGRVVK 589

Query: 83   113
           
Sbjct: 620  589

[Close]

BLAST of WMU68587 vs. NCBI nr
Match: gi|567159824|ref|XP_006419120.1| (hypothetical protein EUTSA_v10002440mg [Eutrema salsugineum])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 2


Query: 23  QNTNGSQFFITTVATPWLDNKHTVFGRVIK 82
           QNTNGSQFFITTVATPWLDNKHTVFGRV+K
Sbjct: 569 QNTNGSQFFITTVATPWLDNKHTVFGRVVK 598

Query: 83   113
           
Sbjct: 629  598

[Close]

BLAST of WMU68587 vs. NCBI nr
Match: gi|1002866388|ref|XP_015696024.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 [Oryza brachyantha])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 2


Query: 23  QNTNGSQFFITTVATPWLDNKHTVFGRVIK 82
           QNTNGSQFFITTVATPWLDNKHTVFGRV+K
Sbjct: 584 QNTNGSQFFITTVATPWLDNKHTVFGRVVK 613

Query: 83   113
           
Sbjct: 644  613

[Close]

BLAST of WMU68587 vs. NCBI nr
Match: gi|674934344|emb|CDX99192.1| (BnaA06g18830D [Brassica napus])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 2


Query: 23  QNTNGSQFFITTVATPWLDNKHTVFGRVIK 82
           QNTNGSQFFITTVATPWLDNKHTVFGRV+K
Sbjct: 560 QNTNGSQFFITTVATPWLDNKHTVFGRVVK 589

Query: 83   113
           
Sbjct: 620  589

The following BLAST results are available for this feature:

BLAST of WMU68587 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G44600.1	2.1e-11	96.55	cyclophilin71	[more]
AT3G62030.2	8.2e-08	79.31	rotamase CYP 4	[more]
AT5G58710.1	1.8e-07	72.41	rotamase CYP 7	[more]
AT2G29960.1	3.1e-07	66.67	cyclophilin 5	[more]
AT2G21130.1	5.3e-07	72.41	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein	[more]

BLAST of WMU68587 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CPY71_ARATH	3.7e-10	96.55	Peptidyl-prolyl cis-trans isomerase CYP71 OS=Arabidopsis thaliana GN=CYP71 PE=1 ...	[more]
PPWD1_PONAB	1.5e-08	89.66	Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Pongo abel...	[more]
PPWD1_MOUSE	1.5e-08	89.66	Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus muscul...	[more]
PPWD1_BOVIN	1.5e-08	89.66	Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Bos taurus...	[more]
PPWD1_HUMAN	1.5e-08	89.66	Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapie...	[more]

BLAST of WMU68587 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|764560000\|ref\|XP_011461124.1\|	9.1e-09	100.00	PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 [Fragaria vesca subsp. vesc...	[more]
gi\|922431517\|ref\|XP_013621854.1\|	1.2e-08	96.67	PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 [Brassica oleracea var. ole...	[more]
gi\|567159824\|ref\|XP_006419120.1\|	1.2e-08	96.67	hypothetical protein EUTSA_v10002440mg [Eutrema salsugineum]	[more]
gi\|1002866388\|ref\|XP_015696024.1\|	1.2e-08	96.67	PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 [Oryza brachyantha]	[more]
gi\|674934344\|emb\|CDX99192.1\|	1.2e-08	96.67	BnaA06g18830D [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR002130	Cyclophilin-type_PPIase_dom
IPR024936	Cyclophilin-type_PPIase

Vocabulary: **Biological Process**
Term	Definition
GO:0000413	protein peptidyl-prolyl isomerization
GO:0006457	protein folding

Vocabulary: **Molecular Function**
Term	Definition
GO:0003755	peptidyl-prolyl cis-trans isomerase activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla003556	Cla003556	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0186366	S2_0186366	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	PRINTS	PR00153	CSAPPISMRASE	coord: 15..27 score: 3.1E-6coord: 28..43 score: 3.
IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	PFAM	PF00160	Pro_isomerase	coord: 7..38 score: 1.2
IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	PROFILE	PS50072	CSA_PPIASE_2	coord: 1..41 score: 10
IPR024936	Cyclophilin-type peptidyl-prolyl cis-trans isomerase	PANTHER	PTHR11071	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	coord: 10..38 score: 3.5