WMU68502 (transcribed_cluster) Watermelon (97103) v1

NameWMU68502
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionDNA binding
LocationChr5 : 25734805 .. 25735840 (-)
Sequence length383
The following sequences are available for this feature:

transcribed_cluster sequence

TTACGCCACTCAAAGGCGTTGGTCCGGCCACTGTCCTTCGGCAGTTCTGGCTGCTTACGCGCCGGATATTGCGCCTTTCATGTCCGACGAGGCTATGGAGGCGGCTCTAGGCAACTCCAAGGATTATTCGTTGAAGCAATACTTATCGTTCGCAAAGAAGTTGCAAGATAAAGCCAAGGATTAAGCTCAGAAGGACAAAATTTCACACCATCGGACGTAGGGAGGGCTTTGTGGAGTATAGCTATAGGGGAAAAATTCAAAGGTTCACAATCAGAATTAGAGCCCCAAGAAGGAAGGCAAAACTGGGACCAAAAGAAAGAGAAAAACATCCAAGTGACAGCCCTGCCACCGTTACAGCCTATATCTCAGGTTTATTCATTACT
BLAST of WMU68502 vs. TAIR10
Match: AT3G12210.2 (AT3G12210.2 DNA binding)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 36/38 (94.74%), Postives = 34/38 (89.47%), Query Frame = 2

Query: 38  SAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSF 97
           SAVLAAYAPDIAPFMSDEAME ALGNSKDYSLKQYL F
Sbjct: 123 SAVLAAYAPDIAPFMSDEAMEVALGNSKDYSLKQYLLF 160

Query: 98  152
           
Sbjct: 183 160

BLAST of WMU68502 vs. NCBI nr
Match: gi|449447089|ref|XP_004141302.1| (PREDICTED: uncharacterized protein LOC101204707 isoform X1 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 2.2e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 2

Query: 38  SAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSF 97
           SAVLAAYAPD+APFMSDEAMEAALGNSKDYSLKQYL F
Sbjct: 122 SAVLAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLLF 159

Query: 98  152
           
Sbjct: 182 159

BLAST of WMU68502 vs. NCBI nr
Match: gi|659103680|ref|XP_008452684.1| (PREDICTED: uncharacterized protein LOC103493629 isoform X1 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-10
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 2

Query: 38  SAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSF 97
           SA+LAAYAPD+APFMSDEAMEAALGNSKDYSLKQYL F
Sbjct: 121 SAILAAYAPDVAPFMSDEAMEAALGNSKDYSLKQYLLF 158

Query: 98  152
           
Sbjct: 181 158

BLAST of WMU68502 vs. NCBI nr
Match: gi|255537954|ref|XP_002510042.1| (PREDICTED: uncharacterized protein LOC8265244 [Ricinus communis])

HSP 1 Score: 73.2 bits (178), Expect = 3.8e-10
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 2

Query: 38  SAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSF 97
           SAVLAAYAPD+APFMSDEAMEAALG+SKDY+LKQYLSF
Sbjct: 121 SAVLAAYAPDVAPFMSDEAMEAALGSSKDYTLKQYLSF 158

Query: 98  152
           
Sbjct: 181 158

BLAST of WMU68502 vs. NCBI nr
Match: gi|1009135686|ref|XP_015885118.1| (PREDICTED: uncharacterized protein LOC107420631 [Ziziphus jujuba])

HSP 1 Score: 73.2 bits (178), Expect = 3.8e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 2

Query: 38  SAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSF 97
           SAVLAAYAPDIAPFMSDEAMEAALGNSKDY+LKQYL F
Sbjct: 121 SAVLAAYAPDIAPFMSDEAMEAALGNSKDYTLKQYLIF 158

Query: 98  152
           
Sbjct: 181 158

BLAST of WMU68502 vs. NCBI nr
Match: gi|297829776|ref|XP_002882770.1| (hypothetical protein ARALYDRAFT_478581 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 72.8 bits (177), Expect = 4.9e-10
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 2

Query: 38  SAVLAAYAPDIAPFMSDEAMEAALGNSKDYSLKQYLSF 97
           SAVLAAYAPDIAPFMSDEAME ALGNSKDYSLKQYL F
Sbjct: 123 SAVLAAYAPDIAPFMSDEAMEVALGNSKDYSLKQYLLF 160

Query: 98  152
           
Sbjct: 183 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT3G12210.21.3e-1394.74 DNA binding[more]
Match NameE-valueIdentityDescription
gi|449447089|ref|XP_004141302.1|2.2e-1094.74PREDICTED: uncharacterized protein LOC101204707 isoform X1 [Cucumis sativus][more]
gi|659103680|ref|XP_008452684.1|2.9e-1092.11PREDICTED: uncharacterized protein LOC103493629 isoform X1 [Cucumis melo][more]
gi|255537954|ref|XP_002510042.1|3.8e-1092.11PREDICTED: uncharacterized protein LOC8265244 [Ricinus communis][more]
gi|1009135686|ref|XP_015885118.1|3.8e-1094.74PREDICTED: uncharacterized protein LOC107420631 [Ziziphus jujuba][more]
gi|297829776|ref|XP_002882770.1|4.9e-1094.74hypothetical protein ARALYDRAFT_478581 [Arabidopsis lyrata subsp. lyrata][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla020904Cla020904gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0184679S2_0184679EST


Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR21521UNCHARACTERIZEDcoord: 14..112
score: 1.5